Wall clock time and date at job start Mon Mar 30 2020 01:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99990 * 2 1 4 4 C 1.53001 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.50917 * 305.07772 * 4 3 2 6 6 C 1.53118 * 109.53548 * 65.17947 * 4 3 2 7 7 C 1.53125 * 109.16054 * 177.61217 * 6 4 3 8 8 C 1.53038 * 109.27656 * 302.34479 * 7 6 4 9 9 N 1.46852 * 109.52681 * 59.17993 * 8 7 6 10 10 C 1.38813 * 111.00084 * 174.16260 * 9 8 7 11 11 C 1.39799 * 119.58229 * 304.20213 * 10 9 8 12 12 C 1.38599 * 119.49169 * 179.70469 * 11 10 9 13 13 C 1.38389 * 118.67717 * 0.27987 * 12 11 10 14 14 C 1.40555 * 119.15427 * 359.97438 * 13 12 11 15 15 C 1.41314 * 119.78746 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99824 * 0.02562 * 15 14 13 17 17 C 1.40022 * 119.99881 * 180.02562 * 15 14 13 18 18 N 1.30746 * 120.00455 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99901 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46873 * 59.99749 * 19 17 15 21 21 H 1.48500 * 109.47032 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46772 * 299.99823 * 19 17 15 23 23 N 1.31953 * 119.58763 * 124.46420 * 10 9 8 24 24 C 1.46849 * 111.19353 * 298.25540 * 9 8 7 25 25 H 1.09001 * 109.47026 * 299.99586 * 1 2 3 26 26 H 1.08996 * 109.47436 * 59.99640 * 1 2 3 27 27 H 1.09008 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47364 * 60.00438 * 3 2 1 29 29 H 1.09002 * 109.47069 * 300.00195 * 3 2 1 30 30 H 1.08993 * 109.52463 * 297.51466 * 6 4 3 31 31 H 1.09001 * 109.52534 * 57.70943 * 6 4 3 32 32 H 1.09000 * 109.50103 * 62.28120 * 7 6 4 33 33 H 1.08994 * 109.50203 * 182.40376 * 7 6 4 34 34 H 1.08998 * 109.46375 * 299.16165 * 8 7 6 35 35 H 1.09006 * 109.46254 * 179.19599 * 8 7 6 36 36 H 1.08002 * 120.25806 * 359.97438 * 11 10 9 37 37 H 1.07992 * 120.65950 * 180.30760 * 12 11 10 38 38 H 1.07999 * 120.42372 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00462 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.46155 * 181.75494 * 24 9 8 41 41 H 1.08998 * 109.46508 * 301.72634 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8520 0.5671 0.8399 6 6 3.9975 0.5405 -1.3107 7 6 5.5273 0.4782 -1.3279 8 6 6.0924 1.8909 -1.1637 9 7 5.6222 2.4633 0.1043 10 6 6.2200 3.6924 0.3473 11 6 7.6145 3.7895 0.3681 12 6 8.2094 5.0187 0.6048 13 6 7.3978 6.1187 0.8206 14 6 6.0020 5.9559 0.7925 15 6 5.1607 7.0701 1.0106 16 1 5.5907 8.0430 1.1977 17 6 3.7696 6.9128 0.9842 18 7 3.2490 5.7352 0.7573 19 14 2.6575 8.3857 1.2732 20 1 2.9218 9.4163 0.2373 21 1 1.2379 7.9572 1.1936 22 1 2.9288 8.9544 2.6179 23 7 5.4650 4.7532 0.5609 24 6 4.1583 2.5770 0.1250 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.5910 -0.4681 -1.3839 31 1 3.6477 1.1372 -2.1532 32 1 5.8751 -0.1504 -0.5082 33 1 5.8638 0.0597 -2.2764 34 1 5.7554 2.5153 -1.9911 35 1 7.1816 1.8484 -1.1612 36 1 8.2236 2.9142 0.1967 37 1 9.2848 5.1162 0.6201 38 1 7.8314 7.0900 1.0073 39 1 2.2853 5.6261 0.7394 40 1 3.8426 3.0326 1.0635 41 1 3.8303 3.1981 -0.7085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325711020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:42 Heat of formation + Delta-G solvation = -11.865790 kcal Electronic energy + Delta-G solvation = -21955.603427 eV Core-core repulsion = 18835.189208 eV Total energy + Delta-G solvation = -3120.414219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.43559 -37.98376 -36.88685 -33.91186 -32.88465 -31.43964 -30.27342 -28.82111 -27.09111 -25.67478 -24.98536 -23.63148 -21.95166 -21.04616 -20.18433 -19.18908 -17.46447 -16.34109 -16.03333 -15.66202 -15.00616 -14.78338 -14.52283 -14.35091 -14.02919 -13.84295 -13.52077 -13.07227 -12.80255 -12.56114 -12.06283 -11.92176 -11.74037 -11.48448 -11.36185 -11.18800 -11.06679 -10.72195 -10.63814 -10.55590 -10.34906 -10.06088 -9.96510 -9.83670 -9.48631 -9.40814 -8.67321 -8.01688 -7.59709 -6.92484 -6.42808 -4.52883 2.74559 3.02438 3.05393 3.08346 3.21521 3.84750 3.92531 4.56062 4.79527 5.06434 5.17447 5.30135 5.33133 5.36408 5.57673 5.64112 5.69160 5.74740 5.82187 5.87213 6.04677 6.07529 6.09851 6.17305 6.22517 6.34331 6.43565 6.50126 6.61976 6.66182 6.77360 6.81400 6.95133 7.13687 7.16257 7.29854 7.50330 7.71384 7.80327 7.86048 8.19054 8.38418 8.69741 8.99125 10.08533 10.29242 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.006822 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.258434 B = 4103.269348 C = 5994.526525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.070 3.930 4 C -0.088 4.088 5 H 0.079 0.921 6 C -0.110 4.110 7 C -0.115 4.115 8 C 0.065 3.935 9 N -0.479 5.479 10 C 0.323 3.677 11 C -0.321 4.321 12 C -0.045 4.045 13 C -0.296 4.296 14 C 0.276 3.724 15 C -0.432 4.432 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.717 5.717 19 Si 0.905 3.095 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.508 5.508 24 C 0.089 3.911 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.095 0.905 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -7.982 -3.265 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.007 4.007 4 C -0.107 4.107 5 H 0.098 0.902 6 C -0.148 4.148 7 C -0.153 4.153 8 C -0.063 4.063 9 N -0.197 5.197 10 C 0.085 3.915 11 C -0.346 4.346 12 C -0.069 4.069 13 C -0.319 4.319 14 C 0.149 3.851 15 C -0.464 4.464 16 H 0.100 0.900 17 C -0.152 4.152 18 N -0.339 5.339 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.190 1.190 23 N -0.226 5.226 24 C -0.038 4.038 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.721 -8.672 -2.934 10.300 hybrid contribution 0.013 1.506 -0.363 1.549 sum -4.708 -7.166 -3.297 9.186 Atomic orbital electron populations 1.22682 0.81696 1.02148 0.99889 1.87840 1.19101 1.28774 1.95440 1.22518 0.93920 0.83742 1.00472 1.21287 0.92064 0.98548 0.98799 0.90236 1.21570 0.95381 1.00748 0.97096 1.21608 0.95678 0.96608 1.01437 1.22094 1.00127 0.94677 0.89353 1.59002 1.07777 1.21668 1.31295 1.19814 0.89632 0.88403 0.93675 1.20696 0.93605 0.97437 1.22830 1.20699 0.97371 0.92918 0.95959 1.21634 0.95110 0.97755 1.17438 1.18320 0.89024 0.90239 0.87477 1.19536 0.90543 0.94843 1.41479 0.89978 1.26013 0.99046 0.96580 0.93559 1.70109 1.12185 1.22558 1.29029 0.86432 0.78711 0.81944 0.79962 1.19047 1.20327 1.18977 1.68652 1.35875 0.97311 1.20745 1.21685 0.85354 0.92434 1.04373 0.94228 0.94360 0.90084 0.92881 0.93379 0.91672 0.92635 0.91265 0.91821 0.94786 0.90532 0.88693 0.88630 0.88536 0.91893 0.88636 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.72 10.30 -35.23 -0.36 -6.08 16 3 C 0.07 1.07 5.32 37.16 0.20 1.27 16 4 C -0.09 -1.45 2.59 -90.53 -0.23 -1.69 16 5 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 6 C -0.11 -1.63 5.16 -26.61 -0.14 -1.77 16 7 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 8 C 0.06 1.14 5.24 -3.83 -0.02 1.12 16 9 N -0.48 -10.05 4.67 -173.19 -0.81 -10.86 16 10 C 0.32 7.88 6.41 -155.33 -1.00 6.88 16 11 C -0.32 -7.41 9.20 -38.86 -0.36 -7.77 16 12 C -0.04 -1.03 10.15 -39.39 -0.40 -1.43 16 13 C -0.30 -7.38 9.83 -38.65 -0.38 -7.76 16 14 C 0.28 7.51 6.55 -85.00 -0.56 6.95 16 15 C -0.43 -11.43 9.14 -37.74 -0.34 -11.77 16 16 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.07 1.81 5.50 -17.35 -0.10 1.71 16 18 N -0.72 -18.10 11.46 55.55 0.64 -17.46 16 19 Si 0.91 18.31 29.56 -169.99 -5.02 13.29 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 N -0.51 -13.61 6.15 -10.33 -0.06 -13.67 16 24 C 0.09 1.80 3.93 -3.83 -0.02 1.79 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.31 6.66 -51.93 -0.35 0.96 16 36 H 0.09 1.99 7.13 -52.49 -0.37 1.61 16 37 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 40 H 0.10 2.21 7.69 -51.93 -0.40 1.81 16 41 H 0.05 1.07 8.11 -51.93 -0.42 0.65 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -28.26 330.75 -9.60 -37.86 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.57 Total: 4.76 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.39 Total: -12.82 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.24 Total: -41.99 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.36 Total: -6.08 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.26 -9.60 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325711020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.998 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds