Wall clock time and date at job start Mon Mar 30 2020 01:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00011 * 2 1 4 4 H 1.09002 * 110.53693 * 332.61169 * 3 2 1 5 5 C 1.54887 * 110.48580 * 95.22537 * 3 2 1 6 6 C 1.54889 * 102.74914 * 156.61996 * 5 3 2 7 7 C 1.54267 * 104.19527 * 322.06156 * 6 5 3 8 8 C 1.53876 * 106.59921 * 23.60413 * 7 6 5 9 9 H 1.09004 * 110.03229 * 240.66743 * 8 7 6 10 10 C 1.52999 * 110.02815 * 119.28933 * 8 7 6 11 11 N 1.46498 * 109.47419 * 66.45364 * 10 8 7 12 12 C 1.38821 * 120.00147 * 179.97438 * 11 10 8 13 13 C 1.39799 * 119.58517 * 0.02562 * 12 11 10 14 14 C 1.38599 * 119.49033 * 179.97438 * 13 12 11 15 15 C 1.38387 * 118.68216 * 359.97438 * 14 13 12 16 16 C 1.40557 * 119.14754 * 0.02562 * 15 14 13 17 17 C 1.41319 * 119.78116 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.40024 * 119.99721 * 180.27133 * 17 16 15 20 20 N 1.30744 * 120.00003 * 359.71934 * 19 17 16 21 21 Si 1.86801 * 119.99807 * 179.71983 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99935 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00095 * 21 19 17 24 24 H 1.48502 * 109.46906 * 330.00002 * 21 19 17 25 25 N 1.31957 * 119.58682 * 180.25451 * 12 11 10 26 26 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47140 * 299.99569 * 1 2 3 28 28 H 1.08997 * 109.47535 * 59.99821 * 1 2 3 29 29 H 1.09004 * 110.75569 * 38.30414 * 5 3 2 30 30 H 1.08997 * 110.75675 * 274.93528 * 5 3 2 31 31 H 1.09001 * 110.49016 * 203.37744 * 6 5 3 32 32 H 1.08998 * 110.48557 * 80.73484 * 6 5 3 33 33 H 1.09000 * 110.03078 * 264.32440 * 7 6 5 34 34 H 1.08998 * 110.07865 * 142.91590 * 7 6 5 35 35 H 1.08996 * 109.47312 * 306.45093 * 10 8 7 36 36 H 1.09002 * 109.46799 * 186.45600 * 10 8 7 37 37 H 0.97003 * 119.99744 * 0.02562 * 11 10 8 38 38 H 1.08002 * 120.25554 * 359.97438 * 13 12 11 39 39 H 1.08003 * 120.65797 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.42499 * 180.02562 * 15 14 13 41 41 H 0.96995 * 119.99789 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0234 -0.4696 5 6 2.3514 1.7469 1.4449 6 6 3.4600 2.8062 1.2259 7 6 4.2949 2.2439 0.0568 8 6 3.3730 1.2896 -0.7226 9 1 3.7881 0.2817 -0.7166 10 6 3.2085 1.7797 -2.1626 11 7 4.4915 1.6783 -2.8626 12 6 4.5898 2.0676 -4.1914 13 6 3.4592 2.5557 -4.8531 14 6 3.5598 2.9444 -6.1797 15 6 4.7859 2.8366 -6.8123 16 6 5.8859 2.3382 -6.0930 17 6 7.1440 2.2220 -6.7260 18 1 7.2579 2.5154 -7.7591 19 6 8.2415 1.7207 -6.0154 20 7 8.1035 1.3653 -4.7648 21 14 9.9028 1.5598 -6.8543 22 1 10.6735 2.8158 -6.6710 23 1 10.6525 0.4269 -6.2546 24 1 9.7028 1.3088 -8.3042 25 7 5.7483 1.9680 -4.8155 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.7298 0.9062 2.0265 30 1 1.4818 2.1922 1.9283 31 1 4.0748 2.9057 2.1205 32 1 3.0218 3.7665 0.9543 33 1 5.1568 1.6988 0.4418 34 1 4.6257 3.0555 -0.5911 35 1 2.8786 2.8185 -2.1574 36 1 2.4666 1.1654 -2.6728 37 1 5.2720 1.3384 -2.3977 38 1 2.5147 2.6294 -4.3346 39 1 2.6985 3.3245 -6.7090 40 1 4.8962 3.1318 -7.8453 41 1 8.8637 1.0177 -4.2727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324086121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:02 Heat of formation + Delta-G solvation = -38.742276 kcal Electronic energy + Delta-G solvation = -21153.879979 eV Core-core repulsion = 18032.300308 eV Total energy + Delta-G solvation = -3121.579671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52530 -39.85634 -37.51041 -36.14917 -35.00850 -32.40449 -31.64332 -29.63975 -29.14173 -27.25193 -27.14998 -25.12854 -23.34917 -22.34560 -21.61534 -20.75486 -19.24176 -18.13579 -17.96763 -16.74660 -16.51761 -16.27297 -15.99953 -15.85446 -15.67825 -15.14674 -15.00471 -14.62258 -14.39787 -13.95484 -13.76353 -13.57155 -13.14611 -12.85735 -12.72744 -12.63442 -12.40200 -12.25688 -12.19398 -12.00496 -11.89209 -11.73816 -11.54292 -11.37431 -11.25945 -10.65482 -10.45673 -9.83371 -9.44291 -8.29383 -8.22180 -6.47814 1.06533 1.34657 1.41815 1.55137 1.59290 2.25673 2.55502 2.91739 2.93196 3.56239 3.64485 3.84934 4.05465 4.26378 4.27028 4.35071 4.37625 4.45220 4.52600 4.55672 4.63973 4.64937 4.73884 4.83203 4.87869 4.95835 4.99858 5.00673 5.03641 5.11016 5.17581 5.21616 5.24674 5.38244 5.41961 5.71904 5.96420 6.07331 6.23149 6.32547 6.56113 6.84086 6.94805 7.22444 8.34930 8.52047 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.004000 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.646968 B = 6998.146469 C = 7681.065471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.091 3.909 4 H 0.080 0.920 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.095 4.095 9 H 0.073 0.927 10 C 0.153 3.847 11 N -0.731 5.731 12 C 0.393 3.607 13 C -0.369 4.369 14 C -0.029 4.029 15 C -0.344 4.344 16 C 0.259 3.741 17 C -0.472 4.472 18 H 0.087 0.913 19 C 0.026 3.974 20 N -0.752 5.752 21 Si 0.987 3.013 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.257 1.257 25 N -0.565 5.565 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 0.410 12.776 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.172 4.172 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.114 4.114 9 H 0.091 0.909 10 C 0.029 3.971 11 N -0.366 5.366 12 C 0.153 3.847 13 C -0.395 4.395 14 C -0.054 4.054 15 C -0.367 4.367 16 C 0.131 3.869 17 C -0.504 4.504 18 H 0.105 0.895 19 C -0.196 4.196 20 N -0.374 5.374 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.193 1.193 24 H -0.180 1.180 25 N -0.288 5.288 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.226 0.774 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.704 -0.122 13.424 16.564 hybrid contribution 0.093 0.209 -0.869 0.899 sum -9.611 0.088 12.555 15.811 Atomic orbital electron populations 1.22959 0.79705 1.03665 1.00833 1.87902 1.21308 1.28206 1.95091 1.23027 0.93171 0.84503 0.95999 0.90211 1.22895 0.99490 0.99089 0.95774 1.22262 0.96792 0.98356 0.97924 1.22142 0.98016 0.98260 0.97273 1.21953 0.96368 1.00201 0.92858 0.90892 1.21268 0.84891 0.99774 0.91189 1.44289 1.11793 1.72203 1.08321 1.18994 0.90412 0.89128 0.86206 1.20941 0.98362 1.22646 0.97525 1.21002 0.96356 0.94167 0.93833 1.21693 0.95311 1.18748 1.00942 1.18692 0.93399 0.87281 0.87486 1.19948 0.93337 1.38164 0.98967 0.89528 1.26963 1.04420 0.92948 0.95223 1.70254 1.32006 1.25698 1.09481 0.85156 0.75998 0.78795 0.79369 1.18754 1.19338 1.18037 1.68194 1.22075 1.27630 1.10888 0.88864 0.92547 0.93628 0.90853 0.89550 0.90093 0.90716 0.91509 0.92378 0.92482 0.93680 0.77357 0.86648 0.85269 0.87909 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.85 113.37 1.23 1.63 16 2 O -0.41 -9.64 10.41 -148.98 -1.55 -11.19 16 3 C 0.09 1.96 2.88 31.67 0.09 2.05 16 4 H 0.08 1.55 7.53 -2.39 -0.02 1.53 16 5 C -0.13 -2.33 6.62 31.88 0.21 -2.11 16 6 C -0.12 -2.07 6.83 31.67 0.22 -1.85 16 7 C -0.12 -2.85 6.13 31.32 0.19 -2.66 16 8 C -0.09 -2.49 2.74 -10.07 -0.03 -2.51 16 9 H 0.07 2.15 8.07 -2.38 -0.02 2.13 16 10 C 0.15 4.90 3.91 86.38 0.34 5.24 16 11 N -0.73 -30.47 5.46 -344.99 -1.88 -32.36 16 12 C 0.39 19.99 7.65 133.42 1.02 21.01 16 13 C -0.37 -17.24 9.34 22.73 0.21 -17.02 16 14 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 15 C -0.34 -18.06 9.83 22.87 0.22 -17.84 16 16 C 0.26 15.16 6.55 40.18 0.26 15.43 16 17 C -0.47 -26.84 9.14 23.46 0.21 -26.62 16 18 H 0.09 4.62 7.85 -2.91 -0.02 4.59 16 19 C 0.03 1.38 5.50 85.29 0.47 1.85 16 20 N -0.75 -41.67 11.46 21.84 0.25 -41.42 16 21 Si 0.99 39.39 29.56 68.60 2.03 41.42 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 N -0.57 -32.86 7.89 -186.58 -1.47 -34.33 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.71 8.11 -2.39 -0.02 0.69 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 35 H 0.06 1.76 7.92 -2.39 -0.02 1.74 16 36 H 0.04 1.49 7.92 -2.39 -0.02 1.48 16 37 H 0.39 16.67 8.43 -92.71 -0.78 15.89 16 38 H 0.12 4.66 6.68 -2.91 -0.02 4.64 16 39 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 41 H 0.28 13.80 8.29 -92.71 -0.77 13.03 16 Total: -1.00 -67.33 335.69 2.49 -64.85 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.23 Total: 37.59 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.88 Total: -24.56 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.10 Total: -108.11 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.55 Total: -11.19 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -67.33 2.49 -64.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324086121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.104 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds