Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47199 * 22.77556 * 3 2 1 5 5 C 1.53001 * 109.46901 * 262.77026 * 3 2 1 6 6 N 1.46902 * 109.46747 * 142.77409 * 3 2 1 7 7 C 1.46902 * 111.00173 * 303.94893 * 6 3 2 8 8 C 1.38587 * 110.99714 * 180.02562 * 6 3 2 9 9 N 1.31213 * 126.47750 * 58.76664 * 8 6 3 10 10 N 1.28527 * 109.86342 * 180.02562 * 9 8 6 11 11 C 1.30294 * 110.05124 * 359.72160 * 10 9 8 12 12 C 1.50703 * 126.34577 * 180.31141 * 11 10 9 13 13 H 1.09002 * 109.46877 * 180.15454 * 12 11 10 14 14 C 1.52995 * 109.47102 * 300.15495 * 12 11 10 15 15 C 1.52992 * 109.47041 * 60.15495 * 12 11 10 16 16 C 1.50705 * 109.47019 * 174.99773 * 15 12 11 17 17 H 1.07997 * 119.99776 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00004 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47057 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47074 * 119.99796 * 20 18 16 23 23 H 1.48493 * 109.47161 * 239.99971 * 20 18 16 24 24 N 1.36459 * 126.46977 * 238.81708 * 8 6 3 25 25 C 1.46503 * 127.13707 * 359.95889 * 24 8 6 26 26 H 4.18739 * 15.03945 * 0.02562 * 4 2 1 27 27 H 1.08998 * 109.47141 * 300.00076 * 5 3 2 28 28 H 1.08995 * 109.47092 * 60.00474 * 5 3 2 29 29 H 1.09001 * 109.46661 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.47517 * 301.66207 * 7 6 3 31 31 H 1.09000 * 109.46755 * 61.65786 * 7 6 3 32 32 H 1.08999 * 109.47577 * 181.65894 * 7 6 3 33 33 H 1.08993 * 109.47355 * 60.00127 * 14 12 11 34 34 H 1.08996 * 109.47275 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.47143 * 299.99950 * 14 12 11 36 36 H 1.08992 * 109.47327 * 295.00049 * 15 12 11 37 37 H 1.09005 * 109.47468 * 55.00099 * 15 12 11 38 38 H 0.96998 * 120.00609 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.46893 * 95.20881 * 25 24 8 40 40 H 1.08994 * 109.46929 * 215.20977 * 25 24 8 41 41 H 1.09000 * 109.46909 * 335.20744 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9467 -0.3978 5 6 3.1558 0.1824 1.4311 6 7 3.1351 1.1037 -0.8379 7 6 2.5885 1.0137 -2.1985 8 6 4.5204 1.1334 -0.8607 9 7 5.3149 0.1690 -1.2612 10 7 6.5409 0.5370 -1.1460 11 6 6.6008 1.7502 -0.6746 12 6 7.8540 2.5416 -0.4021 13 1 7.5860 3.5223 -0.0089 14 6 8.7136 1.7988 0.6227 15 6 8.6428 2.7114 -1.7020 16 6 9.8309 3.6052 -1.4555 17 1 10.0056 4.0117 -0.4704 18 6 10.6942 3.9046 -2.4880 19 7 10.4806 3.4107 -3.6880 20 14 12.1673 5.0119 -2.1824 21 1 12.1832 5.4328 -0.7584 22 1 13.4163 4.2710 -2.4929 23 1 12.0739 6.2114 -3.0526 24 7 5.3160 2.1710 -0.4700 25 6 4.8832 3.4690 0.0536 26 1 -1.0500 -0.0007 -0.0008 27 1 2.7921 1.1298 1.8288 28 1 2.7929 -0.6360 2.0527 29 1 4.2459 0.1834 1.4310 30 1 2.8682 0.0572 -2.6399 31 1 1.5020 1.0920 -2.1594 32 1 2.9896 1.8252 -2.8056 33 1 8.9815 0.8182 0.2296 34 1 9.6197 2.3715 0.8202 35 1 8.1516 1.6779 1.5488 36 1 8.9868 1.7369 -2.0481 37 1 8.0013 3.1606 -2.4602 38 1 11.0881 3.6211 -4.4143 39 1 4.8881 3.4411 1.1432 40 1 5.5643 4.2460 -0.2932 41 1 3.8750 3.6854 -0.2998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339979557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = 136.688939 kcal Electronic energy + Delta-G solvation = -21518.429016 eV Core-core repulsion = 18436.749365 eV Total energy + Delta-G solvation = -3081.679651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.66167 -38.40137 -35.35009 -34.50168 -33.35219 -32.16365 -30.78504 -28.84039 -27.38393 -26.94462 -25.46739 -24.15238 -24.03977 -21.96945 -20.53134 -19.18409 -18.19115 -17.15811 -16.54447 -16.41531 -15.67076 -15.14294 -15.06818 -14.50705 -14.06846 -13.54654 -13.31375 -13.16607 -12.89685 -12.63970 -12.54118 -12.35692 -11.89319 -11.87523 -11.76318 -11.31705 -11.10237 -10.94938 -10.92222 -10.74167 -10.53772 -10.48092 -10.29204 -9.95346 -9.83800 -9.59679 -9.11648 -8.84937 -8.45735 -8.37400 -6.01491 -4.05230 1.99676 2.21975 2.59369 2.79014 3.26208 3.29907 3.37887 3.40460 3.78549 4.04950 4.42924 4.76026 4.86495 4.95114 5.02499 5.10713 5.22415 5.32728 5.34152 5.39054 5.45911 5.54076 5.57713 5.66172 5.74075 5.86034 5.91956 6.02880 6.08155 6.22891 6.30593 6.49900 6.68452 6.79188 6.89475 7.03567 7.32821 7.42445 7.61221 7.77362 7.97689 8.33541 9.00616 9.15111 9.58537 11.09604 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037425 B = 0.003762 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.982460 B = 7440.858187 C = 7603.661112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.173 4.173 3 C 0.201 3.799 4 H 0.083 0.917 5 C -0.139 4.139 6 N -0.459 5.459 7 C 0.034 3.966 8 C 0.318 3.682 9 N -0.310 5.310 10 N -0.285 5.285 11 C 0.220 3.780 12 C -0.003 4.003 13 H 0.073 0.927 14 C -0.125 4.125 15 C 0.038 3.962 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 N -0.469 5.469 25 C 0.080 3.920 26 H 0.220 0.780 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.032 0.968 37 H 0.013 0.987 38 H 0.261 0.739 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 -2.330 9.291 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.094 3.906 4 H 0.100 0.900 5 C -0.197 4.197 6 N -0.185 5.185 7 C -0.113 4.113 8 C -0.038 4.038 9 N -0.155 5.155 10 N -0.124 5.124 11 C -0.047 4.047 12 C -0.024 4.024 13 H 0.092 0.908 14 C -0.183 4.183 15 C 0.000 4.000 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 N -0.162 5.162 25 C -0.063 4.063 26 H 0.236 0.764 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.734 -3.214 8.792 20.053 hybrid contribution 0.273 1.303 0.092 1.335 sum -17.461 -1.911 8.884 19.685 Atomic orbital electron populations 1.24869 0.95708 1.00057 1.00221 1.22548 0.93552 1.00642 1.00617 1.18556 0.84473 0.92905 0.94638 0.89953 1.21783 1.01525 1.02836 0.93544 1.58646 1.00399 1.45528 1.13886 1.22434 1.00309 1.02209 0.86340 1.21930 0.89923 0.87436 1.04544 1.74522 0.97415 1.23968 1.19557 1.74069 1.10818 1.09825 1.17712 1.25700 0.85834 0.93809 0.99377 1.20021 0.86576 0.94664 1.01155 0.90838 1.21667 0.99543 1.01256 0.95868 1.19114 0.93768 0.98256 0.88875 1.21174 1.09286 1.29552 0.95831 0.92249 1.25007 0.97961 0.96180 0.95146 1.69988 1.37548 1.44467 1.00888 0.86547 0.82828 0.80432 0.78253 1.19686 1.20972 1.21110 1.46270 1.06767 1.14470 1.48668 1.21990 1.02466 0.82006 0.99852 0.76359 0.91507 0.91139 0.91806 0.93438 0.90146 0.90881 0.92026 0.90616 0.94970 0.94932 0.96825 0.92963 0.90544 0.89016 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 19.25 29.55 0.57 -1.07 16 2 C -0.17 -1.85 11.18 -37.12 -0.41 -2.26 16 3 C 0.20 2.43 2.46 -70.50 -0.17 2.25 16 4 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 5 C -0.14 -1.55 9.02 37.16 0.34 -1.22 16 6 N -0.46 -6.13 4.62 -177.97 -0.82 -6.95 16 7 C 0.03 0.42 9.15 60.07 0.55 0.97 16 8 C 0.32 5.25 5.03 -318.86 -1.60 3.64 16 9 N -0.31 -6.13 12.12 30.32 0.37 -5.76 16 10 N -0.28 -6.20 12.18 32.99 0.40 -5.80 16 11 C 0.22 4.32 6.58 -154.02 -1.01 3.31 16 12 C 0.00 -0.06 2.71 -91.78 -0.25 -0.31 16 13 H 0.07 1.35 7.07 -51.93 -0.37 0.98 16 14 C -0.13 -2.33 8.98 37.15 0.33 -2.00 16 15 C 0.04 0.97 4.43 -27.88 -0.12 0.84 16 16 C -0.52 -13.99 8.41 -34.44 -0.29 -14.28 16 17 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 N -0.47 -7.68 3.21 -121.46 -0.39 -8.07 16 25 C 0.08 0.95 10.82 59.85 0.65 1.59 16 26 H 0.22 1.06 7.80 -54.09 -0.42 0.64 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.84 7.22 -51.93 -0.38 0.47 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.82 7.06 -51.93 -0.37 0.45 16 32 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.06 7.45 -51.93 -0.39 0.67 16 41 H 0.09 0.95 8.11 -51.93 -0.42 0.52 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -32.63 348.09 -7.44 -40.07 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.43 Total: -1.99 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.53 Total: -6.97 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.29 Total: -52.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.63 -7.44 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339979557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.762 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds