Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00589 * 2 1 4 4 H 1.09006 * 108.82585 * 331.49875 * 3 2 1 5 5 C 1.54166 * 108.77448 * 213.03922 * 3 2 1 6 6 C 1.53825 * 111.96719 * 197.73378 * 5 3 2 7 7 C 1.50813 * 111.62613 * 319.04554 * 6 5 3 8 8 N 1.47626 * 108.05517 * 95.05455 * 7 6 5 9 9 C 1.38818 * 111.00009 * 150.34961 * 8 7 6 10 10 C 1.39798 * 119.58496 * 294.21091 * 9 8 7 11 11 C 1.38601 * 119.49279 * 179.97438 * 10 9 8 12 12 C 1.38388 * 118.68087 * 359.74787 * 11 10 9 13 13 C 1.40560 * 119.14509 * 0.49939 * 12 11 10 14 14 C 1.41315 * 119.78071 * 179.76933 * 13 12 11 15 15 H 1.08002 * 120.00050 * 18.31909 * 14 13 12 16 16 C 1.40024 * 120.00012 * 198.32231 * 14 13 12 17 17 N 1.30744 * 120.00047 * 190.19716 * 16 14 13 18 18 Si 1.86802 * 119.99938 * 10.19019 * 16 14 13 19 19 H 1.48493 * 109.47355 * 275.25829 * 18 16 14 20 20 H 1.48504 * 109.47012 * 35.26326 * 18 16 14 21 21 H 1.48497 * 109.46808 * 155.25631 * 18 16 14 22 22 N 1.31957 * 119.58677 * 114.19389 * 9 8 7 23 23 C 1.39776 * 114.76097 * 277.20034 * 8 7 6 24 24 C 1.50751 * 108.85488 * 90.00029 * 3 2 1 25 25 H 1.09002 * 109.46688 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.47456 * 59.99758 * 1 2 3 27 27 H 1.09004 * 109.47436 * 180.02562 * 1 2 3 28 28 H 1.08990 * 108.98384 * 318.37566 * 5 3 2 29 29 H 1.08999 * 108.98237 * 77.18104 * 5 3 2 30 30 H 1.09005 * 109.04476 * 79.59682 * 6 5 3 31 31 H 1.09005 * 109.05125 * 198.56235 * 6 5 3 32 32 H 1.09003 * 109.74449 * 335.41649 * 7 6 5 33 33 H 1.09001 * 109.74369 * 214.69708 * 7 6 5 34 34 H 1.08001 * 120.25695 * 0.02562 * 10 9 8 35 35 H 1.08001 * 120.65801 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.42460 * 180.26794 * 12 11 10 37 37 H 0.97001 * 119.99667 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.02701 * 182.86813 * 23 8 7 39 39 H 1.09003 * 109.02112 * 301.68960 * 23 8 7 40 40 H 1.08998 * 109.54702 * 93.86227 * 24 3 2 41 41 H 1.09003 * 109.61797 * 333.63429 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3251 1.9956 -0.4923 5 6 3.3299 1.2608 -0.7958 6 6 4.2274 2.4722 -0.4902 7 6 3.4265 3.7461 -0.3901 8 7 3.1132 3.9790 1.0336 9 6 2.9988 5.3362 1.3022 10 6 4.1229 6.1594 1.1887 11 6 4.0063 7.5143 1.4568 12 6 2.7699 8.0142 1.8263 13 6 1.6784 7.1345 1.9280 14 6 0.4109 7.6298 2.3090 15 1 0.1995 8.6864 2.2352 16 6 -0.5710 6.7507 2.7821 17 7 -1.7990 7.1688 2.9453 18 14 -0.1264 4.9806 3.1800 19 1 -0.1872 4.1644 1.9410 20 1 1.2482 4.9292 3.7396 21 1 -1.0866 4.4410 4.1759 22 7 1.8302 5.8330 1.6612 23 6 2.0018 3.2785 1.5107 24 6 2.2085 1.7504 1.4266 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.8675 0.3478 -0.5401 29 1 3.1011 1.2506 -1.8615 30 1 4.7449 2.3022 0.4540 31 1 4.9649 2.5783 -1.2858 32 1 2.5020 3.6455 -0.9589 33 1 4.0105 4.5798 -0.7799 34 1 5.0747 5.7432 0.8935 35 1 4.8624 8.1676 1.3746 36 1 2.6462 9.0661 2.0375 37 1 -2.4790 6.5599 3.2734 38 1 1.8257 3.5566 2.5498 39 1 1.1285 3.5519 0.9184 40 1 3.2193 1.5009 1.7494 41 1 1.4859 1.2487 2.0703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327968773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = -5.812967 kcal Electronic energy + Delta-G solvation = -22440.446789 eV Core-core repulsion = 19320.295040 eV Total energy + Delta-G solvation = -3120.151749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21613 -38.51855 -36.91599 -33.98162 -33.31241 -31.83899 -31.00969 -29.56778 -27.07487 -25.80360 -25.64968 -24.34290 -22.26335 -21.07397 -20.31703 -19.49590 -17.72750 -17.21016 -16.46317 -15.51535 -15.44675 -15.21935 -14.73160 -14.61778 -14.36767 -13.92821 -13.62955 -13.36603 -12.96448 -12.66919 -12.53747 -12.11513 -11.92220 -11.80195 -11.49060 -11.37511 -11.06700 -10.87152 -10.79627 -10.70696 -10.53817 -10.48161 -10.22520 -9.92817 -9.46079 -9.27006 -8.82014 -8.48086 -7.91227 -7.26501 -6.93611 -4.72148 2.43826 2.60779 3.31515 3.39609 3.50181 3.72391 4.14161 4.25707 4.49779 4.79990 4.92425 5.12093 5.21290 5.26640 5.35071 5.37953 5.48413 5.49819 5.60955 5.63479 5.74489 5.78535 5.87736 5.92822 6.00546 6.06041 6.13980 6.24475 6.33106 6.38998 6.47462 6.53488 6.57724 6.65295 7.04748 7.21765 7.25587 7.47478 7.50173 7.74449 7.94949 8.15984 8.56368 8.58537 9.48748 9.98850 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.007561 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.033504 B = 3702.380535 C = 5052.276772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.391 6.391 3 C 0.088 3.912 4 H 0.056 0.944 5 C -0.112 4.112 6 C -0.115 4.115 7 C 0.068 3.932 8 N -0.492 5.492 9 C 0.343 3.657 10 C -0.304 4.304 11 C -0.037 4.037 12 C -0.272 4.272 13 C 0.265 3.735 14 C -0.416 4.416 15 H 0.096 0.904 16 C 0.083 3.917 17 N -0.802 5.802 18 Si 0.986 3.014 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.329 1.329 22 N -0.595 5.595 23 C 0.065 3.935 24 C -0.142 4.142 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.287 0.713 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 -10.631 -5.638 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.311 6.311 3 C 0.031 3.969 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.057 4.057 8 N -0.211 5.211 9 C 0.109 3.891 10 C -0.329 4.329 11 C -0.062 4.062 12 C -0.295 4.295 13 C 0.141 3.859 14 C -0.447 4.447 15 H 0.114 0.886 16 C -0.139 4.139 17 N -0.426 5.426 18 Si 0.821 3.179 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.262 1.262 22 N -0.319 5.319 23 C -0.064 4.064 24 C -0.180 4.180 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.842 -11.462 -5.302 13.915 hybrid contribution -0.143 0.423 -0.157 0.473 sum 5.699 -11.039 -5.460 13.570 Atomic orbital electron populations 1.22774 0.81359 1.02293 1.00237 1.87866 1.19432 1.28526 1.95230 1.22162 0.95114 0.83938 0.95712 0.92635 1.21930 0.94666 0.99146 0.99197 1.21411 0.97783 0.93142 1.02949 1.21936 0.99475 0.98360 0.85944 1.56436 1.40745 1.05950 1.17931 1.19419 0.89483 0.87159 0.93042 1.20618 0.97527 0.93966 1.20752 1.20858 0.96368 0.94346 0.94593 1.21591 0.93517 0.99876 1.14506 1.18346 0.93272 0.86012 0.88293 1.19480 0.93430 0.96933 1.34852 0.88574 1.26378 0.93451 1.03157 0.90891 1.69639 1.02311 1.39020 1.31602 0.85144 0.76139 0.79193 0.77417 1.18962 1.19511 1.26177 1.66880 1.23179 1.15918 1.25922 1.21419 0.91562 0.91561 1.01870 1.22089 1.03572 0.95767 0.96575 0.93914 0.94186 0.89866 0.91025 0.91966 0.90122 0.91188 0.93694 0.89817 0.87650 0.87738 0.87494 0.90243 0.90091 0.93598 0.90148 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.71 101.05 1.08 1.44 16 2 O -0.39 -5.53 10.20 -35.23 -0.36 -5.89 16 3 C 0.09 1.26 2.13 -27.25 -0.06 1.20 16 4 H 0.06 0.84 6.16 -51.93 -0.32 0.52 16 5 C -0.11 -1.36 5.54 -25.69 -0.14 -1.50 16 6 C -0.11 -1.42 5.41 -27.40 -0.15 -1.57 16 7 C 0.07 1.06 5.21 -4.52 -0.02 1.04 16 8 N -0.49 -9.34 3.93 -178.26 -0.70 -10.04 16 9 C 0.34 7.62 6.05 -155.33 -0.94 6.68 16 10 C -0.30 -6.27 9.02 -38.86 -0.35 -6.62 16 11 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.27 -6.31 9.83 -38.65 -0.38 -6.69 16 13 C 0.27 6.86 6.12 -85.00 -0.52 6.34 16 14 C -0.42 -11.36 9.68 -37.74 -0.37 -11.72 16 15 H 0.10 2.67 8.06 -52.49 -0.42 2.25 16 16 C 0.08 2.24 5.52 -17.35 -0.10 2.15 16 17 N -0.80 -21.61 13.92 55.55 0.77 -20.83 16 18 Si 0.99 23.92 22.47 -169.99 -3.82 20.10 16 19 H -0.26 -6.18 4.95 56.52 0.28 -5.90 16 20 H -0.27 -6.83 6.14 56.52 0.35 -6.48 16 21 H -0.33 -7.81 7.11 56.52 0.40 -7.41 16 22 N -0.60 -14.90 4.38 -10.33 -0.05 -14.94 16 23 C 0.06 1.25 3.06 -6.74 -0.02 1.23 16 24 C -0.14 -2.22 5.32 -27.11 -0.14 -2.36 16 25 H 0.04 0.52 7.84 -51.93 -0.41 0.11 16 26 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.05 7.26 -51.93 -0.38 0.68 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.72 6.66 -51.93 -0.35 0.37 16 33 H 0.08 1.28 7.01 -51.93 -0.36 0.91 16 34 H 0.11 1.92 7.97 -52.49 -0.42 1.50 16 35 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.29 7.07 8.29 -40.82 -0.34 6.73 16 38 H 0.08 1.76 4.46 -51.93 -0.23 1.53 16 39 H 0.05 0.98 5.64 -51.93 -0.29 0.68 16 40 H 0.08 1.21 7.11 -51.93 -0.37 0.84 16 41 H 0.07 1.11 7.61 -51.93 -0.39 0.72 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -28.61 307.67 -8.23 -36.84 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.21 Total: 1.69 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.51 Total: -11.57 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.03 Total: -45.82 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.36 Total: -5.89 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -3.82 Total: 20.10 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.61 -8.23 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327968773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.030 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds