Wall clock time and date at job start Mon Mar 30 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46902 * 109.46626 * 299.99665 * 4 2 1 6 6 C 1.46905 * 110.99410 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46844 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46965 * 305.00261 * 7 6 5 9 9 C 1.47201 * 109.47129 * 65.00137 * 7 6 5 10 10 N 5.62774 * 62.04329 * 91.48400 * 2 1 3 11 11 C 1.53003 * 109.47370 * 185.00046 * 7 6 5 12 12 C 1.50695 * 109.47441 * 175.00154 * 11 7 6 13 13 H 1.08005 * 119.99571 * 359.97438 * 12 11 7 14 14 C 1.37873 * 120.00088 * 180.02562 * 12 11 7 15 15 N 1.31516 * 120.00043 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47491 * 89.99420 * 16 14 12 18 18 H 1.48501 * 109.46947 * 209.99606 * 16 14 12 19 19 H 1.48498 * 109.46908 * 329.99201 * 16 14 12 20 20 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 21 21 C 1.34957 * 126.03434 * 44.71870 * 20 2 1 22 22 C 1.35319 * 107.74200 * 179.83754 * 21 20 2 23 23 C 1.39870 * 107.92496 * 0.42346 * 22 21 20 24 24 N 1.30844 * 108.19984 * 359.73693 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.00898 * 110.99915 * 56.05185 * 5 4 2 34 34 H 1.09002 * 109.47289 * 300.00021 * 6 5 4 35 35 H 1.09001 * 109.47046 * 60.00288 * 6 5 4 36 36 H 1.09000 * 109.46714 * 295.00043 * 11 7 6 37 37 H 1.09003 * 109.46850 * 54.99646 * 11 7 6 38 38 H 0.97002 * 119.99871 * 180.02562 * 15 14 12 39 39 H 1.07991 * 126.12754 * 359.97438 * 21 20 2 40 40 H 1.08006 * 126.03734 * 180.15787 * 22 21 20 41 41 H 1.07994 * 125.89866 * 179.71634 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5503 -0.0288 2.4487 6 6 2.0219 -0.6947 3.6703 7 6 1.4923 0.0532 4.8955 8 1 1.7808 1.1025 4.8334 9 6 0.0246 -0.0506 4.9372 10 7 -1.1083 -0.1287 4.9693 11 6 2.0834 -0.5640 6.1646 12 6 1.6602 0.2473 7.3620 13 1 1.0327 1.1165 7.2308 14 6 2.0749 -0.1194 8.6247 15 7 2.8395 -1.1776 8.7843 16 14 1.5497 0.8859 10.1090 17 1 0.2721 0.3498 10.6430 18 1 2.5977 0.8044 11.1579 19 1 1.3621 2.3027 9.7059 20 7 2.0183 -0.6906 -1.1961 21 6 1.5518 -0.5292 -2.4522 22 6 2.2671 -1.3407 -3.2652 23 6 3.1961 -2.0286 -2.4777 24 7 3.0479 -1.6397 -1.2373 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.5438 0.0412 2.4402 34 1 1.6588 -1.7223 3.6873 35 1 3.1118 -0.6941 3.6868 36 1 1.7229 -1.5869 6.2731 37 1 3.1712 -0.5677 6.0942 38 1 3.1309 -1.4358 9.6728 39 1 0.7526 0.1312 -2.7546 40 1 2.1399 -1.4427 -4.3329 41 1 3.9118 -2.7554 -2.8323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336848291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:20 Heat of formation + Delta-G solvation = 74.551307 kcal Electronic energy + Delta-G solvation = -20768.409833 eV Core-core repulsion = 17684.035692 eV Total energy + Delta-G solvation = -3084.374141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14829 -39.32074 -37.95669 -35.95510 -35.06384 -33.06971 -31.13389 -30.58612 -28.69727 -28.38613 -26.45565 -24.30636 -23.58937 -22.99846 -21.62776 -20.16728 -18.66423 -18.30324 -17.92663 -17.00089 -16.63127 -16.09684 -15.66747 -15.53444 -15.03787 -14.83370 -14.68454 -14.35593 -14.17860 -14.10327 -13.93765 -13.57203 -13.46649 -13.14965 -13.12199 -13.03124 -12.87559 -12.66450 -12.46912 -12.35945 -12.26803 -12.06419 -11.93465 -11.45170 -11.39009 -11.15404 -10.56333 -10.31698 -9.55226 -9.45684 -8.19979 -6.28507 1.07559 1.40172 1.42059 1.51456 1.56925 1.91933 1.94058 2.02868 2.41015 2.95413 3.14993 3.22471 3.50820 3.73936 3.85250 4.04272 4.10885 4.17854 4.34965 4.47999 4.53118 4.59881 4.64135 4.73141 4.79424 4.88248 4.90469 4.93243 4.94547 4.97211 5.15397 5.21356 5.31123 5.46595 5.59810 5.74535 5.79223 5.88619 6.17871 6.19241 6.27606 6.73027 6.86624 6.86886 7.40295 8.91051 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.003112 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.920729 B = 8995.225827 C = 9357.667148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.186 3.814 3 C -0.142 4.142 4 C 0.077 3.923 5 N -0.677 5.677 6 C 0.079 3.921 7 C 0.021 3.979 8 H 0.129 0.871 9 C 0.250 3.750 10 N -0.500 5.500 11 C 0.037 3.963 12 C -0.538 4.538 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.949 3.051 17 H -0.284 1.284 18 H -0.280 1.280 19 H -0.262 1.262 20 N -0.368 5.368 21 C 0.053 3.947 22 C -0.286 4.286 23 C 0.030 3.970 24 N -0.339 5.339 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.339 0.661 34 H 0.031 0.969 35 H 0.103 0.897 36 H -0.001 1.001 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.199 0.801 40 H 0.167 0.833 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 3.281 -24.278 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.103 3.897 3 C -0.200 4.200 4 C -0.053 4.053 5 N -0.310 5.310 6 C -0.051 4.051 7 C 0.000 4.000 8 H 0.146 0.854 9 C -0.066 4.066 10 N -0.178 5.178 11 C -0.002 4.002 12 C -0.576 4.576 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.775 3.225 17 H -0.210 1.210 18 H -0.205 1.205 19 H -0.186 1.186 20 N -0.151 5.151 21 C -0.093 4.093 22 C -0.315 4.315 23 C -0.155 4.155 24 N -0.160 5.160 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.049 0.951 35 H 0.122 0.878 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.216 0.784 40 H 0.184 0.816 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.369 3.478 -22.775 23.079 hybrid contribution -0.525 -0.690 0.381 0.947 sum -1.894 2.787 -22.393 22.646 Atomic orbital electron populations 1.22279 0.91546 1.02985 1.05057 1.20698 0.94847 0.92607 0.81586 1.22094 1.01286 0.92550 1.04086 1.21783 1.01080 0.94228 0.88186 1.60568 1.16390 1.53206 1.00809 1.21912 1.01931 0.94620 0.86671 1.19195 0.79947 1.04232 0.96669 0.85373 1.29612 0.95490 0.91066 0.90426 1.81044 1.14213 1.11133 1.11381 1.18991 0.96678 0.94856 0.89651 1.21556 1.31106 1.12302 0.92631 0.92491 1.25741 0.95119 0.96145 1.01925 1.70041 1.36293 1.26539 1.23605 0.85678 0.77709 0.79700 0.79416 1.21004 1.20499 1.18646 1.49079 1.26991 1.31992 1.07082 1.23010 1.00798 1.01321 0.84210 1.21838 1.02658 1.05046 1.01966 1.24373 1.00299 1.00522 0.90327 1.77323 1.08218 1.08074 1.22416 0.89101 0.89433 0.92757 0.88764 0.93169 0.90973 0.95819 0.90261 0.84156 0.95097 0.87831 0.98289 0.94646 0.92737 0.78427 0.81557 0.78326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 7.96 71.98 0.57 -1.92 16 2 C 0.19 3.53 1.06 3.60 0.00 3.53 16 3 C -0.14 -2.42 8.57 71.98 0.62 -1.80 16 4 C 0.08 1.80 4.26 86.31 0.37 2.17 16 5 N -0.68 -16.18 5.71 -513.86 -2.93 -19.11 16 6 C 0.08 2.24 5.12 86.30 0.44 2.68 16 7 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 8 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 9 C 0.25 9.60 12.98 89.44 1.16 10.76 16 10 N -0.50 -20.74 18.54 20.01 0.37 -20.37 16 11 C 0.04 1.70 4.42 29.85 0.13 1.83 16 12 C -0.54 -28.26 8.60 25.60 0.22 -28.04 16 13 H 0.06 2.93 7.59 -2.91 -0.02 2.91 16 14 C 0.01 0.52 5.46 84.65 0.46 0.98 16 15 N -0.92 -53.35 13.29 21.45 0.28 -53.06 16 16 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 N -0.37 -7.67 3.43 -307.85 -1.06 -8.72 16 21 C 0.05 0.85 10.60 83.54 0.89 1.73 16 22 C -0.29 -4.59 10.80 21.99 0.24 -4.35 16 23 C 0.03 0.59 12.03 85.24 1.03 1.61 16 24 N -0.34 -8.45 11.66 -57.02 -0.66 -9.11 16 25 H 0.09 0.98 7.36 -2.39 -0.02 0.96 16 26 H 0.09 1.36 6.57 -2.39 -0.02 1.35 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 1.60 7.60 -2.39 -0.02 1.58 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 33 H 0.34 8.04 5.85 -89.70 -0.52 7.51 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.20 1.73 7.54 -2.91 -0.02 1.71 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -65.56 346.03 4.61 -60.95 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.49 Total: 14.24 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.10 Total: -10.10 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.00 Total: -110.38 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.56 4.61 -60.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336848291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.498 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds