Wall clock time and date at job start Mon Mar 30 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47258 * 42.63641 * 3 2 1 5 5 C 1.46901 * 110.99968 * 288.28066 * 4 3 2 6 6 C 1.52997 * 109.47186 * 160.29185 * 5 4 3 7 7 C 1.38583 * 111.00336 * 164.32435 * 4 3 2 8 8 N 1.31220 * 126.47109 * 107.31120 * 7 4 3 9 9 N 1.28527 * 109.85493 * 180.02562 * 8 7 4 10 10 C 1.30295 * 110.05798 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.34790 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47301 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47159 * 300.02186 * 11 10 9 14 14 C 1.53007 * 109.47335 * 60.02023 * 11 10 9 15 15 C 1.50693 * 109.47063 * 175.00057 * 14 11 10 16 16 H 1.08000 * 120.00164 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00215 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00461 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99690 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46710 * 90.00265 * 19 17 15 21 21 H 1.48497 * 109.47267 * 210.00426 * 19 17 15 22 22 H 1.48499 * 109.46916 * 330.00244 * 19 17 15 23 23 N 1.36456 * 126.47275 * 287.60228 * 7 4 3 24 24 C 1.46497 * 127.13547 * 0.02562 * 23 7 4 25 25 H 4.40883 * 5.52168 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47331 * 282.63220 * 3 2 1 27 27 H 1.09005 * 109.47340 * 162.63333 * 3 2 1 28 28 H 1.08996 * 109.46729 * 280.28657 * 5 4 3 29 29 H 1.08995 * 109.47148 * 40.29210 * 5 4 3 30 30 H 1.08998 * 109.47456 * 184.89885 * 6 5 4 31 31 H 1.09001 * 109.47180 * 304.89625 * 6 5 4 32 32 H 1.08996 * 109.47637 * 64.89149 * 6 5 4 33 33 H 1.09003 * 109.47145 * 59.99744 * 13 11 10 34 34 H 1.09004 * 109.47268 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47349 * 299.99961 * 13 11 10 36 36 H 1.08997 * 109.47046 * 295.00184 * 14 11 10 37 37 H 1.09003 * 109.46845 * 54.99997 * 14 11 10 38 38 H 0.96997 * 120.00353 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.47190 * 273.63173 * 24 23 7 40 40 H 1.09007 * 109.47742 * 33.63384 * 24 23 7 41 41 H 1.09010 * 109.47238 * 153.63341 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -1.0180 -0.9381 5 6 2.9067 -2.3708 -0.4134 6 6 2.9583 -3.3792 -1.5629 7 6 4.4760 -0.8197 -1.2312 8 7 5.4827 -1.5486 -0.8104 9 7 6.5856 -1.0793 -1.2745 10 6 6.3500 -0.0314 -2.0122 11 6 7.3774 0.8026 -2.7331 12 1 6.8789 1.6116 -3.2673 13 6 8.3598 1.3910 -1.7184 14 6 8.1380 -0.0742 -3.7300 15 6 9.0790 0.7827 -4.5368 16 1 9.1294 1.8464 -4.3569 17 6 9.8751 0.2090 -5.5053 18 7 10.6968 0.9567 -6.2091 19 14 9.7876 -1.6308 -5.8170 20 1 8.7582 -1.9093 -6.8504 21 1 11.1086 -2.1161 -6.2908 22 1 9.4263 -2.3295 -4.5574 23 7 4.9982 0.1738 -2.0073 24 6 4.2628 1.2387 -2.6939 25 1 -1.0498 -0.0001 -0.0004 26 1 3.0095 -0.2239 1.0028 27 1 3.0090 0.9817 -0.3068 28 1 3.6785 -2.6128 0.3171 29 1 1.9279 -2.4140 0.0642 30 1 2.7024 -4.3704 -1.1885 31 1 2.2460 -3.0873 -2.3346 32 1 3.9632 -3.3984 -1.9846 33 1 8.8583 0.5821 -1.1842 34 1 9.1027 1.9946 -2.2398 35 1 7.8180 2.0157 -1.0082 36 1 8.7079 -0.8293 -3.1886 37 1 7.4291 -0.5637 -4.3979 38 1 11.2571 0.5530 -6.8902 39 1 3.9314 0.8812 -3.6688 40 1 3.3960 1.5244 -2.0978 41 1 4.9137 2.1031 -2.8259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341754162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:11 Heat of formation + Delta-G solvation = 139.910533 kcal Electronic energy + Delta-G solvation = -21526.926146 eV Core-core repulsion = 18445.386194 eV Total energy + Delta-G solvation = -3081.539952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.77243 -38.33665 -35.49891 -34.60285 -33.52744 -32.22310 -30.93548 -29.10925 -27.70251 -27.39285 -25.98985 -24.00830 -23.37990 -21.58947 -20.55914 -19.02749 -18.64111 -17.34148 -16.89432 -16.36482 -15.90122 -15.28707 -15.06423 -14.29718 -14.05515 -13.91589 -13.87288 -13.46469 -13.22051 -12.78240 -12.56365 -12.16177 -12.09503 -11.99000 -11.41311 -11.27516 -11.20356 -11.05293 -10.96517 -10.77283 -10.56685 -10.41021 -10.12068 -10.05684 -9.91137 -9.73138 -9.39797 -9.18055 -8.54658 -8.15775 -6.06254 -4.04920 1.85321 2.19558 2.48482 2.63417 3.17216 3.33421 3.41629 3.50619 3.67297 4.00238 4.46799 4.60732 4.68331 4.82005 4.87854 4.99874 5.13875 5.15177 5.27549 5.34451 5.37235 5.42673 5.47442 5.59077 5.76564 5.84235 5.92847 5.99889 6.09026 6.16899 6.20356 6.50234 6.61503 6.68479 6.73083 6.98356 7.17228 7.23554 7.29361 7.40031 7.74337 8.47633 8.95955 9.07188 9.56345 11.06309 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.004335 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.407158 B = 6457.736535 C = 6881.282063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.183 4.183 3 C 0.165 3.835 4 N -0.452 5.452 5 C 0.064 3.936 6 C -0.145 4.145 7 C 0.328 3.672 8 N -0.314 5.314 9 N -0.285 5.285 10 C 0.212 3.788 11 C 0.008 3.992 12 H 0.079 0.921 13 C -0.127 4.127 14 C 0.002 3.998 15 C -0.519 4.519 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.901 5.901 19 Si 0.872 3.128 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.261 1.261 23 N -0.480 5.480 24 C 0.078 3.922 25 H 0.220 0.780 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.009 0.991 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -0.529 11.535 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.039 3.961 4 N -0.177 5.177 5 C -0.063 4.063 6 C -0.203 4.203 7 C -0.028 4.028 8 N -0.159 5.159 9 N -0.123 5.123 10 C -0.055 4.055 11 C -0.014 4.014 12 H 0.097 0.903 13 C -0.185 4.185 14 C -0.037 4.037 15 C -0.557 4.557 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.540 5.540 19 Si 0.699 3.301 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.185 1.185 23 N -0.174 5.174 24 C -0.065 4.065 25 H 0.237 0.763 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.219 -1.586 11.680 22.546 hybrid contribution -0.707 0.015 -0.481 0.856 sum -19.926 -1.572 11.199 22.912 Atomic orbital electron populations 1.24901 0.95782 0.99366 0.99995 1.22498 0.93673 1.01336 1.00864 1.19041 0.85656 0.95869 0.95511 1.58660 1.09374 1.05477 1.44159 1.22129 1.01690 0.84613 0.97819 1.21711 1.02924 0.97516 0.98122 1.22215 0.91157 0.91527 0.97867 1.74518 0.94205 1.25021 1.22130 1.74024 1.17797 1.08266 1.12234 1.25631 0.81857 0.97574 1.00440 1.19778 0.90954 0.95486 0.95137 0.90313 1.21693 0.98746 1.00749 0.97342 1.19590 0.95166 0.95636 0.93291 1.21016 1.20944 0.95906 1.17814 0.90550 1.24934 0.94823 0.97780 0.95468 1.69892 1.25060 1.35667 1.23383 0.86878 0.77393 0.86499 0.79286 1.20436 1.21270 1.18532 1.46175 1.07961 1.24468 1.38794 1.22057 0.97022 0.89351 0.98072 0.76318 0.90753 0.88519 0.91441 0.90087 0.91771 0.92292 0.92032 0.92073 0.90117 0.94759 0.94993 0.97234 0.92668 0.89919 0.89828 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 19.25 29.55 0.57 -0.85 16 2 C -0.18 -1.73 12.55 -37.12 -0.47 -2.20 16 3 C 0.17 1.68 5.22 -6.61 -0.03 1.64 16 4 N -0.45 -5.65 4.40 -177.85 -0.78 -6.43 16 5 C 0.06 0.74 5.30 -3.83 -0.02 0.72 16 6 C -0.15 -1.70 9.95 37.16 0.37 -1.33 16 7 C 0.33 5.15 6.31 -318.86 -2.01 3.14 16 8 N -0.31 -5.88 10.69 30.32 0.32 -5.56 16 9 N -0.28 -5.90 12.18 32.99 0.40 -5.50 16 10 C 0.21 3.98 6.58 -154.02 -1.01 2.97 16 11 C 0.01 0.15 2.70 -91.77 -0.25 -0.10 16 12 H 0.08 1.40 6.86 -51.93 -0.36 1.05 16 13 C -0.13 -2.32 8.98 37.16 0.33 -1.98 16 14 C 0.00 0.04 3.50 -27.88 -0.10 -0.06 16 15 C -0.52 -14.15 8.96 -34.44 -0.31 -14.46 16 16 H 0.08 2.17 7.30 -52.49 -0.38 1.79 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 19 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 23 N -0.48 -7.45 3.21 -121.45 -0.39 -7.84 16 24 C 0.08 0.86 10.85 59.85 0.65 1.51 16 25 H 0.22 0.93 7.80 -54.10 -0.42 0.51 16 26 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 27 H 0.10 0.91 6.16 -51.93 -0.32 0.59 16 28 H 0.07 0.85 7.31 -51.93 -0.38 0.47 16 29 H 0.08 0.78 7.11 -51.93 -0.37 0.41 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.90 7.57 -51.93 -0.39 0.51 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.55 6.95 -51.93 -0.36 1.19 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 37 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.73 6.27 -51.93 -0.33 0.40 16 41 H 0.09 0.94 7.08 -51.92 -0.37 0.57 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -33.13 340.54 -7.73 -40.86 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.14 Total: -2.48 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.38 Total: -9.06 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.33 Total: -51.78 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.13 -7.73 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341754162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.767 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds