Wall clock time and date at job start Mon Mar 30 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47258 * 42.63641 * 3 2 1 5 5 C 1.46901 * 110.99968 * 288.28066 * 4 3 2 6 6 C 1.52997 * 109.47186 * 160.29185 * 5 4 3 7 7 C 1.38583 * 111.00336 * 164.32435 * 4 3 2 8 8 N 1.31220 * 126.47109 * 107.31120 * 7 4 3 9 9 N 1.28527 * 109.85493 * 180.02562 * 8 7 4 10 10 C 1.30295 * 110.05798 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.34790 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47301 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47159 * 300.02186 * 11 10 9 14 14 C 1.53007 * 109.47335 * 60.02023 * 11 10 9 15 15 C 1.50693 * 109.47063 * 175.00057 * 14 11 10 16 16 H 1.08000 * 120.00164 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00215 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00461 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99690 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46710 * 90.00265 * 19 17 15 21 21 H 1.48497 * 109.47267 * 210.00426 * 19 17 15 22 22 H 1.48499 * 109.46916 * 330.00244 * 19 17 15 23 23 N 1.36456 * 126.47275 * 287.60228 * 7 4 3 24 24 C 1.46497 * 127.13547 * 0.02562 * 23 7 4 25 25 H 4.40883 * 5.52168 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47331 * 282.63220 * 3 2 1 27 27 H 1.09005 * 109.47340 * 162.63333 * 3 2 1 28 28 H 1.08996 * 109.46729 * 280.28657 * 5 4 3 29 29 H 1.08995 * 109.47148 * 40.29210 * 5 4 3 30 30 H 1.08998 * 109.47456 * 184.89885 * 6 5 4 31 31 H 1.09001 * 109.47180 * 304.89625 * 6 5 4 32 32 H 1.08996 * 109.47637 * 64.89149 * 6 5 4 33 33 H 1.09003 * 109.47145 * 59.99744 * 13 11 10 34 34 H 1.09004 * 109.47268 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47349 * 299.99961 * 13 11 10 36 36 H 1.08997 * 109.47046 * 295.00184 * 14 11 10 37 37 H 1.09003 * 109.46845 * 54.99997 * 14 11 10 38 38 H 0.96997 * 120.00353 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.47190 * 273.63173 * 24 23 7 40 40 H 1.09007 * 109.47742 * 33.63384 * 24 23 7 41 41 H 1.09010 * 109.47238 * 153.63341 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -1.0180 -0.9381 5 6 2.9067 -2.3708 -0.4134 6 6 2.9583 -3.3792 -1.5629 7 6 4.4760 -0.8197 -1.2312 8 7 5.4827 -1.5486 -0.8104 9 7 6.5856 -1.0793 -1.2745 10 6 6.3500 -0.0314 -2.0122 11 6 7.3774 0.8026 -2.7331 12 1 6.8789 1.6116 -3.2673 13 6 8.3598 1.3910 -1.7184 14 6 8.1380 -0.0742 -3.7300 15 6 9.0790 0.7827 -4.5368 16 1 9.1294 1.8464 -4.3569 17 6 9.8751 0.2090 -5.5053 18 7 10.6968 0.9567 -6.2091 19 14 9.7876 -1.6308 -5.8170 20 1 8.7582 -1.9093 -6.8504 21 1 11.1086 -2.1161 -6.2908 22 1 9.4263 -2.3295 -4.5574 23 7 4.9982 0.1738 -2.0073 24 6 4.2628 1.2387 -2.6939 25 1 -1.0498 -0.0001 -0.0004 26 1 3.0095 -0.2239 1.0028 27 1 3.0090 0.9817 -0.3068 28 1 3.6785 -2.6128 0.3171 29 1 1.9279 -2.4140 0.0642 30 1 2.7024 -4.3704 -1.1885 31 1 2.2460 -3.0873 -2.3346 32 1 3.9632 -3.3984 -1.9846 33 1 8.8583 0.5821 -1.1842 34 1 9.1027 1.9946 -2.2398 35 1 7.8180 2.0157 -1.0082 36 1 8.7079 -0.8293 -3.1886 37 1 7.4291 -0.5637 -4.3979 38 1 11.2571 0.5530 -6.8902 39 1 3.9314 0.8812 -3.6688 40 1 3.3960 1.5244 -2.0978 41 1 4.9137 2.1031 -2.8259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341754162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:10 Heat of formation + Delta-G solvation = 121.039991 kcal Electronic energy + Delta-G solvation = -21527.744435 eV Core-core repulsion = 18445.386194 eV Total energy + Delta-G solvation = -3082.358241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.07220 -39.32869 -37.11252 -35.87821 -34.38633 -34.14208 -31.90169 -30.48625 -29.32463 -28.56225 -26.92285 -25.67070 -24.48750 -23.25250 -21.73385 -20.50032 -19.30672 -19.08642 -18.29932 -17.46022 -17.11784 -16.44340 -16.16812 -16.00046 -15.43224 -15.21075 -14.87837 -14.68804 -14.57912 -14.24768 -13.89349 -13.57508 -13.16703 -13.05966 -12.94833 -12.92600 -12.63874 -12.41924 -12.25884 -12.02682 -11.86548 -11.75684 -11.63389 -11.45787 -11.29798 -11.16608 -11.08226 -10.75527 -10.63589 -9.40427 -8.28090 -6.29384 0.68002 1.10963 1.31364 1.36121 1.48426 1.68088 1.86249 1.90718 2.35455 2.75249 3.07613 3.32751 3.41722 3.70817 3.80454 3.89276 4.05575 4.15478 4.23855 4.30121 4.36619 4.41813 4.47765 4.51911 4.63076 4.67036 4.84057 4.90555 5.01455 5.04099 5.05299 5.11687 5.20841 5.23027 5.35300 5.43737 5.54521 5.57612 5.68960 6.13246 6.27961 6.65128 6.76571 7.34684 7.72725 8.87277 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.004335 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.407158 B = 6457.736535 C = 6881.282063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.225 4.225 3 C 0.168 3.832 4 N -0.450 5.450 5 C 0.064 3.936 6 C -0.140 4.140 7 C 0.348 3.652 8 N -0.347 5.347 9 N -0.321 5.321 10 C 0.200 3.800 11 C 0.015 3.985 12 H 0.097 0.903 13 C -0.120 4.120 14 C 0.009 3.991 15 C -0.513 4.513 16 H 0.058 0.942 17 C 0.019 3.981 18 N -0.942 5.942 19 Si 0.928 3.072 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.263 1.263 23 N -0.476 5.476 24 C 0.068 3.932 25 H 0.252 0.748 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.004 0.996 38 H 0.266 0.734 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.958 -0.515 12.258 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.225 4.225 3 C 0.042 3.958 4 N -0.175 5.175 5 C -0.062 4.062 6 C -0.198 4.198 7 C -0.009 4.009 8 N -0.191 5.191 9 N -0.160 5.160 10 C -0.069 4.069 11 C -0.006 4.006 12 H 0.115 0.885 13 C -0.178 4.178 14 C -0.030 4.030 15 C -0.551 4.551 16 H 0.076 0.924 17 C -0.179 4.179 18 N -0.583 5.583 19 Si 0.753 3.247 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.187 1.187 23 N -0.170 5.170 24 C -0.073 4.073 25 H 0.268 0.732 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.022 0.978 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.361 -1.561 12.408 25.621 hybrid contribution 0.090 0.055 -0.657 0.665 sum -22.272 -1.506 11.751 25.227 Atomic orbital electron populations 1.25725 0.96512 0.97116 0.97779 1.22478 0.93777 1.03393 1.02888 1.19017 0.86589 0.95248 0.94911 1.58853 1.06916 1.06624 1.45106 1.22190 1.02509 0.84069 0.97416 1.21677 1.00819 0.98969 0.98289 1.22522 0.91907 0.90197 0.96301 1.74435 0.94527 1.26482 1.23690 1.73923 1.19384 1.09354 1.13338 1.25221 0.83115 0.97534 1.00981 1.19554 0.91233 0.95156 0.94628 0.88496 1.21593 0.98413 1.00389 0.97384 1.19419 0.94586 0.95338 0.93627 1.21280 1.20868 0.95531 1.17445 0.92426 1.25674 0.94870 1.01668 0.95713 1.70000 1.26366 1.37418 1.24493 0.85989 0.77742 0.81842 0.79106 1.19477 1.20658 1.18735 1.46301 1.07030 1.25116 1.38510 1.22430 0.97849 0.88526 0.98475 0.73175 0.90567 0.87902 0.92762 0.87578 0.89712 0.91904 0.95477 0.93455 0.91567 0.91757 0.96755 0.97786 0.92492 0.89389 0.87163 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 19.25 74.32 1.43 -0.35 16 2 C -0.22 -3.56 12.55 31.12 0.39 -3.17 16 3 C 0.17 3.02 5.22 84.50 0.44 3.46 16 4 N -0.45 -10.43 4.40 -716.58 -3.15 -13.58 16 5 C 0.06 1.38 5.30 86.30 0.46 1.83 16 6 C -0.14 -3.12 9.95 71.98 0.72 -2.40 16 7 C 0.35 10.56 6.31 260.11 1.64 12.20 16 8 N -0.35 -13.03 10.69 -58.00 -0.62 -13.65 16 9 N -0.32 -13.43 12.18 -49.54 -0.60 -14.04 16 10 C 0.20 7.41 6.58 137.64 0.91 8.32 16 11 C 0.02 0.58 2.70 -11.54 -0.03 0.55 16 12 H 0.10 3.32 6.86 -2.39 -0.02 3.31 16 13 C -0.12 -4.33 8.98 71.98 0.65 -3.68 16 14 C 0.01 0.42 3.50 29.85 0.10 0.52 16 15 C -0.51 -28.36 8.96 25.60 0.23 -28.13 16 16 H 0.06 3.34 7.30 -2.91 -0.02 3.32 16 17 C 0.02 1.07 5.47 84.66 0.46 1.53 16 18 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 19 Si 0.93 45.79 27.47 68.60 1.88 47.68 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.26 -12.96 6.54 99.48 0.65 -12.30 16 23 N -0.48 -14.09 3.21 -538.16 -1.73 -15.81 16 24 C 0.07 1.33 10.85 127.77 1.39 2.72 16 25 H 0.25 0.89 7.80 -4.43 -0.03 0.85 16 26 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 27 H 0.10 1.67 6.16 -2.38 -0.01 1.66 16 28 H 0.05 1.33 7.31 -2.39 -0.02 1.31 16 29 H 0.11 1.75 7.11 -2.39 -0.02 1.73 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.03 0.78 7.57 -2.39 -0.02 0.76 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.56 6.95 -2.39 -0.02 2.54 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.90 16 36 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 37 H 0.00 0.19 7.57 -2.39 -0.02 0.17 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.11 1.56 6.27 -2.38 -0.01 1.54 16 41 H 0.11 1.83 7.08 -2.38 -0.02 1.82 16 Total: -1.00 -72.73 340.54 5.82 -66.92 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.95 Total: 6.53 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 8.78 Total: -6.59 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -5.80 Total: -114.54 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.68 kcal Total: -72.73 5.82 -66.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341754162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.957 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds