Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00589 * 2 1 4 4 H 1.09006 * 108.82585 * 331.49875 * 3 2 1 5 5 C 1.54166 * 108.77448 * 213.03922 * 3 2 1 6 6 C 1.53825 * 111.96719 * 197.73378 * 5 3 2 7 7 C 1.50813 * 111.62613 * 319.04554 * 6 5 3 8 8 N 1.47626 * 108.05517 * 95.05455 * 7 6 5 9 9 C 1.38818 * 111.00009 * 150.34961 * 8 7 6 10 10 C 1.39798 * 119.58496 * 294.21091 * 9 8 7 11 11 C 1.38601 * 119.49279 * 179.97438 * 10 9 8 12 12 C 1.38388 * 118.68087 * 359.74787 * 11 10 9 13 13 C 1.40560 * 119.14509 * 0.49939 * 12 11 10 14 14 C 1.41315 * 119.78071 * 179.76933 * 13 12 11 15 15 H 1.08002 * 120.00050 * 18.31909 * 14 13 12 16 16 C 1.40024 * 120.00012 * 198.32231 * 14 13 12 17 17 N 1.30744 * 120.00047 * 190.19716 * 16 14 13 18 18 Si 1.86802 * 119.99938 * 10.19019 * 16 14 13 19 19 H 1.48493 * 109.47355 * 275.25829 * 18 16 14 20 20 H 1.48504 * 109.47012 * 35.26326 * 18 16 14 21 21 H 1.48497 * 109.46808 * 155.25631 * 18 16 14 22 22 N 1.31957 * 119.58677 * 114.19389 * 9 8 7 23 23 C 1.39776 * 114.76097 * 277.20034 * 8 7 6 24 24 C 1.50751 * 108.85488 * 90.00029 * 3 2 1 25 25 H 1.09002 * 109.46688 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.47456 * 59.99758 * 1 2 3 27 27 H 1.09004 * 109.47436 * 180.02562 * 1 2 3 28 28 H 1.08990 * 108.98384 * 318.37566 * 5 3 2 29 29 H 1.08999 * 108.98237 * 77.18104 * 5 3 2 30 30 H 1.09005 * 109.04476 * 79.59682 * 6 5 3 31 31 H 1.09005 * 109.05125 * 198.56235 * 6 5 3 32 32 H 1.09003 * 109.74449 * 335.41649 * 7 6 5 33 33 H 1.09001 * 109.74369 * 214.69708 * 7 6 5 34 34 H 1.08001 * 120.25695 * 0.02562 * 10 9 8 35 35 H 1.08001 * 120.65801 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.42460 * 180.26794 * 12 11 10 37 37 H 0.97001 * 119.99667 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.02701 * 182.86813 * 23 8 7 39 39 H 1.09003 * 109.02112 * 301.68960 * 23 8 7 40 40 H 1.08998 * 109.54702 * 93.86227 * 24 3 2 41 41 H 1.09003 * 109.61797 * 333.63429 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3251 1.9956 -0.4923 5 6 3.3299 1.2608 -0.7958 6 6 4.2274 2.4722 -0.4902 7 6 3.4265 3.7461 -0.3901 8 7 3.1132 3.9790 1.0336 9 6 2.9988 5.3362 1.3022 10 6 4.1229 6.1594 1.1887 11 6 4.0063 7.5143 1.4568 12 6 2.7699 8.0142 1.8263 13 6 1.6784 7.1345 1.9280 14 6 0.4109 7.6298 2.3090 15 1 0.1995 8.6864 2.2352 16 6 -0.5710 6.7507 2.7821 17 7 -1.7990 7.1688 2.9453 18 14 -0.1264 4.9806 3.1800 19 1 -0.1872 4.1644 1.9410 20 1 1.2482 4.9292 3.7396 21 1 -1.0866 4.4410 4.1759 22 7 1.8302 5.8330 1.6612 23 6 2.0018 3.2785 1.5107 24 6 2.2085 1.7504 1.4266 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.8675 0.3478 -0.5401 29 1 3.1011 1.2506 -1.8615 30 1 4.7449 2.3022 0.4540 31 1 4.9649 2.5783 -1.2858 32 1 2.5020 3.6455 -0.9589 33 1 4.0105 4.5798 -0.7799 34 1 5.0747 5.7432 0.8935 35 1 4.8624 8.1676 1.3746 36 1 2.6462 9.0661 2.0375 37 1 -2.4790 6.5599 3.2734 38 1 1.8257 3.5566 2.5498 39 1 1.1285 3.5519 0.9184 40 1 3.2193 1.5009 1.7494 41 1 1.4859 1.2487 2.0703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327968773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = -23.495408 kcal Electronic energy + Delta-G solvation = -22441.213557 eV Core-core repulsion = 19320.295040 eV Total energy + Delta-G solvation = -3120.918517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71031 -39.94651 -38.29722 -35.68254 -34.78106 -33.33231 -32.64795 -31.24131 -28.29990 -27.51297 -26.82154 -25.68108 -23.79342 -22.83558 -21.83911 -20.60940 -19.64262 -18.79066 -17.66446 -16.92441 -16.79677 -16.66919 -16.48201 -16.12151 -15.87527 -15.42238 -14.75037 -14.62696 -14.53715 -14.44045 -14.16753 -13.49135 -13.25465 -13.12008 -13.04144 -12.92174 -12.66363 -12.45264 -12.38087 -12.09798 -11.92061 -11.80610 -11.62626 -11.36962 -11.19020 -10.59166 -10.50732 -10.25137 -9.77604 -9.00483 -8.91224 -6.72858 0.61963 0.82027 1.31976 1.44448 1.52768 2.28125 2.52237 2.66262 2.74615 3.52592 3.67922 3.78950 3.93986 3.99127 4.11596 4.20517 4.25803 4.38751 4.42091 4.44547 4.49851 4.58628 4.64766 4.69361 4.71296 4.75046 4.78336 4.81778 4.91352 5.00334 5.08324 5.15339 5.22351 5.26117 5.43889 5.50297 5.72984 5.86120 5.91873 6.17027 6.17728 6.27224 6.59717 6.72781 7.63412 8.04261 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.007561 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.033504 B = 3702.380535 C = 5052.276772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.088 3.912 4 H 0.041 0.959 5 C -0.107 4.107 6 C -0.105 4.105 7 C 0.066 3.934 8 N -0.487 5.487 9 C 0.321 3.679 10 C -0.283 4.283 11 C -0.027 4.027 12 C -0.290 4.290 13 C 0.250 3.750 14 C -0.456 4.456 15 H 0.073 0.927 16 C 0.054 3.946 17 N -0.838 5.838 18 Si 1.035 2.965 19 H -0.260 1.260 20 H -0.289 1.289 21 H -0.324 1.324 22 N -0.614 5.614 23 C 0.071 3.929 24 C -0.132 4.132 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.294 0.706 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.091 0.909 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -12.582 -7.109 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.031 3.969 4 H 0.059 0.941 5 C -0.144 4.144 6 C -0.143 4.143 7 C -0.058 4.058 8 N -0.206 5.206 9 C 0.088 3.912 10 C -0.307 4.307 11 C -0.051 4.051 12 C -0.312 4.312 13 C 0.124 3.876 14 C -0.489 4.489 15 H 0.092 0.908 16 C -0.164 4.164 17 N -0.464 5.464 18 Si 0.869 3.131 19 H -0.186 1.186 20 H -0.217 1.217 21 H -0.256 1.256 22 N -0.338 5.338 23 C -0.058 4.058 24 C -0.170 4.170 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.110 0.890 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.987 -13.433 -6.795 17.532 hybrid contribution -0.875 1.005 0.210 1.349 sum 8.111 -12.428 -6.585 16.236 Atomic orbital electron populations 1.22950 0.80362 1.03899 1.00049 1.87854 1.20574 1.28157 1.95188 1.22137 0.96207 0.83865 0.94700 0.94114 1.21929 0.93380 0.99572 0.99564 1.21367 0.97684 0.91201 1.04071 1.22128 0.99760 1.00505 0.83449 1.56646 1.39869 1.03978 1.20058 1.20024 0.89345 0.88969 0.92836 1.21128 0.98213 0.93845 1.17503 1.21341 0.96554 0.94989 0.92259 1.21792 0.94079 1.00134 1.15171 1.18497 0.93569 0.87057 0.88427 1.19462 0.95149 0.96106 1.38155 0.90844 1.26852 0.93455 1.05201 0.90883 1.69650 1.02827 1.40014 1.33900 0.84450 0.74609 0.76824 0.77186 1.18591 1.21679 1.25633 1.66789 1.25092 1.15729 1.26209 1.21249 0.90917 0.94086 0.99571 1.22014 1.04206 0.92768 0.98007 0.94780 0.93752 0.87422 0.89827 0.90622 0.90342 0.87979 0.94464 0.89089 0.84025 0.83180 0.86780 0.89567 0.93015 0.96224 0.89029 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.71 113.37 1.21 1.73 16 2 O -0.40 -10.37 10.20 -148.98 -1.52 -11.89 16 3 C 0.09 2.34 2.13 30.26 0.06 2.40 16 4 H 0.04 1.20 6.16 -2.38 -0.01 1.18 16 5 C -0.11 -2.21 5.54 31.27 0.17 -2.03 16 6 C -0.11 -2.15 5.41 30.16 0.16 -1.99 16 7 C 0.07 1.85 5.21 85.45 0.45 2.29 16 8 N -0.49 -17.56 3.93 -717.88 -2.82 -20.38 16 9 C 0.32 13.76 6.05 133.42 0.81 14.57 16 10 C -0.28 -10.59 9.02 22.73 0.21 -10.38 16 11 C -0.03 -1.02 10.15 22.39 0.23 -0.80 16 12 C -0.29 -13.19 9.83 22.87 0.22 -12.96 16 13 C 0.25 13.22 6.12 40.18 0.25 13.46 16 14 C -0.46 -26.27 9.68 23.46 0.23 -26.04 16 15 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 16 C 0.05 3.04 5.52 85.29 0.47 3.51 16 17 N -0.84 -47.39 13.92 21.84 0.30 -47.09 16 18 Si 1.03 51.59 22.47 68.60 1.54 53.13 16 19 H -0.26 -12.54 4.95 99.48 0.49 -12.05 16 20 H -0.29 -15.13 6.14 99.48 0.61 -14.52 16 21 H -0.32 -15.48 7.11 99.48 0.71 -14.78 16 22 N -0.61 -30.95 4.38 -186.58 -0.82 -31.77 16 23 C 0.07 2.71 3.06 88.07 0.27 2.98 16 24 C -0.13 -3.92 5.32 30.35 0.16 -3.76 16 25 H 0.03 0.80 7.84 -2.39 -0.02 0.78 16 26 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 27 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.70 7.26 -2.38 -0.02 1.68 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.50 16 32 H 0.04 1.11 6.66 -2.39 -0.02 1.10 16 33 H 0.09 2.41 7.01 -2.39 -0.02 2.39 16 34 H 0.14 4.32 7.97 -2.91 -0.02 4.30 16 35 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.29 15.14 8.29 -92.71 -0.77 14.37 16 38 H 0.05 2.27 4.46 -2.39 -0.01 2.26 16 39 H 0.02 0.85 5.64 -2.39 -0.01 0.84 16 40 H 0.09 2.52 7.11 -2.39 -0.02 2.50 16 41 H 0.07 2.16 7.61 -2.39 -0.02 2.15 16 Total: -1.00 -64.45 307.67 2.30 -62.15 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.71 Total: 12.86 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.90 Total: -17.02 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.33 Total: -99.24 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.52 Total: -11.89 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.54 Total: 53.13 kcal Total: -64.45 2.30 -62.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327968773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.655 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds