Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46902 * 109.46626 * 299.99665 * 4 2 1 6 6 C 1.46905 * 110.99410 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46844 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46965 * 305.00261 * 7 6 5 9 9 C 1.47201 * 109.47129 * 65.00137 * 7 6 5 10 10 N 5.62774 * 62.04329 * 91.48400 * 2 1 3 11 11 C 1.53003 * 109.47370 * 185.00046 * 7 6 5 12 12 C 1.50695 * 109.47441 * 175.00154 * 11 7 6 13 13 H 1.08005 * 119.99571 * 359.97438 * 12 11 7 14 14 C 1.37873 * 120.00088 * 180.02562 * 12 11 7 15 15 N 1.31516 * 120.00043 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47491 * 89.99420 * 16 14 12 18 18 H 1.48501 * 109.46947 * 209.99606 * 16 14 12 19 19 H 1.48498 * 109.46908 * 329.99201 * 16 14 12 20 20 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 21 21 C 1.34957 * 126.03434 * 44.71870 * 20 2 1 22 22 C 1.35319 * 107.74200 * 179.83754 * 21 20 2 23 23 C 1.39870 * 107.92496 * 0.42346 * 22 21 20 24 24 N 1.30844 * 108.19984 * 359.73693 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.00898 * 110.99915 * 56.05185 * 5 4 2 34 34 H 1.09002 * 109.47289 * 300.00021 * 6 5 4 35 35 H 1.09001 * 109.47046 * 60.00288 * 6 5 4 36 36 H 1.09000 * 109.46714 * 295.00043 * 11 7 6 37 37 H 1.09003 * 109.46850 * 54.99646 * 11 7 6 38 38 H 0.97002 * 119.99871 * 180.02562 * 15 14 12 39 39 H 1.07991 * 126.12754 * 359.97438 * 21 20 2 40 40 H 1.08006 * 126.03734 * 180.15787 * 22 21 20 41 41 H 1.07994 * 125.89866 * 179.71634 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5503 -0.0288 2.4487 6 6 2.0219 -0.6947 3.6703 7 6 1.4923 0.0532 4.8955 8 1 1.7808 1.1025 4.8334 9 6 0.0246 -0.0506 4.9372 10 7 -1.1083 -0.1287 4.9693 11 6 2.0834 -0.5640 6.1646 12 6 1.6602 0.2473 7.3620 13 1 1.0327 1.1165 7.2308 14 6 2.0749 -0.1194 8.6247 15 7 2.8395 -1.1776 8.7843 16 14 1.5497 0.8859 10.1090 17 1 0.2721 0.3498 10.6430 18 1 2.5977 0.8044 11.1579 19 1 1.3621 2.3027 9.7059 20 7 2.0183 -0.6906 -1.1961 21 6 1.5518 -0.5292 -2.4522 22 6 2.2671 -1.3407 -3.2652 23 6 3.1961 -2.0286 -2.4777 24 7 3.0479 -1.6397 -1.2373 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.5438 0.0412 2.4402 34 1 1.6588 -1.7223 3.6873 35 1 3.1118 -0.6941 3.6868 36 1 1.7229 -1.5869 6.2731 37 1 3.1712 -0.5677 6.0942 38 1 3.1309 -1.4358 9.6728 39 1 0.7526 0.1312 -2.7546 40 1 2.1399 -1.4427 -4.3329 41 1 3.9118 -2.7554 -2.8323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336848291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 93.085503 kcal Electronic energy + Delta-G solvation = -20767.606130 eV Core-core repulsion = 17684.035692 eV Total energy + Delta-G solvation = -3083.570438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.41015 -38.19997 -36.66155 -34.53843 -33.35119 -31.50975 -30.28962 -29.82542 -27.67893 -27.15541 -25.17721 -23.02051 -22.16345 -21.78964 -20.89712 -19.38240 -17.40397 -16.74287 -16.51646 -15.88615 -15.25677 -14.88775 -14.75345 -14.39445 -13.96484 -13.70260 -13.61950 -13.14405 -13.05441 -12.82116 -12.67259 -12.36743 -12.31608 -12.14298 -12.02100 -11.77249 -11.43166 -11.29759 -11.20400 -11.04391 -10.76688 -10.65589 -10.54542 -10.29224 -9.59074 -9.53319 -9.25818 -8.73968 -8.48611 -8.45343 -6.11206 -4.14661 1.79537 2.30158 2.73237 3.28535 3.35265 3.38257 3.50371 3.55817 3.93401 4.36322 4.41424 4.55141 4.63696 4.65458 4.75307 4.84138 5.17304 5.26360 5.26799 5.37713 5.40731 5.50144 5.56978 5.58721 5.65327 5.66685 5.75699 5.86234 5.91460 6.04577 6.11215 6.28478 6.49643 6.53322 6.88885 6.96566 7.28948 7.41730 7.50319 7.61215 7.83440 8.20690 8.33825 8.89835 9.50944 10.99653 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.003112 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.920729 B = 8995.225827 C = 9357.667148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 C -0.148 4.148 4 C 0.069 3.931 5 N -0.688 5.688 6 C 0.069 3.931 7 C 0.007 3.993 8 H 0.112 0.888 9 C 0.241 3.759 10 N -0.476 5.476 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.358 5.358 21 C 0.055 3.945 22 C -0.280 4.280 23 C 0.038 3.962 24 N -0.292 5.292 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.337 0.663 34 H 0.037 0.963 35 H 0.094 0.906 36 H 0.024 0.976 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 1.944 -22.808 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.102 3.898 3 C -0.206 4.206 4 C -0.060 4.060 5 N -0.321 5.321 6 C -0.061 4.061 7 C -0.015 4.015 8 H 0.130 0.870 9 C -0.076 4.076 10 N -0.153 5.153 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.197 1.197 20 N -0.141 5.141 21 C -0.092 4.092 22 C -0.310 4.310 23 C -0.148 4.148 24 N -0.113 5.113 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.185 0.815 40 H 0.161 0.839 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.745 2.130 -21.287 21.406 hybrid contribution -0.728 -0.240 -0.012 0.766 sum -1.472 1.890 -21.298 21.433 Atomic orbital electron populations 1.22294 0.92806 1.03285 1.03866 1.20705 0.93995 0.92618 0.82531 1.22146 1.02269 0.93009 1.03210 1.21899 1.01879 0.94747 0.87515 1.60621 1.16264 1.53786 1.01399 1.22085 1.01566 0.95387 0.87050 1.19343 0.81213 1.03377 0.97563 0.87007 1.29349 0.95257 0.91858 0.91143 1.81041 1.13413 1.10226 1.10657 1.19167 0.96919 0.96377 0.88178 1.21132 1.31769 1.12234 0.91380 0.92497 1.24957 0.94850 0.95101 0.99077 1.69939 1.34966 1.25044 1.23011 0.86588 0.78319 0.80683 0.82464 1.20696 1.21066 1.19712 1.49016 1.26886 1.31848 1.06356 1.22424 1.00463 1.01251 0.85031 1.21478 1.03185 1.05480 1.00810 1.23873 0.99861 1.00407 0.90659 1.77375 1.06588 1.06431 1.20887 0.91453 0.89465 0.91740 0.88773 0.91719 0.92755 0.94346 0.89058 0.84424 0.94481 0.88736 0.95740 0.94120 0.92765 0.81461 0.83855 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 7.96 37.16 0.30 -1.14 16 2 C 0.18 1.87 1.06 -131.82 -0.14 1.73 16 3 C -0.15 -1.39 8.57 37.15 0.32 -1.07 16 4 C 0.07 0.82 4.26 -3.82 -0.02 0.81 16 5 N -0.69 -8.55 5.71 -113.77 -0.65 -9.20 16 6 C 0.07 1.00 5.12 -3.82 -0.02 0.98 16 7 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 8 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 9 C 0.24 4.71 12.98 -20.76 -0.27 4.44 16 10 N -0.48 -10.05 18.54 42.16 0.78 -9.27 16 11 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 12 C -0.53 -13.91 8.60 -34.44 -0.30 -14.20 16 13 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 N -0.36 -3.95 3.43 -48.65 -0.17 -4.12 16 21 C 0.06 0.51 10.60 -17.22 -0.18 0.32 16 22 C -0.28 -2.54 10.80 -40.01 -0.43 -2.97 16 23 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 24 N -0.29 -3.69 11.66 30.62 0.36 -3.33 16 25 H 0.07 0.47 7.36 -51.93 -0.38 0.09 16 26 H 0.09 0.76 6.57 -51.93 -0.34 0.42 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.89 7.60 -51.93 -0.39 0.49 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 33 H 0.34 4.20 5.85 -39.29 -0.23 3.97 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.17 1.04 7.54 -52.49 -0.40 0.64 16 40 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -30.70 346.03 -6.49 -37.19 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.35 Total: 0.85 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.40 Total: -8.80 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 1.06 Total: -50.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.70 -6.49 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336848291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.273 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds