Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47199 * 22.77556 * 3 2 1 5 5 C 1.53001 * 109.46901 * 262.77026 * 3 2 1 6 6 N 1.46902 * 109.46747 * 142.77409 * 3 2 1 7 7 C 1.46902 * 111.00173 * 303.94893 * 6 3 2 8 8 C 1.38587 * 110.99714 * 180.02562 * 6 3 2 9 9 N 1.31213 * 126.47750 * 58.76664 * 8 6 3 10 10 N 1.28527 * 109.86342 * 180.02562 * 9 8 6 11 11 C 1.30294 * 110.05124 * 359.72160 * 10 9 8 12 12 C 1.50703 * 126.34577 * 180.31141 * 11 10 9 13 13 H 1.09002 * 109.46877 * 180.15454 * 12 11 10 14 14 C 1.52995 * 109.47102 * 300.15495 * 12 11 10 15 15 C 1.52992 * 109.47041 * 60.15495 * 12 11 10 16 16 C 1.50705 * 109.47019 * 174.99773 * 15 12 11 17 17 H 1.07997 * 119.99776 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00004 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47057 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47074 * 119.99796 * 20 18 16 23 23 H 1.48493 * 109.47161 * 239.99971 * 20 18 16 24 24 N 1.36459 * 126.46977 * 238.81708 * 8 6 3 25 25 C 1.46503 * 127.13707 * 359.95889 * 24 8 6 26 26 H 4.18739 * 15.03945 * 0.02562 * 4 2 1 27 27 H 1.08998 * 109.47141 * 300.00076 * 5 3 2 28 28 H 1.08995 * 109.47092 * 60.00474 * 5 3 2 29 29 H 1.09001 * 109.46661 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.47517 * 301.66207 * 7 6 3 31 31 H 1.09000 * 109.46755 * 61.65786 * 7 6 3 32 32 H 1.08999 * 109.47577 * 181.65894 * 7 6 3 33 33 H 1.08993 * 109.47355 * 60.00127 * 14 12 11 34 34 H 1.08996 * 109.47275 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.47143 * 299.99950 * 14 12 11 36 36 H 1.08992 * 109.47327 * 295.00049 * 15 12 11 37 37 H 1.09005 * 109.47468 * 55.00099 * 15 12 11 38 38 H 0.96998 * 120.00609 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.46893 * 95.20881 * 25 24 8 40 40 H 1.08994 * 109.46929 * 215.20977 * 25 24 8 41 41 H 1.09000 * 109.46909 * 335.20744 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9467 -0.3978 5 6 3.1558 0.1824 1.4311 6 7 3.1351 1.1037 -0.8379 7 6 2.5885 1.0137 -2.1985 8 6 4.5204 1.1334 -0.8607 9 7 5.3149 0.1690 -1.2612 10 7 6.5409 0.5370 -1.1460 11 6 6.6008 1.7502 -0.6746 12 6 7.8540 2.5416 -0.4021 13 1 7.5860 3.5223 -0.0089 14 6 8.7136 1.7988 0.6227 15 6 8.6428 2.7114 -1.7020 16 6 9.8309 3.6052 -1.4555 17 1 10.0056 4.0117 -0.4704 18 6 10.6942 3.9046 -2.4880 19 7 10.4806 3.4107 -3.6880 20 14 12.1673 5.0119 -2.1824 21 1 12.1832 5.4328 -0.7584 22 1 13.4163 4.2710 -2.4929 23 1 12.0739 6.2114 -3.0526 24 7 5.3160 2.1710 -0.4700 25 6 4.8832 3.4690 0.0536 26 1 -1.0500 -0.0007 -0.0008 27 1 2.7921 1.1298 1.8288 28 1 2.7929 -0.6360 2.0527 29 1 4.2459 0.1834 1.4310 30 1 2.8682 0.0572 -2.6399 31 1 1.5020 1.0920 -2.1594 32 1 2.9896 1.8252 -2.8056 33 1 8.9815 0.8182 0.2296 34 1 9.6197 2.3715 0.8202 35 1 8.1516 1.6779 1.5488 36 1 8.9868 1.7369 -2.0481 37 1 8.0013 3.1606 -2.4602 38 1 11.0881 3.6211 -4.4143 39 1 4.8881 3.4411 1.1432 40 1 5.5643 4.2460 -0.2932 41 1 3.8750 3.6854 -0.2998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339979557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = 117.394624 kcal Electronic energy + Delta-G solvation = -21519.265680 eV Core-core repulsion = 18436.749365 eV Total energy + Delta-G solvation = -3082.516316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.06591 -39.46366 -37.05259 -35.83958 -34.48225 -33.95382 -31.64058 -30.33554 -28.88319 -28.44811 -26.54651 -25.88873 -25.08152 -23.70883 -21.78623 -20.69474 -19.04238 -18.63817 -18.22692 -17.60888 -17.03825 -16.49269 -16.22315 -16.07016 -15.50342 -14.98297 -14.58178 -14.39765 -14.19983 -13.85811 -13.79426 -13.49842 -13.43237 -12.98224 -12.83890 -12.78549 -12.77460 -12.69240 -12.44442 -12.23486 -12.02569 -11.76521 -11.48942 -11.46686 -11.22428 -11.15357 -11.03514 -10.55196 -10.01388 -9.96800 -8.15689 -6.27252 0.67672 1.09871 1.44426 1.45629 1.58160 1.74170 1.86849 1.88383 2.44535 2.77081 3.18732 3.28097 3.43378 3.74404 3.85344 3.98554 4.08000 4.16313 4.28687 4.35973 4.43337 4.50445 4.52970 4.55676 4.64538 4.70871 4.73833 4.79969 5.00797 5.04114 5.07210 5.11034 5.18410 5.38048 5.46591 5.48050 5.52807 5.70414 5.84696 6.15732 6.21613 6.64215 6.89073 7.42117 7.69925 8.97069 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037425 B = 0.003762 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.982460 B = 7440.858187 C = 7603.661112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.222 4.222 3 C 0.202 3.798 4 H 0.063 0.937 5 C -0.132 4.132 6 N -0.451 5.451 7 C 0.036 3.964 8 C 0.340 3.660 9 N -0.347 5.347 10 N -0.327 5.327 11 C 0.206 3.794 12 C 0.008 3.992 13 H 0.099 0.901 14 C -0.118 4.118 15 C 0.050 3.950 16 C -0.526 4.526 17 H 0.078 0.922 18 C -0.003 4.003 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.252 1.252 22 H -0.285 1.285 23 H -0.282 1.282 24 N -0.465 5.465 25 C 0.071 3.929 26 H 0.257 0.743 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.063 0.937 36 H -0.011 1.011 37 H -0.021 1.021 38 H 0.261 0.739 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.019 -0.727 11.501 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.222 4.222 3 C 0.096 3.904 4 H 0.081 0.919 5 C -0.190 4.190 6 N -0.177 5.177 7 C -0.111 4.111 8 C -0.018 4.018 9 N -0.191 5.191 10 N -0.166 5.166 11 C -0.062 4.062 12 C -0.013 4.013 13 H 0.117 0.883 14 C -0.176 4.176 15 C 0.012 3.988 16 C -0.564 4.564 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.578 5.578 20 Si 0.791 3.209 21 H -0.175 1.175 22 H -0.211 1.211 23 H -0.208 1.208 24 N -0.156 5.156 25 C -0.071 4.071 26 H 0.273 0.727 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.008 0.992 37 H -0.003 1.003 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.689 -1.597 11.032 22.626 hybrid contribution 0.677 0.764 -0.610 1.189 sum -19.012 -0.833 10.423 21.697 Atomic orbital electron populations 1.25729 0.96322 0.97182 0.97424 1.22361 0.93404 1.03248 1.03207 1.18453 0.86036 0.91408 0.94548 0.91909 1.21737 0.99760 1.04068 0.93430 1.58946 0.98067 1.46105 1.14608 1.22475 1.01769 1.01300 0.85582 1.22249 0.91041 0.86604 1.01878 1.74430 0.97237 1.25727 1.21675 1.73960 1.12272 1.11429 1.18962 1.25418 0.86942 0.93569 1.00300 1.19788 0.86541 0.96361 0.98615 0.88324 1.21581 0.99646 0.99775 0.96559 1.18856 0.93786 0.95395 0.90801 1.21612 1.09296 1.28992 0.96499 0.90385 1.26019 1.01383 0.97853 0.94802 1.70157 1.39082 1.46443 1.02141 0.85372 0.78362 0.78036 0.79119 1.17510 1.21088 1.20817 1.46437 1.05530 1.15717 1.47945 1.22384 1.03378 0.79777 1.01514 0.72723 0.90473 0.89561 0.94316 0.94683 0.87501 0.91431 0.94139 0.90643 0.91816 0.99216 1.00289 0.93008 0.87851 0.88680 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 19.25 74.32 1.43 -0.55 16 2 C -0.22 -4.22 11.18 31.13 0.35 -3.87 16 3 C 0.20 4.73 2.46 43.11 0.11 4.84 16 4 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 5 C -0.13 -2.80 9.02 71.98 0.65 -2.16 16 6 N -0.45 -11.68 4.62 -716.99 -3.31 -14.99 16 7 C 0.04 0.84 9.15 127.69 1.17 2.01 16 8 C 0.34 11.27 5.03 260.11 1.31 12.58 16 9 N -0.35 -14.28 12.12 -58.00 -0.70 -14.98 16 10 N -0.33 -14.91 12.18 -49.54 -0.60 -15.52 16 11 C 0.21 8.28 6.58 137.64 0.91 9.19 16 12 C 0.01 0.32 2.71 -11.54 -0.03 0.29 16 13 H 0.10 3.46 7.07 -2.39 -0.02 3.45 16 14 C -0.12 -4.33 8.98 71.98 0.65 -3.68 16 15 C 0.05 2.64 4.43 29.85 0.13 2.77 16 16 C -0.53 -28.50 8.41 25.60 0.22 -28.28 16 17 H 0.08 3.86 7.06 -2.91 -0.02 3.84 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 20 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 21 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 N -0.46 -14.98 3.21 -538.17 -1.73 -16.71 16 25 C 0.07 1.51 10.82 127.77 1.38 2.89 16 26 H 0.26 1.12 7.80 -4.42 -0.03 1.09 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.00 7.22 -2.39 -0.02 0.99 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.95 7.06 -2.39 -0.02 1.93 16 32 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 2.75 6.95 -2.39 -0.02 2.73 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 2.00 7.45 -2.39 -0.02 1.98 16 41 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 Total: -1.00 -74.53 348.09 5.69 -68.84 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.00 Total: 9.35 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 8.72 Total: -3.69 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.06 Total: -119.79 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -74.53 5.69 -68.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339979557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.239 kcal (2) G-P(sol) polarization free energy of solvation -74.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds