Wall clock time and date at job start Mon Mar 30 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47094 * 109.98222 * 3 2 1 5 5 C 1.46898 * 111.00067 * 292.03726 * 4 3 2 6 6 C 1.52998 * 109.47344 * 160.48373 * 5 4 3 7 7 C 1.38585 * 110.99819 * 168.08692 * 4 3 2 8 8 N 1.31210 * 126.47389 * 106.33912 * 7 4 3 9 9 N 1.28526 * 109.86401 * 179.97438 * 8 7 4 10 10 C 1.30294 * 110.05090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34701 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47180 * 246.16291 * 11 10 9 13 13 C 1.53001 * 109.46774 * 126.17046 * 11 10 9 14 14 C 1.50697 * 109.47060 * 6.17068 * 11 10 9 15 15 H 1.07999 * 119.99970 * 359.71902 * 14 11 10 16 16 C 1.37882 * 119.99838 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99886 * 359.71585 * 16 14 11 18 18 Si 1.86794 * 119.99992 * 179.72128 * 16 14 11 19 19 H 1.48502 * 109.47342 * 59.99638 * 18 16 14 20 20 H 1.48502 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46961 * 299.99729 * 18 16 14 22 22 N 1.36455 * 126.47282 * 286.64717 * 7 4 3 23 23 C 1.46503 * 127.13608 * 359.97438 * 22 7 4 24 24 H 4.40886 * 5.52170 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47071 * 349.97518 * 3 2 1 26 26 H 1.08999 * 109.46749 * 229.97932 * 3 2 1 27 27 H 1.09001 * 109.47302 * 280.48567 * 5 4 3 28 28 H 1.09002 * 109.46765 * 40.48226 * 5 4 3 29 29 H 1.08996 * 109.47245 * 185.09150 * 6 5 4 30 30 H 1.09004 * 109.47143 * 305.09512 * 6 5 4 31 31 H 1.09002 * 109.46709 * 65.09021 * 6 5 4 32 32 H 1.08997 * 109.47457 * 185.06394 * 12 11 10 33 33 H 1.09000 * 109.47531 * 305.07091 * 12 11 10 34 34 H 1.09009 * 109.46715 * 65.06683 * 12 11 10 35 35 H 1.09005 * 109.46848 * 299.99437 * 13 11 10 36 36 H 1.08996 * 109.47592 * 59.99690 * 13 11 10 37 37 H 1.09003 * 109.47139 * 180.02562 * 13 11 10 38 38 H 0.96993 * 120.00022 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.47540 * 270.79868 * 23 22 7 40 40 H 1.09003 * 109.46959 * 30.79975 * 23 22 7 41 41 H 1.08997 * 109.46825 * 150.79608 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.4742 -1.3016 5 6 2.8262 -0.4924 -2.3637 6 6 2.8927 0.2054 -3.7236 7 6 4.4944 0.7416 -1.2538 8 7 5.4509 0.0178 -1.7855 9 7 6.5919 0.5602 -1.5490 10 6 6.4322 1.6534 -0.8583 11 6 7.5242 2.5761 -0.3814 12 6 7.5908 2.5404 1.1467 13 6 7.2249 4.0030 -0.8455 14 6 8.8450 2.1287 -0.9526 15 1 8.8900 1.2602 -1.5929 16 6 9.9969 2.8245 -0.6526 17 7 9.9422 3.8819 0.1275 18 14 11.6353 2.2654 -1.3543 19 1 11.5744 2.2948 -2.8378 20 1 12.7111 3.1754 -0.8854 21 1 11.9228 0.8818 -0.8980 22 7 5.0909 1.8042 -0.6397 23 6 4.4307 2.8853 0.0962 24 1 -1.0501 -0.0002 0.0001 25 1 3.0098 -1.0112 0.1789 26 1 3.0090 0.6617 0.7870 27 1 3.5512 -1.3060 -2.3369 28 1 1.8244 -0.8933 -2.2095 29 1 2.5758 -0.4872 -4.5033 30 1 2.2337 1.0737 -3.7190 31 1 3.9160 0.5270 -3.9172 32 1 8.3180 3.2734 1.4960 33 1 6.6099 2.7768 1.5589 34 1 7.8922 1.5452 1.4740 35 1 7.1774 4.0285 -1.9342 36 1 6.2696 4.3266 -0.4324 37 1 8.0149 4.6704 -0.5009 38 1 10.7526 4.3712 0.3388 39 1 4.1780 3.6918 -0.5920 40 1 3.5206 2.5056 0.5608 41 1 5.1021 3.2627 0.8674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339752731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:05 Heat of formation + Delta-G solvation = 151.229546 kcal Electronic energy + Delta-G solvation = -22148.964315 eV Core-core repulsion = 19067.915192 eV Total energy + Delta-G solvation = -3081.049123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32899 -38.07007 -35.77094 -34.15640 -33.34527 -31.36424 -30.59280 -28.58922 -27.32656 -25.88842 -25.73083 -25.08664 -23.07779 -21.81391 -20.03462 -19.19182 -18.44927 -16.98508 -16.13977 -15.87791 -15.27516 -15.05737 -14.82526 -14.61202 -13.79934 -13.74592 -13.33780 -13.13097 -12.90541 -12.37417 -11.97552 -11.93565 -11.83062 -11.38068 -11.12337 -11.03536 -10.86047 -10.77168 -10.66705 -10.60019 -10.38053 -10.16579 -10.11384 -9.94877 -9.78329 -9.50468 -9.16838 -8.70677 -8.38697 -7.75993 -6.02299 -4.07348 2.18883 2.58156 2.63860 2.96160 3.37856 3.39919 3.46953 3.67116 3.96360 4.18527 4.45515 4.88297 5.02831 5.09305 5.23627 5.27548 5.33498 5.41641 5.47989 5.58220 5.68321 5.70503 5.78418 5.94855 6.00163 6.22636 6.33338 6.47683 6.57078 6.63566 6.66092 6.74088 6.81911 7.14145 7.21165 7.37388 7.39660 7.59926 7.79136 7.82424 8.09585 8.31681 8.99081 9.53642 9.63847 11.01756 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.004852 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.513607 B = 5769.570900 C = 6256.223008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.163 3.837 4 N -0.451 5.451 5 C 0.064 3.936 6 C -0.143 4.143 7 C 0.310 3.690 8 N -0.321 5.321 9 N -0.286 5.286 10 C 0.243 3.757 11 C 0.145 3.855 12 C -0.129 4.129 13 C -0.135 4.135 14 C -0.492 4.492 15 H 0.076 0.924 16 C 0.063 3.937 17 N -0.895 5.895 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.276 1.276 22 N -0.481 5.481 23 C 0.079 3.921 24 H 0.219 0.781 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.008 0.992 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.012 0.988 37 H 0.098 0.902 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.203 -2.665 1.371 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.037 3.963 4 N -0.175 5.175 5 C -0.062 4.062 6 C -0.201 4.201 7 C -0.046 4.046 8 N -0.165 5.165 9 N -0.123 5.123 10 C -0.024 4.024 11 C 0.142 3.858 12 C -0.188 4.188 13 C -0.193 4.193 14 C -0.531 4.531 15 H 0.095 0.905 16 C -0.137 4.137 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.202 1.202 22 N -0.176 5.176 23 C -0.065 4.065 24 H 0.236 0.764 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.632 -3.227 0.575 15.972 hybrid contribution 0.192 0.211 0.534 0.605 sum -15.440 -3.016 1.109 15.771 Atomic orbital electron populations 1.24859 0.95741 1.01085 0.99158 1.22580 0.93744 1.00295 1.01161 1.19067 0.85364 1.00847 0.90999 1.58683 1.07488 1.46091 1.05284 1.22082 1.00982 0.93148 0.90012 1.21691 1.02891 1.00514 0.94981 1.22151 0.90561 0.89806 1.02087 1.74493 0.95009 1.23873 1.23156 1.74098 1.14854 1.07336 1.16030 1.26180 0.82012 0.97342 0.96893 1.16935 0.87787 0.88221 0.92808 1.21919 0.98627 1.02151 0.96078 1.21965 0.99461 0.98845 0.99066 1.21030 0.89361 1.13137 1.29562 0.90536 1.24864 0.99056 0.94813 0.94990 1.69774 1.28378 1.18494 1.36833 0.86495 0.82572 0.78511 0.79528 1.20206 1.21483 1.20160 1.46177 1.08046 1.20376 1.42954 1.22139 0.98167 0.88998 0.97148 0.76398 0.91028 0.88490 0.91607 0.90395 0.92029 0.92458 0.91999 0.88624 0.97280 0.94642 0.95060 0.96912 0.88364 0.92893 0.90595 0.90492 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.18 -2.00 12.34 -37.12 -0.46 -2.46 16 3 C 0.16 2.05 5.23 -6.61 -0.03 2.01 16 4 N -0.45 -6.68 4.43 -177.84 -0.79 -7.46 16 5 C 0.06 0.87 5.32 -3.83 -0.02 0.85 16 6 C -0.14 -1.90 9.95 37.16 0.37 -1.53 16 7 C 0.31 5.74 6.31 -318.88 -2.01 3.73 16 8 N -0.32 -6.99 10.73 30.31 0.33 -6.66 16 9 N -0.29 -7.03 11.00 32.99 0.36 -6.67 16 10 C 0.24 5.53 6.34 -154.01 -0.98 4.55 16 11 C 0.15 3.45 0.48 -156.81 -0.08 3.38 16 12 C -0.13 -2.89 8.09 37.16 0.30 -2.59 16 13 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 14 C -0.49 -13.26 7.91 -34.44 -0.27 -13.53 16 15 H 0.08 2.19 6.95 -52.49 -0.37 1.82 16 16 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 17 N -0.90 -23.49 9.41 55.43 0.52 -22.97 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 N -0.48 -9.04 3.21 -121.46 -0.39 -9.43 16 23 C 0.08 1.13 9.35 59.85 0.56 1.69 16 24 H 0.22 1.20 7.80 -54.09 -0.42 0.78 16 25 H 0.07 0.89 8.10 -51.93 -0.42 0.46 16 26 H 0.10 1.17 6.27 -51.93 -0.33 0.85 16 27 H 0.07 0.98 7.31 -51.93 -0.38 0.60 16 28 H 0.08 0.90 6.94 -51.93 -0.36 0.54 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 32 H 0.10 2.29 6.23 -51.93 -0.32 1.97 16 33 H 0.01 0.16 5.66 -51.93 -0.29 -0.13 16 34 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.23 5.57 -51.93 -0.29 -0.06 16 37 H 0.10 2.38 6.06 -51.93 -0.31 2.06 16 38 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 40 H 0.08 0.91 6.31 -51.93 -0.33 0.58 16 41 H 0.10 1.39 4.87 -51.93 -0.25 1.14 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -29.92 327.94 -7.60 -37.51 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.71 Total: 0.73 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.84 Total: -6.24 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.03 Total: -53.19 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.92 -7.60 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339752731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.741 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds