Wall clock time and date at job start Mon Mar 30 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 120.00067 * 2 1 4 4 N 1.46897 * 109.46755 * 124.99943 * 3 2 1 5 5 C 1.46907 * 110.99976 * 66.05000 * 4 3 2 6 6 C 1.50702 * 109.47061 * 199.66143 * 5 4 3 7 7 C 1.31000 * 119.99793 * 124.91378 * 6 5 4 8 8 C 1.38581 * 111.00119 * 189.99968 * 4 3 2 9 9 N 1.31221 * 126.47192 * 304.11926 * 8 4 3 10 10 N 1.28524 * 109.86098 * 180.02562 * 9 8 4 11 11 C 1.30289 * 110.05280 * 0.02562 * 10 9 8 12 12 C 1.50707 * 126.34887 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47226 * 89.96967 * 12 11 10 14 14 C 1.50705 * 109.46867 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99943 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00164 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47237 * 89.99607 * 18 16 14 20 20 H 1.48505 * 109.47023 * 209.99368 * 18 16 14 21 21 H 1.48496 * 109.46935 * 329.99452 * 18 16 14 22 22 N 1.36448 * 126.47346 * 124.13228 * 8 4 3 23 23 C 1.46498 * 127.13962 * 359.97438 * 22 8 4 24 24 H 1.07994 * 119.99568 * 359.97438 * 1 2 3 25 25 H 1.07991 * 119.99679 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00143 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46914 * 5.00346 * 3 2 1 28 28 H 1.08995 * 109.47023 * 245.00291 * 3 2 1 29 29 H 1.08996 * 109.46728 * 319.66501 * 5 4 3 30 30 H 1.08998 * 109.47288 * 79.66337 * 5 4 3 31 31 H 1.07997 * 120.00364 * 304.91906 * 6 5 4 32 32 H 1.08000 * 120.00404 * 180.02562 * 7 6 5 33 33 H 1.08008 * 119.99986 * 359.97438 * 7 6 5 34 34 H 1.08998 * 109.46834 * 209.97497 * 12 11 10 35 35 H 1.09001 * 109.46727 * 329.96903 * 12 11 10 36 36 H 1.08994 * 109.47206 * 299.99842 * 13 12 11 37 37 H 1.08996 * 109.46898 * 60.00454 * 13 12 11 38 38 H 0.96996 * 120.00075 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.46951 * 264.82176 * 23 22 8 40 40 H 1.09000 * 109.46620 * 24.82456 * 23 22 8 41 41 H 1.09002 * 109.47257 * 144.81820 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.0495 0.3203 0.9742 6 6 4.6801 0.0352 2.3129 7 6 4.7279 -1.1929 2.7661 8 6 3.5420 2.5951 1.2991 9 7 4.1928 3.2876 0.3942 10 7 4.5586 4.4164 0.8880 11 6 4.1667 4.5101 2.1270 12 6 4.3986 5.6776 3.0514 13 6 3.2371 6.6655 2.9265 14 6 3.4694 7.8333 3.8505 15 1 4.3565 7.8671 4.4655 16 6 2.5489 8.8579 3.9114 17 7 1.4683 8.8165 3.1628 18 14 2.8364 10.3050 5.0571 19 1 3.5943 11.3614 4.3397 20 1 1.5292 10.8502 5.5036 21 1 3.6142 9.8537 6.2388 22 7 3.5044 3.3535 2.4328 23 6 2.8838 3.0015 3.7123 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 3.6152 -0.5960 0.5745 30 1 4.8091 0.6924 0.2867 31 1 5.0926 0.8434 2.8987 32 1 5.1795 -1.3973 3.7257 33 1 4.3150 -2.0011 2.1805 34 1 4.4628 5.3201 4.0791 35 1 5.3298 6.1755 2.7812 36 1 3.1730 7.0230 1.8989 37 1 2.3060 6.1676 3.1968 38 1 0.8209 9.5375 3.2053 39 1 1.8768 3.4166 3.7541 40 1 2.8338 1.9166 3.8054 41 1 3.4791 3.4092 4.5293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340016685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:33 Heat of formation + Delta-G solvation = 124.141250 kcal Electronic energy + Delta-G solvation = -21223.482644 eV Core-core repulsion = 18141.258884 eV Total energy + Delta-G solvation = -3082.223760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59911 -38.33986 -34.81685 -34.46210 -33.94607 -32.97997 -31.56392 -28.57363 -27.28714 -26.88634 -25.39058 -24.61201 -21.91463 -21.01419 -20.24095 -20.02098 -19.33121 -17.00020 -16.70817 -16.31525 -16.01238 -15.44159 -15.24256 -14.57170 -14.46572 -13.80175 -13.58049 -13.23599 -13.14566 -13.01340 -12.80103 -12.50099 -12.25900 -11.93076 -11.36599 -11.35831 -11.13332 -11.10190 -10.99534 -10.69941 -10.47120 -10.03294 -9.87450 -9.78942 -9.76659 -9.57608 -9.23982 -8.74532 -8.42737 -8.40693 -6.06191 -4.10489 1.84715 1.98351 2.22319 2.67002 3.25052 3.29533 3.36034 3.38371 3.89093 4.40486 4.50246 4.74031 4.82749 4.87444 5.01090 5.03075 5.17533 5.22543 5.29940 5.34629 5.44009 5.49841 5.55554 5.63741 5.66102 5.68086 5.85836 6.28989 6.34019 6.36166 6.37644 6.43409 6.44949 6.54154 6.63320 6.67270 6.94082 7.45655 7.54704 7.67892 7.91058 8.28426 8.95587 9.14745 9.54240 11.04956 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.003858 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.857667 B = 7255.587175 C = 7702.579771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.150 4.150 3 C 0.094 3.906 4 N -0.454 5.454 5 C 0.085 3.915 6 C -0.143 4.143 7 C -0.183 4.183 8 C 0.319 3.681 9 N -0.314 5.314 10 N -0.297 5.297 11 C 0.216 3.784 12 C -0.031 4.031 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.465 5.465 23 C 0.082 3.918 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -20.741 -1.070 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C -0.032 4.032 4 N -0.178 5.178 5 C -0.041 4.041 6 C -0.162 4.162 7 C -0.220 4.220 8 C -0.038 4.038 9 N -0.158 5.158 10 N -0.137 5.137 11 C -0.052 4.052 12 C -0.071 4.071 13 C -0.006 4.006 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 N -0.157 5.157 23 C -0.061 4.061 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.237 -20.399 -1.994 20.534 hybrid contribution -0.280 0.627 1.240 1.417 sum 0.957 -19.772 -0.754 19.810 Atomic orbital electron populations 1.23868 0.95738 1.02124 0.99683 1.22780 0.95931 0.97470 1.00615 1.21242 0.94113 0.96675 0.91217 1.58665 1.16672 0.98844 1.43667 1.21420 0.92360 0.94691 0.95671 1.22785 0.98772 0.97757 0.96851 1.23771 1.01249 0.96386 1.00627 1.22101 1.03027 0.93129 0.85507 1.74458 1.14439 1.01679 1.25221 1.74043 1.21948 1.11654 1.06080 1.25652 0.95187 0.88911 0.95403 1.20461 1.03504 0.89363 0.93798 1.19066 0.91027 0.92262 0.98290 1.21136 1.06729 1.04724 1.23674 0.92284 1.25010 0.95067 0.98324 0.95826 1.69974 1.10577 1.33020 1.39518 0.86554 0.77519 0.82683 0.81014 1.20519 1.21231 1.19795 1.46191 1.42607 1.14613 1.12276 1.21995 0.99311 1.02640 0.82190 0.88327 0.88166 0.87147 0.89833 0.91857 0.89110 0.91881 0.87849 0.88301 0.88476 0.91174 0.89272 0.95638 0.96721 0.92858 0.90003 0.89137 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 14.32 29.01 0.42 -1.10 16 2 C -0.15 -1.39 9.17 -36.02 -0.33 -1.72 16 3 C 0.09 1.13 5.26 -4.97 -0.03 1.11 16 4 N -0.45 -5.96 4.42 -177.25 -0.78 -6.75 16 5 C 0.09 0.95 5.27 -4.97 -0.03 0.92 16 6 C -0.14 -1.51 9.43 -36.02 -0.34 -1.85 16 7 C -0.18 -1.53 14.32 29.01 0.42 -1.12 16 8 C 0.32 5.36 5.96 -318.87 -1.90 3.46 16 9 N -0.31 -6.23 12.02 30.31 0.36 -5.87 16 10 N -0.30 -6.48 12.18 32.99 0.40 -6.08 16 11 C 0.22 4.31 7.32 -154.01 -1.13 3.18 16 12 C -0.03 -0.64 5.53 -27.88 -0.15 -0.79 16 13 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 14 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 N -0.46 -7.89 3.21 -121.46 -0.39 -8.28 16 23 C 0.08 1.07 11.01 59.85 0.66 1.73 16 24 H 0.10 0.89 7.84 -52.49 -0.41 0.47 16 25 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 26 H 0.11 0.86 6.74 -52.49 -0.35 0.50 16 27 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 28 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 29 H 0.09 0.79 5.78 -51.93 -0.30 0.49 16 30 H 0.06 0.80 7.89 -51.93 -0.41 0.39 16 31 H 0.10 1.25 8.02 -52.49 -0.42 0.83 16 32 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.10 0.68 7.84 -52.48 -0.41 0.27 16 34 H 0.07 1.27 7.38 -51.93 -0.38 0.88 16 35 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 41 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -32.32 350.68 -8.77 -41.08 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.40 Total: -1.17 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.96 Total: -8.58 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.33 Total: -52.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.32 -8.77 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340016685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.225 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds