Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47154 * 2 1 4 4 C 1.36734 * 127.13670 * 84.45143 * 3 2 1 5 5 C 1.50700 * 126.35069 * 359.97438 * 4 3 2 6 6 C 1.53003 * 109.47224 * 269.71869 * 5 4 3 7 7 C 1.50695 * 109.46781 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00408 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99750 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99903 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99679 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47124 * 90.00172 * 11 9 7 13 13 H 1.48510 * 109.46962 * 210.00267 * 11 9 7 14 14 H 1.48499 * 109.47545 * 330.00076 * 11 9 7 15 15 N 1.30300 * 107.30213 * 179.73262 * 4 3 2 16 16 N 1.28521 * 110.05392 * 0.25917 * 15 4 3 17 17 C 1.31216 * 109.86232 * 0.02562 * 16 15 4 18 18 N 1.38583 * 126.47427 * 179.97438 * 17 16 15 19 19 C 1.46847 * 110.99883 * 25.98197 * 18 17 16 20 20 C 1.50141 * 110.26998 * 287.55310 * 19 18 17 21 21 C 1.29817 * 123.28349 * 342.90915 * 20 19 18 22 22 C 1.50307 * 122.89524 * 0.42088 * 21 20 19 23 23 C 1.47229 * 111.00206 * 263.05017 * 18 17 16 24 24 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47350 * 300.00343 * 1 2 3 26 26 H 1.09009 * 109.46867 * 60.00362 * 1 2 3 27 27 H 1.09006 * 109.47218 * 239.99267 * 2 1 3 28 28 H 1.09005 * 109.46539 * 120.00025 * 2 1 3 29 29 H 1.08994 * 109.47280 * 149.71436 * 5 4 3 30 30 H 1.09007 * 109.46607 * 29.71954 * 5 4 3 31 31 H 1.08996 * 109.46921 * 59.99290 * 6 5 4 32 32 H 1.08998 * 109.46861 * 299.99815 * 6 5 4 33 33 H 0.97005 * 119.99817 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.33679 * 47.78489 * 19 18 17 35 35 H 1.09001 * 109.33336 * 167.28927 * 19 18 17 36 36 H 1.07999 * 118.35421 * 162.90938 * 20 19 18 37 37 H 1.07999 * 118.55400 * 180.39166 * 21 20 19 38 38 H 1.09001 * 109.43080 * 223.40445 * 22 21 20 39 39 H 1.08999 * 109.39079 * 103.52819 * 22 21 20 40 40 H 1.09010 * 109.64212 * 174.27705 * 23 18 17 41 41 H 1.09000 * 109.63990 * 294.88518 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1941 2.1946 1.0849 5 6 1.9191 1.8375 2.5230 6 6 0.4747 2.2022 2.8718 7 6 0.1997 1.8445 4.3096 8 1 0.9771 1.4010 4.9140 9 6 -1.0446 2.0834 4.8535 10 7 -1.2846 1.7717 6.1084 11 14 -2.3890 2.8511 3.8082 12 1 -3.1641 1.7792 3.1333 13 1 -3.2955 3.6472 4.6742 14 1 -1.7763 3.7373 2.7862 15 7 2.6485 3.3340 0.6455 16 7 2.7656 3.2978 -0.6339 17 6 2.3886 2.1240 -1.0831 18 7 2.3751 1.7140 -2.4068 19 6 3.3639 2.4573 -3.1981 20 6 2.9036 3.8705 -3.4111 21 6 1.6751 4.2532 -3.2389 22 6 0.5833 3.3191 -2.7977 23 6 1.0337 1.8691 -2.9936 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 2.5999 2.3895 3.1710 30 1 2.0685 0.7673 2.6665 31 1 -0.2060 1.6502 2.2237 32 1 0.3254 3.2723 2.7282 33 1 -2.1601 1.9395 6.4910 34 1 4.3174 2.4643 -2.6699 35 1 3.4929 1.9699 -4.1645 36 1 3.6309 4.6053 -3.7232 37 1 1.4267 5.2884 -3.4202 38 1 -0.3130 3.5035 -3.3899 39 1 0.3635 3.4913 -1.7441 40 1 1.0705 1.6376 -4.0582 41 1 0.3354 1.1978 -2.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341186796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = 101.264873 kcal Electronic energy + Delta-G solvation = -22287.237032 eV Core-core repulsion = 19204.021277 eV Total energy + Delta-G solvation = -3083.215754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.75318 -39.38919 -35.63013 -34.19013 -32.97014 -31.76034 -31.11993 -30.35933 -28.91210 -25.77622 -24.81309 -23.86059 -23.46375 -21.54292 -20.97197 -19.71161 -18.47789 -17.02148 -16.76393 -16.40259 -16.04854 -15.05210 -14.73777 -14.49728 -14.33108 -14.03730 -13.48202 -13.35738 -13.07757 -12.95510 -12.74486 -12.65829 -12.18369 -12.14147 -11.83042 -11.58031 -11.40924 -11.15844 -11.07324 -10.93748 -10.39699 -10.17642 -10.05982 -9.85156 -9.81119 -9.29780 -9.23325 -8.93762 -8.60452 -8.16463 -6.11674 -4.10670 2.05082 2.26140 2.50406 3.22081 3.23963 3.33899 3.39260 3.73580 4.38901 4.59553 4.66168 4.78317 4.83286 4.92827 4.96048 5.02572 5.17904 5.21918 5.27647 5.34107 5.42042 5.47260 5.50896 5.56659 5.65592 5.73587 5.86792 5.94022 6.11324 6.20211 6.27109 6.35590 6.46760 6.51347 6.59619 6.82966 6.92981 7.15787 7.28084 7.41966 7.68219 8.43035 8.92066 9.16029 9.50147 11.01344 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.005145 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.096328 B = 5441.050482 C = 5572.753956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 N -0.469 5.469 4 C 0.206 3.794 5 C -0.022 4.022 6 C -0.004 4.004 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.873 3.127 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.265 1.265 15 N -0.299 5.299 16 N -0.306 5.306 17 C 0.326 3.674 18 N -0.451 5.451 19 C 0.100 3.900 20 C -0.172 4.172 21 C -0.140 4.140 22 C -0.125 4.125 23 C 0.054 3.946 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.012 0.988 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -3.426 -20.799 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.014 4.014 3 N -0.163 5.163 4 C -0.061 4.061 5 C -0.062 4.062 6 C -0.043 4.043 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.190 1.190 15 N -0.138 5.138 16 N -0.149 5.149 17 C -0.031 4.031 18 N -0.174 5.174 19 C -0.027 4.027 20 C -0.191 4.191 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.073 4.073 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.467 -2.548 -20.678 21.540 hybrid contribution -1.550 -0.067 -0.429 1.610 sum 3.916 -2.614 -21.107 21.626 Atomic orbital electron populations 1.22357 0.93973 1.03516 1.03841 1.21814 0.95831 0.79054 1.04725 1.46347 1.50146 1.13659 1.06150 1.25558 1.00187 0.87708 0.92636 1.20209 1.01389 1.01518 0.83059 1.19611 0.89868 0.97207 0.97593 1.21018 0.98816 1.41772 0.94382 0.90602 1.24949 0.98372 0.94894 0.94749 1.69897 1.22884 1.48051 1.12916 0.86874 0.82149 0.80045 0.80884 1.20314 1.21136 1.18954 1.74050 1.18535 1.18497 1.02714 1.74652 1.21798 1.14540 1.03959 1.22270 1.04397 0.88522 0.87868 1.59379 1.07712 1.53853 0.96491 1.20954 0.94474 0.89923 0.97331 1.22456 0.96792 0.97969 1.01873 1.21874 0.94640 0.99308 1.00064 1.21050 0.98191 0.94782 1.02313 1.22459 0.88226 0.96088 1.00518 0.90303 0.90120 0.92469 0.88573 0.88526 0.88806 0.90722 0.96981 0.95780 0.92595 0.89288 0.88720 0.87199 0.87741 0.90346 0.90744 0.89013 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.33 6.69 -4.04 -0.03 1.30 16 3 N -0.47 -7.49 2.81 -114.08 -0.32 -7.81 16 4 C 0.21 3.92 7.32 -154.02 -1.13 2.79 16 5 C -0.02 -0.43 5.53 -27.88 -0.15 -0.58 16 6 C 0.00 -0.10 4.02 -27.88 -0.11 -0.22 16 7 C -0.52 -14.28 9.66 -34.44 -0.33 -14.61 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 11 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 15 N -0.30 -6.24 12.18 32.99 0.40 -5.84 16 16 N -0.31 -5.76 9.83 30.31 0.30 -5.46 16 17 C 0.33 5.18 5.37 -318.87 -1.71 3.47 16 18 N -0.45 -5.59 5.03 -175.92 -0.89 -6.48 16 19 C 0.10 1.09 5.72 -5.27 -0.03 1.06 16 20 C -0.17 -1.98 8.82 -35.96 -0.32 -2.30 16 21 C -0.14 -1.72 9.24 -35.88 -0.33 -2.05 16 22 C -0.13 -1.51 5.58 -28.03 -0.16 -1.67 16 23 C 0.05 0.58 6.02 -3.60 -0.02 0.55 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.25 5.73 -51.93 -0.30 0.95 16 26 H 0.06 0.67 6.18 -51.92 -0.32 0.34 16 27 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 28 H 0.10 1.12 7.42 -51.93 -0.39 0.73 16 29 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 30 H 0.07 1.32 7.39 -51.93 -0.38 0.94 16 31 H 0.01 0.27 5.16 -51.93 -0.27 0.01 16 32 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.09 1.05 8.02 -51.93 -0.42 0.63 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.10 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.17 7.36 -51.93 -0.38 0.79 16 40 H 0.09 0.76 8.08 -51.92 -0.42 0.34 16 41 H 0.08 0.85 6.18 -51.93 -0.32 0.53 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -32.53 323.49 -9.68 -42.21 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.11 Total: 0.10 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -4.04 Total: -12.09 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.27 Total: -51.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.53 -9.68 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341186796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.470 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds