Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47042 * 2 1 4 4 C 1.52989 * 109.47535 * 239.99510 * 2 1 3 5 5 N 1.46898 * 109.47179 * 64.99938 * 4 2 1 6 6 C 1.46905 * 111.00172 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47306 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46789 * 55.00153 * 7 6 5 9 9 C 1.47201 * 109.46611 * 295.00517 * 7 6 5 10 10 N 5.62763 * 64.43209 * 272.23157 * 2 1 3 11 11 C 1.52992 * 109.47251 * 175.00225 * 7 6 5 12 12 C 1.50701 * 109.47310 * 185.00174 * 11 7 6 13 13 H 1.08004 * 119.99455 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00151 * 179.97438 * 12 11 7 15 15 N 1.31511 * 120.00068 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00124 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47103 * 119.99969 * 16 14 12 19 19 H 1.48502 * 109.47221 * 240.00393 * 16 14 12 20 20 C 1.53008 * 109.46659 * 119.99424 * 2 1 3 21 21 N 1.46499 * 109.47114 * 294.99969 * 20 2 1 22 22 C 1.36883 * 126.40238 * 270.00082 * 21 20 2 23 23 C 1.34666 * 106.81734 * 179.97438 * 22 21 20 24 24 N 1.34126 * 108.02240 * 359.97438 * 23 22 21 25 25 C 1.30494 * 109.25549 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47654 * 300.00369 * 1 2 3 28 28 H 1.08999 * 109.46722 * 60.00584 * 1 2 3 29 29 H 1.08999 * 109.47471 * 185.00423 * 4 2 1 30 30 H 1.09001 * 109.47376 * 305.00057 * 4 2 1 31 31 H 1.00895 * 111.00470 * 303.95495 * 5 4 2 32 32 H 1.08996 * 109.47040 * 300.00162 * 6 5 4 33 33 H 1.09003 * 109.46981 * 60.00028 * 6 5 4 34 34 H 1.09004 * 109.46934 * 305.00006 * 11 7 6 35 35 H 1.09001 * 109.46922 * 64.99608 * 11 7 6 36 36 H 0.96995 * 119.99991 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.46700 * 175.00372 * 20 2 1 38 38 H 1.09001 * 109.47063 * 55.00446 * 20 2 1 39 39 H 1.08000 * 126.58593 * 359.94892 * 22 21 20 40 40 H 1.07998 * 125.98447 * 179.97438 * 23 22 21 41 41 H 1.08006 * 125.64795 * 180.26456 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0372 -2.4455 6 6 2.1260 -0.6268 -3.6670 7 6 1.7037 0.1912 -4.8891 8 1 2.0633 1.2147 -4.7832 9 6 0.2354 0.1952 -4.9932 10 7 -0.8988 0.1977 -5.0727 11 6 2.3028 -0.4317 -6.1516 12 6 1.9899 0.4411 -7.3396 13 1 1.4203 1.3491 -7.2073 14 6 2.4308 0.0805 -8.5952 15 7 3.1249 -1.0249 -8.7560 16 14 2.0424 1.1620 -10.0678 17 1 1.2548 2.3398 -9.6230 18 1 3.3088 1.6213 -10.6925 19 1 1.2550 0.3851 -11.0586 20 6 2.0399 -0.7212 1.2494 21 7 1.6523 0.0356 2.4424 22 6 2.3788 1.0248 3.0485 23 6 1.6571 1.4472 4.1041 24 7 0.5207 0.7357 4.1413 25 6 0.5110 -0.1119 3.1491 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.1264 -0.7996 -1.2054 30 1 1.6055 -1.7199 -1.2950 31 1 0.6530 0.1791 -2.4753 32 1 3.2129 -0.7039 -3.6398 33 1 1.6924 -1.6249 -3.7298 34 1 3.3836 -0.5161 -6.0373 35 1 1.8754 -1.4225 -6.3059 36 1 3.4348 -1.2788 -9.6394 37 1 3.1262 -0.7994 1.2058 38 1 1.6053 -1.7197 1.2953 39 1 3.3452 1.3950 2.7397 40 1 1.9433 2.2228 4.7989 41 1 -0.2809 -0.8120 2.9270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335943005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = 50.888013 kcal Electronic energy + Delta-G solvation = -20225.233370 eV Core-core repulsion = 17139.833111 eV Total energy + Delta-G solvation = -3085.400259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.91149 -39.19658 -37.85433 -36.00209 -35.22528 -33.66272 -32.10759 -30.25984 -28.56520 -27.91106 -25.96259 -23.90459 -23.55902 -22.22432 -21.91510 -21.05269 -18.56460 -18.33322 -18.23420 -17.07220 -16.62008 -16.41806 -15.75509 -15.55711 -14.99062 -14.88785 -14.81169 -14.60973 -14.33125 -14.21601 -13.93505 -13.79225 -13.66408 -13.38101 -13.15938 -13.05641 -12.67848 -12.54390 -12.47913 -12.22073 -12.01847 -11.88005 -11.74759 -11.39746 -11.14783 -10.88520 -10.56228 -10.46165 -9.38641 -9.37426 -8.20700 -6.28412 1.21002 1.38167 1.41593 1.51517 1.92214 1.94365 1.97705 2.27990 2.40621 3.14699 3.17952 3.24730 3.72705 3.89406 3.91578 3.93383 4.14698 4.20945 4.28640 4.41528 4.46692 4.63262 4.65654 4.68413 4.76290 4.83159 4.88615 4.94534 4.97673 5.02358 5.24157 5.26559 5.43993 5.47275 5.62787 5.78996 5.88813 6.02731 6.21215 6.32321 6.36007 6.74231 6.86930 7.20494 7.40295 8.90291 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041930 B = 0.002605 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.614909 B =10745.093761 C =10931.960127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.066 3.934 5 N -0.696 5.696 6 C 0.079 3.921 7 C 0.017 3.983 8 H 0.121 0.879 9 C 0.250 3.750 10 N -0.506 5.506 11 C 0.038 3.962 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.285 1.285 20 C 0.110 3.890 21 N -0.451 5.451 22 C -0.049 4.049 23 C -0.064 4.064 24 N -0.542 5.542 25 C 0.174 3.826 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.333 0.667 32 H 0.109 0.891 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.001 0.999 36 H 0.264 0.736 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.199 0.801 40 H 0.176 0.824 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -0.804 21.820 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.064 4.064 5 N -0.328 5.328 6 C -0.051 4.051 7 C -0.005 4.005 8 H 0.139 0.861 9 C -0.066 4.066 10 N -0.184 5.184 11 C -0.001 4.001 12 C -0.577 4.577 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.773 3.227 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.211 1.211 20 C -0.012 4.012 21 N -0.132 5.132 22 C -0.182 4.182 23 C -0.211 4.211 24 N -0.262 5.262 25 C -0.109 4.109 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.216 0.784 40 H 0.193 0.807 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.222 -0.473 22.074 22.113 hybrid contribution 0.000 -0.251 -1.862 1.878 sum 1.222 -0.723 20.212 20.262 Atomic orbital electron populations 1.21908 0.95403 1.02314 1.01492 1.21382 0.95993 1.00728 0.93278 0.90625 1.21965 1.01971 0.94571 0.87872 1.60558 1.19550 1.50715 1.01942 1.21925 1.02419 0.94214 0.86534 1.19264 0.79918 1.03935 0.97346 0.86109 1.29765 0.95602 0.90914 0.90303 1.81083 1.14505 1.11263 1.11513 1.18991 0.96712 0.94794 0.89569 1.21591 1.34148 1.08325 0.93599 0.92961 1.25691 0.95058 0.96336 1.01661 1.70023 1.37906 1.24469 1.23849 0.85667 0.78210 0.79107 0.79725 1.19528 1.19784 1.21138 1.22114 1.03251 0.95221 0.80599 1.45684 1.16122 1.28625 1.22800 1.23177 1.01394 0.95696 0.97970 1.22636 0.92841 1.04213 1.01385 1.70238 1.23407 1.09661 1.22855 1.25338 0.91892 1.02408 0.91212 0.91470 0.92907 0.93520 0.88745 0.93961 0.84839 0.87271 0.94690 0.94323 0.98047 0.92702 0.86656 0.86955 0.78430 0.80675 0.76349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.66 71.98 0.62 -1.68 16 2 C -0.09 -1.17 2.80 -10.79 -0.03 -1.20 16 3 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 4 C 0.07 0.91 5.14 86.30 0.44 1.35 16 5 N -0.70 -14.64 6.49 -513.90 -3.34 -17.98 16 6 C 0.08 1.97 5.12 86.30 0.44 2.41 16 7 C 0.02 0.58 2.42 -12.60 -0.03 0.55 16 8 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 9 C 0.25 9.61 12.98 89.43 1.16 10.77 16 10 N -0.51 -21.26 18.54 20.02 0.37 -20.89 16 11 C 0.04 1.69 4.42 29.85 0.13 1.82 16 12 C -0.54 -28.00 8.60 25.60 0.22 -27.78 16 13 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 14 C 0.01 0.62 5.46 84.65 0.46 1.08 16 15 N -0.92 -52.02 13.29 21.45 0.28 -51.74 16 16 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 C 0.11 0.92 5.58 86.38 0.48 1.40 16 21 N -0.45 -6.19 2.57 -529.05 -1.36 -7.55 16 22 C -0.05 -0.72 11.58 83.09 0.96 0.24 16 23 C -0.06 -1.24 11.87 83.52 0.99 -0.25 16 24 N -0.54 -12.61 11.25 -200.31 -2.25 -14.87 16 25 C 0.17 3.00 10.85 180.26 1.96 4.95 16 26 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.87 6.49 -2.39 -0.02 0.85 16 28 H 0.05 0.88 6.68 -2.39 -0.02 0.86 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.33 7.80 6.06 -89.70 -0.54 7.26 16 32 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 36 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.73 347.36 4.01 -63.72 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.47 Total: 10.66 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 7.81 Total: -6.32 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -6.30 Total: -113.02 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.73 4.01 -63.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335943005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.604 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds