Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50708 * 120.00067 * 2 1 4 4 N 1.46897 * 109.46755 * 124.99943 * 3 2 1 5 5 C 1.46907 * 110.99976 * 66.05000 * 4 3 2 6 6 C 1.50702 * 109.47061 * 199.66143 * 5 4 3 7 7 C 1.31000 * 119.99793 * 124.91378 * 6 5 4 8 8 C 1.38581 * 111.00119 * 189.99968 * 4 3 2 9 9 N 1.31221 * 126.47192 * 304.11926 * 8 4 3 10 10 N 1.28524 * 109.86098 * 180.02562 * 9 8 4 11 11 C 1.30289 * 110.05280 * 0.02562 * 10 9 8 12 12 C 1.50707 * 126.34887 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47226 * 89.96967 * 12 11 10 14 14 C 1.50705 * 109.46867 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99943 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00164 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47237 * 89.99607 * 18 16 14 20 20 H 1.48505 * 109.47023 * 209.99368 * 18 16 14 21 21 H 1.48496 * 109.46935 * 329.99452 * 18 16 14 22 22 N 1.36448 * 126.47346 * 124.13228 * 8 4 3 23 23 C 1.46498 * 127.13962 * 359.97438 * 22 8 4 24 24 H 1.07994 * 119.99568 * 359.97438 * 1 2 3 25 25 H 1.07991 * 119.99679 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00143 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46914 * 5.00346 * 3 2 1 28 28 H 1.08995 * 109.47023 * 245.00291 * 3 2 1 29 29 H 1.08996 * 109.46728 * 319.66501 * 5 4 3 30 30 H 1.08998 * 109.47288 * 79.66337 * 5 4 3 31 31 H 1.07997 * 120.00364 * 304.91906 * 6 5 4 32 32 H 1.08000 * 120.00404 * 180.02562 * 7 6 5 33 33 H 1.08008 * 119.99986 * 359.97438 * 7 6 5 34 34 H 1.08998 * 109.46834 * 209.97497 * 12 11 10 35 35 H 1.09001 * 109.46727 * 329.96903 * 12 11 10 36 36 H 1.08994 * 109.47206 * 299.99842 * 13 12 11 37 37 H 1.08996 * 109.46898 * 60.00454 * 13 12 11 38 38 H 0.96996 * 120.00075 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.46951 * 264.82176 * 23 22 8 40 40 H 1.09000 * 109.46620 * 24.82456 * 23 22 8 41 41 H 1.09002 * 109.47257 * 144.81820 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.0495 0.3203 0.9742 6 6 4.6801 0.0352 2.3129 7 6 4.7279 -1.1929 2.7661 8 6 3.5420 2.5951 1.2991 9 7 4.1928 3.2876 0.3942 10 7 4.5586 4.4164 0.8880 11 6 4.1667 4.5101 2.1270 12 6 4.3986 5.6776 3.0514 13 6 3.2371 6.6655 2.9265 14 6 3.4694 7.8333 3.8505 15 1 4.3565 7.8671 4.4655 16 6 2.5489 8.8579 3.9114 17 7 1.4683 8.8165 3.1628 18 14 2.8364 10.3050 5.0571 19 1 3.5943 11.3614 4.3397 20 1 1.5292 10.8502 5.5036 21 1 3.6142 9.8537 6.2388 22 7 3.5044 3.3535 2.4328 23 6 2.8838 3.0015 3.7123 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 3.6152 -0.5960 0.5745 30 1 4.8091 0.6924 0.2867 31 1 5.0926 0.8434 2.8987 32 1 5.1795 -1.3973 3.7257 33 1 4.3150 -2.0011 2.1805 34 1 4.4628 5.3201 4.0791 35 1 5.3298 6.1755 2.7812 36 1 3.1730 7.0230 1.8989 37 1 2.3060 6.1676 3.1968 38 1 0.8209 9.5375 3.2053 39 1 1.8768 3.4166 3.7541 40 1 2.8338 1.9166 3.8054 41 1 3.4791 3.4092 4.5293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340016685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = 106.404139 kcal Electronic energy + Delta-G solvation = -21224.251782 eV Core-core repulsion = 18141.258884 eV Total energy + Delta-G solvation = -3082.992899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -44.03845 -39.36954 -36.38533 -35.66219 -35.20340 -34.16798 -33.22750 -30.18980 -28.50949 -27.73905 -27.20917 -25.74496 -23.80151 -22.15483 -21.57758 -21.05698 -20.23349 -18.65389 -18.10445 -17.73589 -17.13040 -16.58587 -16.46872 -16.23768 -15.46240 -15.31205 -14.95801 -14.42453 -14.33574 -14.24593 -13.95718 -13.70396 -13.63544 -13.18580 -12.87418 -12.81927 -12.66239 -12.49081 -12.20082 -12.06235 -11.86616 -11.79439 -11.61819 -11.31368 -11.10798 -10.67151 -10.57714 -10.39135 -9.96285 -9.80407 -8.20654 -6.33208 0.66447 0.98328 1.40836 1.43478 1.45253 1.51381 1.55974 1.73994 2.42145 2.81409 3.13903 3.44751 3.66774 3.80107 3.91714 3.98965 4.02646 4.20764 4.22395 4.30636 4.35454 4.54551 4.60268 4.64138 4.65992 4.70290 4.77621 4.88794 4.98201 5.00404 5.06181 5.43269 5.51875 5.52257 5.57905 5.64728 5.68205 5.77814 5.81583 5.83513 6.14267 6.18928 6.82801 7.37100 7.65579 8.91612 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.003858 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.857667 B = 7255.587175 C = 7702.579771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.154 4.154 3 C 0.093 3.907 4 N -0.447 5.447 5 C 0.088 3.912 6 C -0.174 4.174 7 C -0.152 4.152 8 C 0.339 3.661 9 N -0.348 5.348 10 N -0.333 5.333 11 C 0.200 3.800 12 C -0.015 4.015 13 C 0.043 3.957 14 C -0.539 4.539 15 H 0.074 0.926 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.255 1.255 22 N -0.463 5.463 23 C 0.076 3.924 24 H 0.088 0.912 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.122 0.878 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.089 0.911 36 H -0.019 1.019 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -22.994 0.712 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.033 4.033 4 N -0.173 5.173 5 C -0.038 4.038 6 C -0.192 4.192 7 C -0.189 4.189 8 C -0.018 4.018 9 N -0.192 5.192 10 N -0.173 5.173 11 C -0.069 4.069 12 C -0.054 4.054 13 C 0.004 3.996 14 C -0.577 4.577 15 H 0.092 0.908 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.179 1.179 22 N -0.154 5.154 23 C -0.065 4.065 24 H 0.106 0.894 25 H 0.143 0.857 26 H 0.153 0.847 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.000 1.000 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.364 -22.673 -0.198 22.715 hybrid contribution -0.378 1.180 0.651 1.399 sum 0.986 -21.494 0.452 21.521 Atomic orbital electron populations 1.24054 0.95603 1.02866 0.98129 1.22723 0.96024 0.96551 1.01903 1.21257 0.93626 0.97954 0.90472 1.59011 1.17093 0.97208 1.43993 1.21509 0.91418 0.94807 0.96043 1.22616 1.01362 0.98281 0.96976 1.24027 0.98444 0.95778 1.00676 1.22541 1.00689 0.93831 0.84731 1.74372 1.16438 1.01828 1.26564 1.73926 1.23293 1.12937 1.07176 1.25421 0.96482 0.89913 0.95081 1.20166 1.01114 0.88574 0.95581 1.18833 0.92266 0.93130 0.95339 1.21597 1.07095 1.05224 1.23769 0.90814 1.26002 0.94671 1.01547 0.97479 1.70127 1.11773 1.34197 1.41450 0.85390 0.77557 0.78617 0.79143 1.20186 1.21026 1.17905 1.46363 1.41931 1.13633 1.13511 1.22289 0.99028 1.04339 0.80853 0.89358 0.85677 0.84711 0.92090 0.92732 0.86022 0.93984 0.89901 0.87077 0.86336 0.88315 0.89244 1.00010 0.98730 0.92806 0.90387 0.86697 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 14.32 67.78 0.97 -1.57 16 2 C -0.15 -2.53 9.17 25.65 0.24 -2.29 16 3 C 0.09 2.24 5.26 85.56 0.45 2.69 16 4 N -0.45 -11.50 4.42 -714.69 -3.16 -14.66 16 5 C 0.09 1.84 5.27 85.56 0.45 2.29 16 6 C -0.17 -3.35 9.43 25.65 0.24 -3.11 16 7 C -0.15 -2.01 14.32 67.78 0.97 -1.04 16 8 C 0.34 11.62 5.96 260.11 1.55 13.17 16 9 N -0.35 -14.43 12.02 -58.00 -0.70 -15.13 16 10 N -0.33 -15.20 12.18 -49.53 -0.60 -15.81 16 11 C 0.20 8.22 7.32 137.64 1.01 9.23 16 12 C -0.01 -0.61 5.53 29.85 0.16 -0.44 16 13 C 0.04 2.25 4.96 29.85 0.15 2.40 16 14 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 15 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 18 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 N -0.46 -15.88 3.21 -538.18 -1.73 -17.61 16 23 C 0.08 1.92 11.01 127.77 1.41 3.33 16 24 H 0.09 1.51 7.84 -2.91 -0.02 1.49 16 25 H 0.13 1.30 8.06 -2.92 -0.02 1.27 16 26 H 0.14 1.57 6.74 -2.91 -0.02 1.55 16 27 H 0.06 1.71 7.71 -2.39 -0.02 1.69 16 28 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 29 H 0.12 1.74 5.78 -2.39 -0.01 1.73 16 30 H 0.04 1.06 7.89 -2.39 -0.02 1.04 16 31 H 0.08 1.94 8.02 -2.91 -0.02 1.92 16 32 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.12 1.09 7.84 -2.91 -0.02 1.07 16 34 H 0.10 3.46 7.38 -2.39 -0.02 3.44 16 35 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 36 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.11 2.31 8.11 -2.39 -0.02 2.29 16 41 H 0.10 2.28 7.42 -2.39 -0.02 2.26 16 Total: -1.00 -72.80 350.68 5.41 -67.39 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.99 Total: 11.44 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 8.29 Total: -4.24 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.90 Total: -119.88 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -72.80 5.41 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340016685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.799 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds