Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47094 * 109.98222 * 3 2 1 5 5 C 1.46898 * 111.00067 * 292.03726 * 4 3 2 6 6 C 1.52998 * 109.47344 * 160.48373 * 5 4 3 7 7 C 1.38585 * 110.99819 * 168.08692 * 4 3 2 8 8 N 1.31210 * 126.47389 * 106.33912 * 7 4 3 9 9 N 1.28526 * 109.86401 * 179.97438 * 8 7 4 10 10 C 1.30294 * 110.05090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34701 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47180 * 246.16291 * 11 10 9 13 13 C 1.53001 * 109.46774 * 126.17046 * 11 10 9 14 14 C 1.50697 * 109.47060 * 6.17068 * 11 10 9 15 15 H 1.07999 * 119.99970 * 359.71902 * 14 11 10 16 16 C 1.37882 * 119.99838 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99886 * 359.71585 * 16 14 11 18 18 Si 1.86794 * 119.99992 * 179.72128 * 16 14 11 19 19 H 1.48502 * 109.47342 * 59.99638 * 18 16 14 20 20 H 1.48502 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46961 * 299.99729 * 18 16 14 22 22 N 1.36455 * 126.47282 * 286.64717 * 7 4 3 23 23 C 1.46503 * 127.13608 * 359.97438 * 22 7 4 24 24 H 4.40886 * 5.52170 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47071 * 349.97518 * 3 2 1 26 26 H 1.08999 * 109.46749 * 229.97932 * 3 2 1 27 27 H 1.09001 * 109.47302 * 280.48567 * 5 4 3 28 28 H 1.09002 * 109.46765 * 40.48226 * 5 4 3 29 29 H 1.08996 * 109.47245 * 185.09150 * 6 5 4 30 30 H 1.09004 * 109.47143 * 305.09512 * 6 5 4 31 31 H 1.09002 * 109.46709 * 65.09021 * 6 5 4 32 32 H 1.08997 * 109.47457 * 185.06394 * 12 11 10 33 33 H 1.09000 * 109.47531 * 305.07091 * 12 11 10 34 34 H 1.09009 * 109.46715 * 65.06683 * 12 11 10 35 35 H 1.09005 * 109.46848 * 299.99437 * 13 11 10 36 36 H 1.08996 * 109.47592 * 59.99690 * 13 11 10 37 37 H 1.09003 * 109.47139 * 180.02562 * 13 11 10 38 38 H 0.96993 * 120.00022 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.47540 * 270.79868 * 23 22 7 40 40 H 1.09003 * 109.46959 * 30.79975 * 23 22 7 41 41 H 1.08997 * 109.46825 * 150.79608 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.4742 -1.3016 5 6 2.8262 -0.4924 -2.3637 6 6 2.8927 0.2054 -3.7236 7 6 4.4944 0.7416 -1.2538 8 7 5.4509 0.0178 -1.7855 9 7 6.5919 0.5602 -1.5490 10 6 6.4322 1.6534 -0.8583 11 6 7.5242 2.5761 -0.3814 12 6 7.5908 2.5404 1.1467 13 6 7.2249 4.0030 -0.8455 14 6 8.8450 2.1287 -0.9526 15 1 8.8900 1.2602 -1.5929 16 6 9.9969 2.8245 -0.6526 17 7 9.9422 3.8819 0.1275 18 14 11.6353 2.2654 -1.3543 19 1 11.5744 2.2948 -2.8378 20 1 12.7111 3.1754 -0.8854 21 1 11.9228 0.8818 -0.8980 22 7 5.0909 1.8042 -0.6397 23 6 4.4307 2.8853 0.0962 24 1 -1.0501 -0.0002 0.0001 25 1 3.0098 -1.0112 0.1789 26 1 3.0090 0.6617 0.7870 27 1 3.5512 -1.3060 -2.3369 28 1 1.8244 -0.8933 -2.2095 29 1 2.5758 -0.4872 -4.5033 30 1 2.2337 1.0737 -3.7190 31 1 3.9160 0.5270 -3.9172 32 1 8.3180 3.2734 1.4960 33 1 6.6099 2.7768 1.5589 34 1 7.8922 1.5452 1.4740 35 1 7.1774 4.0285 -1.9342 36 1 6.2696 4.3266 -0.4324 37 1 8.0149 4.6704 -0.5009 38 1 10.7526 4.3712 0.3388 39 1 4.1780 3.6918 -0.5920 40 1 3.5206 2.5056 0.5608 41 1 5.1021 3.2627 0.8674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339752731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 135.354208 kcal Electronic energy + Delta-G solvation = -22149.652721 eV Core-core repulsion = 19067.915192 eV Total energy + Delta-G solvation = -3081.737530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.89256 -39.26970 -37.54318 -35.69024 -34.21643 -33.21992 -31.75399 -30.07730 -28.64029 -27.69547 -27.16727 -26.75650 -24.32437 -23.47670 -21.42349 -20.91818 -19.26215 -18.33861 -17.83847 -17.29193 -16.85459 -16.71476 -16.12958 -15.79146 -15.27463 -14.84896 -14.79832 -14.58178 -14.35086 -13.79091 -13.58237 -13.22078 -13.02495 -12.96660 -12.91909 -12.67395 -12.49202 -12.33207 -12.20389 -12.03202 -11.84286 -11.81810 -11.63666 -11.41336 -11.17291 -10.97648 -10.76485 -10.46409 -10.34760 -9.27155 -8.03798 -6.13844 0.86889 1.26143 1.46283 1.46354 1.55380 1.82670 1.87603 2.06895 2.49371 2.83780 3.22562 3.36107 3.74224 3.79822 3.92012 4.06681 4.18684 4.28022 4.32124 4.43920 4.49071 4.54315 4.60719 4.77789 4.81583 4.86891 4.94114 4.95529 5.03581 5.06363 5.16537 5.24897 5.30155 5.52522 5.58107 5.61564 5.80156 5.98706 6.08553 6.29881 6.42071 6.66125 6.88913 7.51518 7.98556 8.97624 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.004852 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.513607 B = 5769.570900 C = 6256.223008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.225 4.225 3 C 0.166 3.834 4 N -0.446 5.446 5 C 0.064 3.936 6 C -0.137 4.137 7 C 0.335 3.665 8 N -0.355 5.355 9 N -0.331 5.331 10 C 0.226 3.774 11 C 0.141 3.859 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.515 4.515 15 H 0.049 0.951 16 C 0.032 3.968 17 N -0.901 5.901 18 Si 0.946 3.054 19 H -0.281 1.281 20 H -0.277 1.277 21 H -0.281 1.281 22 N -0.478 5.478 23 C 0.070 3.930 24 H 0.255 0.745 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.194 -2.232 2.095 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.226 4.226 3 C 0.041 3.959 4 N -0.171 5.171 5 C -0.062 4.062 6 C -0.195 4.195 7 C -0.023 4.023 8 N -0.199 5.199 9 N -0.168 5.168 10 C -0.043 4.043 11 C 0.138 3.862 12 C -0.175 4.175 13 C -0.180 4.180 14 C -0.554 4.554 15 H 0.067 0.933 16 C -0.167 4.167 17 N -0.540 5.540 18 Si 0.773 3.227 19 H -0.207 1.207 20 H -0.202 1.202 21 H -0.207 1.207 22 N -0.171 5.171 23 C -0.072 4.072 24 H 0.271 0.729 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.638 -2.782 1.315 18.890 hybrid contribution 0.922 0.041 0.299 0.970 sum -17.717 -2.741 1.614 18.000 Atomic orbital electron populations 1.25728 0.96416 0.98401 0.96310 1.22428 0.93658 1.02762 1.03717 1.18987 0.86782 1.00659 0.89474 1.58905 1.04552 1.46667 1.06991 1.22167 1.01885 0.92411 0.89752 1.21655 1.00734 1.01372 0.95717 1.22499 0.91612 0.88717 0.99437 1.74394 0.95062 1.25125 1.25283 1.73981 1.16770 1.08699 1.17365 1.25810 0.83473 0.97236 0.97788 1.16855 0.86977 0.88945 0.93393 1.21732 1.00032 1.00492 0.95250 1.21783 1.00608 0.97728 0.97919 1.21139 0.91645 1.12710 1.29932 0.93263 1.25338 1.01018 0.95033 0.95350 1.69840 1.28859 1.18500 1.36783 0.85809 0.80275 0.78049 0.78602 1.20728 1.20177 1.20658 1.46262 1.06829 1.21158 1.42899 1.22473 0.99068 0.88365 0.97251 0.72857 0.91362 0.88174 0.93333 0.87605 0.89665 0.91713 0.95640 0.90263 0.93832 0.96440 0.96776 0.93410 0.90174 0.92729 0.89272 0.87447 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 19.25 74.32 1.43 -0.69 16 2 C -0.23 -4.34 12.34 31.13 0.38 -3.96 16 3 C 0.17 3.84 5.23 84.50 0.44 4.28 16 4 N -0.45 -12.49 4.43 -716.57 -3.18 -15.67 16 5 C 0.06 1.64 5.32 86.30 0.46 2.10 16 6 C -0.14 -3.48 9.95 71.98 0.72 -2.77 16 7 C 0.33 12.25 6.31 260.11 1.64 13.90 16 8 N -0.35 -15.88 10.73 -58.00 -0.62 -16.50 16 9 N -0.33 -16.90 11.00 -49.53 -0.55 -17.44 16 10 C 0.23 10.44 6.34 137.64 0.87 11.31 16 11 C 0.14 6.79 0.48 -53.67 -0.03 6.77 16 12 C -0.12 -5.20 8.09 71.98 0.58 -4.61 16 13 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 14 C -0.52 -28.69 7.91 25.60 0.20 -28.49 16 15 H 0.05 2.96 6.95 -2.91 -0.02 2.94 16 16 C 0.03 1.73 5.15 84.66 0.44 2.16 16 17 N -0.90 -47.52 9.41 21.45 0.20 -47.32 16 18 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 22 N -0.48 -17.52 3.21 -538.18 -1.73 -19.25 16 23 C 0.07 1.81 9.35 127.77 1.19 3.01 16 24 H 0.26 1.34 7.80 -4.41 -0.03 1.30 16 25 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 26 H 0.10 2.19 6.27 -2.39 -0.01 2.17 16 27 H 0.05 1.43 7.31 -2.39 -0.02 1.41 16 28 H 0.11 2.14 6.94 -2.39 -0.02 2.12 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.02 0.82 7.60 -2.39 -0.02 0.80 16 32 H 0.08 3.79 6.23 -2.39 -0.01 3.77 16 33 H 0.04 1.58 5.66 -2.39 -0.01 1.57 16 34 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.05 1.73 5.57 -2.39 -0.01 1.72 16 37 H 0.08 3.88 6.06 -2.39 -0.01 3.86 16 38 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 39 H 0.09 2.13 7.93 -2.39 -0.02 2.11 16 40 H 0.11 2.15 6.31 -2.39 -0.02 2.13 16 41 H 0.10 2.56 4.87 -2.39 -0.01 2.55 16 Total: -1.00 -67.38 327.94 6.10 -61.28 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.03 Total: 10.37 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 8.92 Total: -1.85 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -5.87 Total: -116.18 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.38 6.10 -61.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339752731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.634 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds