Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.62586 * 2 1 4 4 C 1.53231 * 109.63214 * 120.38725 * 2 1 3 5 5 N 1.46907 * 109.34024 * 65.87865 * 4 2 1 6 6 C 1.46902 * 111.00003 * 187.25402 * 5 4 2 7 7 C 1.50696 * 109.47105 * 170.00153 * 6 5 4 8 8 C 1.38597 * 120.80104 * 89.99714 * 7 6 5 9 9 N 1.32333 * 119.10371 * 179.97438 * 8 7 6 10 10 C 1.31792 * 120.82206 * 0.02562 * 9 8 7 11 11 N 1.31801 * 121.75037 * 0.28221 * 10 9 8 12 12 C 1.32329 * 120.81938 * 359.43123 * 11 10 9 13 13 C 1.46903 * 111.26571 * 63.10646 * 5 4 2 14 14 C 1.53234 * 109.33781 * 296.89369 * 13 5 4 15 15 H 1.08995 * 109.79388 * 294.02561 * 14 13 5 16 16 C 1.53002 * 109.62773 * 173.54286 * 14 13 5 17 17 N 1.47079 * 108.52375 * 53.83424 * 14 13 5 18 18 C 1.36940 * 120.88104 * 128.83141 * 17 14 13 19 19 H 1.07996 * 120.00366 * 331.97099 * 18 17 14 20 20 C 1.38812 * 119.99465 * 151.97168 * 18 17 14 21 21 N 1.31618 * 120.00582 * 342.70376 * 20 18 17 22 22 Si 1.86800 * 119.99763 * 162.70281 * 20 18 17 23 23 H 1.48500 * 109.47122 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47312 * 119.99982 * 22 20 18 25 25 H 1.48506 * 109.46929 * 240.00045 * 22 20 18 26 26 H 1.09005 * 109.46566 * 299.61171 * 1 2 3 27 27 H 1.08997 * 109.47451 * 59.61034 * 1 2 3 28 28 H 1.09005 * 109.47033 * 179.61722 * 1 2 3 29 29 H 1.09001 * 109.49508 * 305.92177 * 4 2 1 30 30 H 1.09002 * 109.49493 * 185.83712 * 4 2 1 31 31 H 1.08993 * 109.47310 * 49.99816 * 6 5 4 32 32 H 1.09003 * 109.47169 * 290.00086 * 6 5 4 33 33 H 1.08000 * 120.44666 * 359.96148 * 8 7 6 34 34 H 1.07996 * 119.12866 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.45300 * 180.25805 * 12 11 10 36 36 H 1.09002 * 109.49186 * 56.85746 * 13 5 4 37 37 H 1.09002 * 109.48808 * 176.93624 * 13 5 4 38 38 H 1.09007 * 109.47155 * 296.78400 * 16 14 13 39 39 H 1.09006 * 109.46957 * 56.78268 * 16 14 13 40 40 H 1.09000 * 109.47629 * 176.78344 * 16 14 13 41 41 H 0.96995 * 120.00068 * 175.12191 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 1.2450 5 7 1.6747 -2.1495 1.1645 6 6 1.9980 -2.8495 2.4149 7 6 1.3885 -4.2275 2.3911 8 6 2.0938 -5.3068 1.8824 9 7 1.5264 -6.5023 1.8783 10 6 0.3074 -6.6728 2.3493 11 7 -0.3952 -5.6690 2.8350 12 6 0.1090 -4.4462 2.8768 13 6 2.3148 -2.8026 0.0148 14 6 1.8110 -2.1574 -1.2806 15 1 0.7484 -2.3647 -1.4071 16 6 2.5896 -2.7199 -2.4715 17 7 2.0240 -0.7048 -1.1927 18 6 2.6650 -0.0265 -2.1949 19 1 3.3948 -0.5331 -2.8089 20 6 2.3766 1.3122 -2.4215 21 7 1.2766 1.8411 -1.9288 22 14 3.5496 2.3633 -3.4257 23 1 4.7043 1.5377 -3.8619 24 1 2.8415 2.8942 -4.6182 25 1 4.0361 3.4940 -2.5948 26 1 -0.3632 0.5078 0.8935 27 1 -0.3634 0.5198 -0.8864 28 1 -0.3633 -1.0277 -0.0069 29 1 1.5993 -0.2880 2.1361 30 1 3.1298 -0.6395 1.2971 31 1 1.5965 -2.2892 3.2592 32 1 3.0802 -2.9325 2.5155 33 1 3.0929 -5.1738 1.4944 34 1 -0.1294 -7.6603 2.3322 35 1 -0.4704 -3.6287 3.2800 36 1 3.3960 -2.6831 0.0842 37 1 2.0650 -3.8636 0.0139 38 1 3.6422 -2.4529 -2.3763 39 1 2.4904 -3.8053 -2.4905 40 1 2.1911 -2.3024 -3.3961 41 1 1.1096 2.7916 -2.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338287740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = 83.611448 kcal Electronic energy + Delta-G solvation = -22307.655484 eV Core-core repulsion = 19223.674220 eV Total energy + Delta-G solvation = -3083.981264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05626 -38.58353 -35.31994 -33.71380 -32.59233 -32.55241 -30.81870 -28.00220 -26.75821 -26.07277 -24.59270 -24.20001 -23.11195 -21.36442 -20.72542 -18.63110 -17.64838 -17.51022 -16.34089 -15.56751 -15.10378 -14.71278 -14.46390 -14.29982 -13.92555 -13.71458 -13.55338 -13.34818 -13.15591 -12.71509 -12.22996 -11.85186 -11.62673 -11.30877 -10.99975 -10.93056 -10.86285 -10.81367 -10.60722 -10.51196 -10.44657 -10.05167 -9.94705 -9.57681 -9.47021 -9.24680 -9.17894 -8.46819 -7.88232 -6.64805 -5.74662 -3.20441 0.85911 1.05551 3.36535 3.45802 3.46705 3.71033 4.10777 4.19248 4.39010 4.50814 4.60243 4.75083 4.85548 5.26296 5.34901 5.39168 5.50990 5.61230 5.75082 5.84830 5.91021 6.04492 6.07470 6.18028 6.28696 6.29940 6.35272 6.39187 6.58658 6.80893 6.90889 6.94240 7.00792 7.06934 7.21424 7.44487 7.48222 7.70728 7.81775 7.96024 8.03023 8.45068 9.23971 9.85650 10.44262 11.30274 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032302 B = 0.004810 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.620403 B = 5819.748760 C = 6193.453155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.199 3.801 3 H 0.092 0.908 4 C 0.042 3.958 5 N -0.524 5.524 6 C 0.096 3.904 7 C -0.169 4.169 8 C 0.150 3.850 9 N -0.522 5.522 10 C 0.282 3.718 11 N -0.522 5.522 12 C 0.164 3.836 13 C 0.046 3.954 14 C 0.173 3.827 15 H 0.031 0.969 16 C -0.137 4.137 17 N -0.584 5.584 18 C -0.248 4.248 19 H 0.070 0.930 20 C 0.003 3.997 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.020 0.980 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.163 0.837 34 H 0.192 0.808 35 H 0.168 0.832 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -10.616 9.405 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.092 3.908 3 H 0.110 0.890 4 C -0.086 4.086 5 N -0.249 5.249 6 C -0.033 4.033 7 C -0.173 4.173 8 C -0.016 4.016 9 N -0.235 5.235 10 C -0.006 4.006 11 N -0.235 5.235 12 C -0.002 4.002 13 C -0.083 4.083 14 C 0.066 3.934 15 H 0.049 0.951 16 C -0.196 4.196 17 N -0.307 5.307 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.540 5.540 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 H 0.039 0.961 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.180 0.820 34 H 0.209 0.791 35 H 0.185 0.815 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.253 -11.392 9.215 14.655 hybrid contribution 1.767 1.510 -0.350 2.351 sum 1.514 -9.882 8.865 13.362 Atomic orbital electron populations 1.21975 0.97836 0.99211 1.00535 1.20357 0.92707 0.95560 0.82146 0.89010 1.22897 0.97719 0.86860 1.01157 1.61997 1.59048 1.02907 1.00918 1.20932 0.97586 0.89897 0.94846 1.21644 0.97215 0.97911 1.00536 1.23146 0.99648 0.87345 0.91429 1.68406 1.12875 1.25354 1.16871 1.24895 0.87065 0.98520 0.90152 1.68429 1.37538 1.00726 1.16827 1.23128 0.91569 0.94106 0.91366 1.22745 0.96027 0.97117 0.92421 1.20432 0.96396 0.85932 0.90673 0.95113 1.21802 1.00712 0.97811 0.99227 1.44271 1.66973 1.00993 1.18447 1.19241 1.14652 0.93560 1.10279 0.91206 1.24986 0.96134 0.99045 0.99362 1.70066 1.22615 1.11453 1.49857 0.86357 0.80784 0.80679 0.79729 1.20453 1.21863 1.21753 0.96088 0.90630 0.94864 0.91942 0.95561 0.89710 0.93977 0.82025 0.79118 0.81520 0.95182 0.92463 0.92715 0.94350 0.91965 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.98 37.16 0.33 -2.67 16 2 C 0.20 4.44 2.34 -67.49 -0.16 4.28 16 3 H 0.09 2.33 6.25 -51.93 -0.32 2.01 16 4 C 0.04 0.76 5.01 -3.70 -0.02 0.75 16 5 N -0.52 -8.52 4.12 -235.76 -0.97 -9.49 16 6 C 0.10 1.21 5.16 -4.98 -0.03 1.18 16 7 C -0.17 -2.07 4.90 -104.36 -0.51 -2.58 16 8 C 0.15 1.85 9.21 -17.20 -0.16 1.69 16 9 N -0.52 -6.72 10.44 -14.58 -0.15 -6.88 16 10 C 0.28 3.35 12.29 -92.15 -1.13 2.22 16 11 N -0.52 -6.74 10.44 -14.58 -0.15 -6.89 16 12 C 0.16 2.02 11.01 -17.20 -0.19 1.83 16 13 C 0.05 0.79 4.66 -3.70 -0.02 0.78 16 14 C 0.17 3.53 3.25 -67.49 -0.22 3.31 16 15 H 0.03 0.69 7.61 -51.93 -0.40 0.30 16 16 C -0.14 -2.56 7.95 37.16 0.30 -2.27 16 17 N -0.58 -13.77 2.72 -157.01 -0.43 -14.20 16 18 C -0.25 -6.43 8.72 -15.06 -0.13 -6.56 16 19 H 0.07 1.79 6.17 -52.49 -0.32 1.47 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -24.63 9.81 55.49 0.54 -24.08 16 22 Si 0.89 21.10 29.59 -169.99 -5.03 16.07 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 1.92 6.78 -51.93 -0.35 1.57 16 28 H 0.03 0.72 7.06 -51.93 -0.37 0.35 16 29 H 0.06 1.01 7.99 -51.93 -0.41 0.60 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 32 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.16 1.74 7.96 -52.49 -0.42 1.32 16 34 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.91 5.69 -51.93 -0.30 0.61 16 38 H 0.05 1.03 7.33 -51.92 -0.38 0.65 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.24 7.78 -51.93 -0.40 0.84 16 41 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -28.75 320.48 -9.56 -38.31 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.18 Total: 0.38 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.02 Total: 1.96 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -1.16 Total: -61.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.75 -9.56 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338287740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.921 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds