Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47042 * 2 1 4 4 C 1.52989 * 109.47535 * 239.99510 * 2 1 3 5 5 N 1.46898 * 109.47179 * 64.99938 * 4 2 1 6 6 C 1.46905 * 111.00172 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47306 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46789 * 55.00153 * 7 6 5 9 9 C 1.47201 * 109.46611 * 295.00517 * 7 6 5 10 10 N 5.62763 * 64.43209 * 272.23157 * 2 1 3 11 11 C 1.52992 * 109.47251 * 175.00225 * 7 6 5 12 12 C 1.50701 * 109.47310 * 185.00174 * 11 7 6 13 13 H 1.08004 * 119.99455 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00151 * 179.97438 * 12 11 7 15 15 N 1.31511 * 120.00068 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00124 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47103 * 119.99969 * 16 14 12 19 19 H 1.48502 * 109.47221 * 240.00393 * 16 14 12 20 20 C 1.53008 * 109.46659 * 119.99424 * 2 1 3 21 21 N 1.46499 * 109.47114 * 294.99969 * 20 2 1 22 22 C 1.36883 * 126.40238 * 270.00082 * 21 20 2 23 23 C 1.34666 * 106.81734 * 179.97438 * 22 21 20 24 24 N 1.34126 * 108.02240 * 359.97438 * 23 22 21 25 25 C 1.30494 * 109.25549 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47654 * 300.00369 * 1 2 3 28 28 H 1.08999 * 109.46722 * 60.00584 * 1 2 3 29 29 H 1.08999 * 109.47471 * 185.00423 * 4 2 1 30 30 H 1.09001 * 109.47376 * 305.00057 * 4 2 1 31 31 H 1.00895 * 111.00470 * 303.95495 * 5 4 2 32 32 H 1.08996 * 109.47040 * 300.00162 * 6 5 4 33 33 H 1.09003 * 109.46981 * 60.00028 * 6 5 4 34 34 H 1.09004 * 109.46934 * 305.00006 * 11 7 6 35 35 H 1.09001 * 109.46922 * 64.99608 * 11 7 6 36 36 H 0.96995 * 119.99991 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.46700 * 175.00372 * 20 2 1 38 38 H 1.09001 * 109.47063 * 55.00446 * 20 2 1 39 39 H 1.08000 * 126.58593 * 359.94892 * 22 21 20 40 40 H 1.07998 * 125.98447 * 179.97438 * 23 22 21 41 41 H 1.08006 * 125.64795 * 180.26456 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0372 -2.4455 6 6 2.1260 -0.6268 -3.6670 7 6 1.7037 0.1912 -4.8891 8 1 2.0633 1.2147 -4.7832 9 6 0.2354 0.1952 -4.9932 10 7 -0.8988 0.1977 -5.0727 11 6 2.3028 -0.4317 -6.1516 12 6 1.9899 0.4411 -7.3396 13 1 1.4203 1.3491 -7.2073 14 6 2.4308 0.0805 -8.5952 15 7 3.1249 -1.0249 -8.7560 16 14 2.0424 1.1620 -10.0678 17 1 1.2548 2.3398 -9.6230 18 1 3.3088 1.6213 -10.6925 19 1 1.2550 0.3851 -11.0586 20 6 2.0399 -0.7212 1.2494 21 7 1.6523 0.0356 2.4424 22 6 2.3788 1.0248 3.0485 23 6 1.6571 1.4472 4.1041 24 7 0.5207 0.7357 4.1413 25 6 0.5110 -0.1119 3.1491 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.1264 -0.7996 -1.2054 30 1 1.6055 -1.7199 -1.2950 31 1 0.6530 0.1791 -2.4753 32 1 3.2129 -0.7039 -3.6398 33 1 1.6924 -1.6249 -3.7298 34 1 3.3836 -0.5161 -6.0373 35 1 1.8754 -1.4225 -6.3059 36 1 3.4348 -1.2788 -9.6394 37 1 3.1262 -0.7994 1.2058 38 1 1.6053 -1.7197 1.2953 39 1 3.3452 1.3950 2.7397 40 1 1.9433 2.2228 4.7989 41 1 -0.2809 -0.8120 2.9270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335943005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 69.165394 kcal Electronic energy + Delta-G solvation = -20224.440803 eV Core-core repulsion = 17139.833111 eV Total energy + Delta-G solvation = -3084.607692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27936 -38.18333 -36.70135 -34.78427 -33.63478 -32.39631 -30.91187 -29.59792 -27.41157 -26.95962 -24.84868 -22.69556 -21.92404 -21.55415 -21.24878 -20.43174 -17.72498 -16.82216 -16.72845 -16.00224 -15.77278 -15.09724 -14.87150 -14.45578 -14.20357 -14.08778 -13.73269 -13.46154 -13.35749 -13.00098 -12.88556 -12.64296 -12.47885 -12.14211 -11.82599 -11.75177 -11.32689 -11.20239 -11.18450 -11.06246 -10.79365 -10.56385 -10.33062 -10.19141 -9.83733 -9.59631 -9.26892 -8.73069 -8.51459 -8.47468 -6.14553 -4.17755 1.83669 2.52706 2.97942 3.25182 3.33591 3.38111 3.48459 3.54080 4.01686 4.20999 4.37272 4.48147 4.50741 4.59630 4.71499 4.73370 4.83130 4.97071 5.20167 5.23532 5.23743 5.35958 5.37492 5.47551 5.52830 5.59958 5.63950 5.86057 5.92168 6.05181 6.05502 6.26743 6.46691 6.51698 6.92052 6.97445 7.27863 7.37357 7.46435 7.80661 7.86367 8.17681 8.32371 8.87047 9.48143 10.96371 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041930 B = 0.002605 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.614909 B =10745.093761 C =10931.960127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 H 0.089 0.911 4 C 0.065 3.935 5 N -0.692 5.692 6 C 0.067 3.933 7 C 0.007 3.993 8 H 0.111 0.889 9 C 0.240 3.760 10 N -0.476 5.476 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.108 3.892 21 N -0.453 5.453 22 C -0.054 4.054 23 C -0.035 4.035 24 N -0.499 5.499 25 C 0.181 3.819 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.339 0.661 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -0.662 21.315 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.065 4.065 5 N -0.324 5.324 6 C -0.062 4.062 7 C -0.015 4.015 8 H 0.129 0.871 9 C -0.077 4.077 10 N -0.153 5.153 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.015 4.015 21 N -0.135 5.135 22 C -0.187 4.187 23 C -0.182 4.182 24 N -0.217 5.217 25 C -0.101 4.101 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.158 0.842 32 H 0.111 0.889 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.190 0.810 40 H 0.184 0.816 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.267 -0.336 21.560 21.564 hybrid contribution 0.306 -0.302 -1.718 1.771 sum 0.573 -0.637 19.842 19.860 Atomic orbital electron populations 1.21939 0.94587 1.02012 1.02801 1.21533 0.96856 1.01362 0.92781 0.89222 1.21873 1.00919 0.94551 0.89120 1.60572 1.19953 1.50199 1.01639 1.22090 1.01535 0.95178 0.87433 1.19335 0.81554 1.03080 0.97568 0.87099 1.29373 0.95224 0.91875 0.91219 1.81083 1.13480 1.10142 1.10549 1.19169 0.96762 0.96323 0.88388 1.21178 1.34939 1.08183 0.92155 0.92441 1.24956 0.94854 0.95154 0.99042 1.69940 1.36735 1.23120 1.23228 0.86531 0.78183 0.80694 0.82655 1.19668 1.20787 1.20974 1.21985 1.01933 0.95118 0.82469 1.45562 1.16617 1.28772 1.22580 1.22768 1.00817 0.96321 0.98782 1.22296 0.92603 1.03325 1.00011 1.70291 1.22076 1.08223 1.21136 1.24941 0.91091 1.02556 0.91551 0.92565 0.92200 0.91659 0.90344 0.94873 0.84171 0.88943 0.94616 0.94178 0.95753 0.92816 0.88672 0.88782 0.80961 0.81550 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.66 37.16 0.32 -0.97 16 2 C -0.11 -0.79 2.80 -90.62 -0.25 -1.04 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.07 0.56 5.14 -3.83 -0.02 0.54 16 5 N -0.69 -8.04 6.49 -113.78 -0.74 -8.78 16 6 C 0.07 0.91 5.12 -3.82 -0.02 0.89 16 7 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 8 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 9 C 0.24 4.68 12.98 -20.73 -0.27 4.41 16 10 N -0.48 -10.07 18.54 42.19 0.78 -9.29 16 11 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 12 C -0.53 -13.77 8.60 -34.44 -0.30 -14.07 16 13 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.11 0.63 5.58 -4.04 -0.02 0.60 16 21 N -0.45 -3.60 2.57 -118.57 -0.31 -3.90 16 22 C -0.05 -0.44 11.58 -16.56 -0.19 -0.64 16 23 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 24 N -0.50 -5.86 11.25 -14.67 -0.17 -6.03 16 25 C 0.18 1.67 10.85 -90.38 -0.98 0.69 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.52 6.49 -51.93 -0.34 0.19 16 28 H 0.06 0.64 6.68 -51.93 -0.35 0.29 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.34 4.22 6.06 -39.29 -0.24 3.99 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -31.53 347.36 -8.24 -39.77 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.37 Total: -0.59 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.39 Total: -8.06 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.31 Total: -52.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.53 -8.24 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335943005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.934 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds