Wall clock time and date at job start Mon Mar 30 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31790 * 119.08162 * 2 1 4 4 C 1.32545 * 121.01186 * 179.97438 * 3 2 1 5 5 C 1.38119 * 119.19761 * 359.75097 * 4 3 2 6 6 C 1.50702 * 120.83437 * 180.24860 * 5 4 3 7 7 C 1.39624 * 118.32868 * 0.47385 * 5 4 3 8 8 N 1.38548 * 120.52466 * 179.80462 * 7 5 4 9 9 C 1.46499 * 119.99633 * 179.97438 * 8 7 5 10 10 C 1.53048 * 109.46188 * 274.74783 * 9 8 7 11 11 C 1.53186 * 109.31159 * 178.59889 * 10 9 8 12 12 N 1.46921 * 108.76600 * 54.66164 * 11 10 9 13 13 C 1.36941 * 120.63528 * 126.35546 * 12 11 10 14 14 H 1.07998 * 120.00037 * 331.86504 * 13 12 11 15 15 C 1.38818 * 120.00053 * 151.85853 * 13 12 11 16 16 N 1.31615 * 119.99772 * 343.06870 * 15 13 12 17 17 Si 1.86797 * 119.99659 * 163.06275 * 15 13 12 18 18 H 1.48501 * 109.47317 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46843 * 120.00498 * 17 15 13 20 20 H 1.48496 * 109.47319 * 240.00142 * 17 15 13 21 21 C 1.46924 * 118.73633 * 306.37777 * 12 11 10 22 22 C 1.53046 * 109.46232 * 154.69511 * 9 8 7 23 23 N 1.31745 * 119.08248 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47061 * 270.01825 * 1 2 3 25 25 H 1.08993 * 109.46970 * 30.01843 * 1 2 3 26 26 H 1.08999 * 109.46892 * 150.01797 * 1 2 3 27 27 H 1.08001 * 120.39976 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46604 * 270.22687 * 6 5 4 29 29 H 1.08994 * 109.46763 * 30.22712 * 6 5 4 30 30 H 1.08994 * 109.46815 * 150.23089 * 6 5 4 31 31 H 0.96997 * 120.00241 * 359.71230 * 8 7 5 32 32 H 1.09004 * 109.46455 * 34.72058 * 9 8 7 33 33 H 1.08995 * 109.49695 * 298.57234 * 10 9 8 34 34 H 1.09005 * 109.49172 * 58.66380 * 10 9 8 35 35 H 1.08995 * 109.60462 * 294.87051 * 11 10 9 36 36 H 1.09010 * 109.69904 * 174.50634 * 11 10 9 37 37 H 0.97005 * 119.99247 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.58770 * 293.82150 * 21 12 11 39 39 H 1.09007 * 109.70654 * 173.46458 * 21 12 11 40 40 H 1.08996 * 109.49278 * 301.33593 * 22 9 8 41 41 H 1.09003 * 109.49482 * 61.39858 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4724 1.1964 0.0005 5 6 4.1864 0.0141 0.0063 6 6 5.6933 0.0218 0.0127 7 6 3.4768 -1.1884 0.0012 8 7 4.1471 -2.4010 0.0026 9 6 3.3911 -3.6558 -0.0022 10 6 3.0194 -4.0327 1.4339 11 6 2.1992 -5.3264 1.4220 12 7 2.9573 -6.3601 0.7042 13 6 3.2080 -7.5733 1.2878 14 1 3.2772 -7.6515 2.3627 15 6 3.3730 -8.7027 0.4977 16 7 2.9695 -8.6942 -0.7550 17 14 4.1680 -10.2345 1.2126 18 1 4.5299 -9.9881 2.6316 19 1 3.2135 -11.3695 1.1355 20 1 5.3921 -10.5638 0.4391 21 6 3.4419 -6.0673 -0.6516 22 6 4.2479 -4.7651 -0.6167 23 7 2.1475 -1.1513 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5136 27 1 3.9872 2.1458 0.0009 28 1 6.0609 0.0254 -1.0135 29 1 6.0498 0.9128 0.5295 30 1 6.0590 -0.8671 0.5265 31 1 5.1169 -2.4191 0.0029 32 1 2.4826 -3.5302 -0.5913 33 1 3.9278 -4.1828 2.0172 34 1 2.4289 -3.2318 1.8789 35 1 1.2494 -5.1526 0.9163 36 1 2.0140 -5.6535 2.4452 37 1 3.0852 -9.4834 -1.3071 38 1 2.5934 -5.9538 -1.3264 39 1 4.0782 -6.8816 -0.9984 40 1 4.5318 -4.4856 -1.6312 41 1 5.1449 -4.9079 -0.0141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326876511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:30 Heat of formation + Delta-G solvation = 61.663131 kcal Electronic energy + Delta-G solvation = -21585.977428 eV Core-core repulsion = 18501.044414 eV Total energy + Delta-G solvation = -3084.933014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94093 -38.10176 -35.74872 -34.07578 -32.99486 -31.42277 -30.16437 -29.97153 -29.14628 -25.80905 -25.16136 -23.43489 -22.34641 -21.65005 -21.52420 -19.34193 -17.73856 -17.22538 -16.69097 -15.30375 -15.16611 -14.81564 -14.41315 -14.14594 -13.87165 -13.60321 -13.51789 -13.15269 -13.11585 -12.88621 -12.60152 -12.31804 -12.28837 -12.23967 -11.53103 -11.34042 -11.12428 -10.84311 -10.75095 -10.55623 -10.40421 -10.20922 -10.00294 -9.77852 -9.58794 -9.36558 -8.96613 -8.50576 -7.84198 -6.70453 -5.81733 -3.23868 1.10382 1.52590 3.22437 3.35475 3.43451 3.45620 3.94244 4.17823 4.38303 4.47774 4.76028 4.94429 5.07668 5.31635 5.38635 5.39915 5.42972 5.50873 5.57389 5.60062 5.64701 5.74352 5.83150 5.91813 5.98458 6.05541 6.27632 6.36223 6.47460 6.53048 6.56245 6.69550 6.78410 6.94890 6.99985 7.28354 7.33717 7.59417 7.74130 7.78361 8.42495 8.46151 9.18756 9.81985 10.38943 11.27211 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.004014 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.468506 B = 6974.651217 C = 7435.468758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.352 3.648 3 N -0.570 5.570 4 C 0.173 3.827 5 C -0.275 4.275 6 C -0.093 4.093 7 C 0.447 3.553 8 N -0.701 5.701 9 C 0.158 3.842 10 C -0.136 4.136 11 C 0.149 3.851 12 N -0.592 5.592 13 C -0.252 4.252 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.176 3.824 22 C -0.148 4.148 23 N -0.567 5.567 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.405 0.595 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 17.463 0.314 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.083 3.917 3 N -0.289 5.289 4 C 0.011 3.989 5 C -0.285 4.285 6 C -0.151 4.151 7 C 0.202 3.798 8 N -0.331 5.331 9 C 0.055 3.945 10 C -0.177 4.177 11 C 0.022 3.978 12 N -0.315 5.315 13 C -0.382 4.382 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.049 3.951 22 C -0.188 4.188 23 N -0.292 5.292 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.176 0.824 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.456 17.107 0.206 17.170 hybrid contribution 1.826 -0.826 0.309 2.028 sum 3.282 16.281 0.515 16.616 Atomic orbital electron populations 1.20524 0.86187 1.03826 1.03631 1.22902 0.97607 0.82767 0.88432 1.68222 1.09659 1.29920 1.21133 1.22667 0.89462 0.97108 0.89682 1.20892 0.98205 0.93826 1.15618 1.20427 0.89997 1.02611 1.02046 1.18453 0.88460 0.86302 0.86622 1.45169 1.08536 1.02797 1.76625 1.21078 0.95193 0.80884 0.97380 1.22367 1.00610 0.98921 0.95774 1.20863 0.92674 0.87782 0.96510 1.44089 1.60748 1.12139 1.14549 1.19236 1.42945 0.84411 0.91595 0.91628 1.25048 1.00616 0.97353 0.96591 1.70036 1.48239 1.28997 1.07456 0.86236 0.78956 0.83140 0.78531 1.20263 1.21687 1.21574 1.20717 0.95691 0.92291 0.86357 1.22561 0.99663 0.97630 0.98959 1.67875 1.07413 1.30767 1.23130 0.89870 0.89946 0.89724 0.82413 0.91487 0.91290 0.92031 0.75758 0.89697 0.92684 0.92822 0.96124 0.92679 0.93656 0.96097 0.89073 0.92858 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.32 36.01 0.37 -0.54 16 2 C 0.35 5.08 7.64 -157.24 -1.20 3.88 16 3 N -0.57 -7.95 10.33 -10.81 -0.11 -8.06 16 4 C 0.17 2.07 10.99 -17.29 -0.19 1.88 16 5 C -0.27 -3.38 5.93 -104.15 -0.62 -3.99 16 6 C -0.09 -0.82 9.64 36.01 0.35 -0.47 16 7 C 0.45 6.64 7.47 -154.77 -1.16 5.49 16 8 N -0.70 -10.11 5.13 -53.73 -0.28 -10.39 16 9 C 0.16 2.72 2.45 -67.88 -0.17 2.55 16 10 C -0.14 -2.47 5.67 -26.61 -0.15 -2.62 16 11 C 0.15 3.16 6.52 -3.72 -0.02 3.14 16 12 N -0.59 -14.68 2.99 -172.32 -0.52 -15.20 16 13 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 14 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -25.90 11.19 55.49 0.62 -25.27 16 17 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.18 4.10 5.30 -3.71 -0.02 4.08 16 22 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 23 N -0.57 -9.10 9.24 -9.96 -0.09 -9.19 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.53 6.68 -51.93 -0.35 0.19 16 31 H 0.41 4.99 6.73 -40.82 -0.27 4.72 16 32 H 0.08 1.62 7.56 -51.93 -0.39 1.22 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 1.15 7.93 -51.92 -0.41 0.74 16 37 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 2.37 6.06 -51.92 -0.31 2.06 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -30.68 330.53 -9.97 -40.65 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.36 Total: 2.56 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.19 Total: 3.51 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.37 Total: -68.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.68 -9.97 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326876511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.312 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds