Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47545 * 307.56505 * 3 2 1 5 5 C 1.53004 * 109.47076 * 187.56529 * 3 2 1 6 6 N 1.46900 * 109.46843 * 67.56635 * 3 2 1 7 7 C 1.46899 * 111.00270 * 303.95052 * 6 3 2 8 8 C 1.38580 * 110.99648 * 180.02562 * 6 3 2 9 9 N 1.31214 * 126.47705 * 59.57038 * 8 6 3 10 10 N 1.28529 * 109.86346 * 179.82502 * 9 8 6 11 11 C 1.30295 * 110.05413 * 0.44974 * 10 9 8 12 12 C 1.50694 * 126.35070 * 179.76434 * 11 10 9 13 13 C 1.53000 * 109.47330 * 269.95836 * 12 11 10 14 14 C 1.52998 * 109.46936 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46840 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00194 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99918 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00194 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99977 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47408 * 59.99764 * 19 17 15 21 21 H 1.48501 * 109.47383 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46941 * 300.00105 * 19 17 15 23 23 N 1.36458 * 126.47299 * 239.88259 * 8 6 3 24 24 C 1.46503 * 127.13163 * 0.02562 * 23 8 6 25 25 H 4.18745 * 15.04022 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.46914 * 300.00362 * 5 3 2 27 27 H 1.09004 * 109.46742 * 60.00192 * 5 3 2 28 28 H 1.08991 * 109.47004 * 180.02562 * 5 3 2 29 29 H 1.08993 * 109.46789 * 66.25570 * 7 6 3 30 30 H 1.09000 * 109.47097 * 186.26193 * 7 6 3 31 31 H 1.09002 * 109.47163 * 306.25909 * 7 6 3 32 32 H 1.09002 * 109.47316 * 29.96450 * 12 11 10 33 33 H 1.09007 * 109.47428 * 149.95689 * 12 11 10 34 34 H 1.08997 * 109.47041 * 299.99945 * 13 12 11 35 35 H 1.08997 * 109.46695 * 60.00016 * 13 12 11 36 36 H 1.09004 * 109.47608 * 299.99982 * 14 13 12 37 37 H 1.08999 * 109.47797 * 60.00208 * 14 13 12 38 38 H 0.96999 * 119.99765 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.46894 * 95.92707 * 24 23 8 40 40 H 1.09007 * 109.46765 * 215.91959 * 24 23 8 41 41 H 1.08991 * 109.47358 * 335.92102 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.6257 0.8146 5 6 3.1554 1.4309 0.1899 6 7 3.1358 -0.5277 -1.2802 7 6 2.5898 -1.8663 -1.5409 8 6 4.5211 -0.5417 -1.3141 9 7 5.3151 -1.1867 -0.4924 10 7 6.5413 -0.9802 -0.8176 11 6 6.6022 -0.1900 -1.8518 12 6 7.8560 0.2946 -2.5330 13 6 8.3137 1.6041 -1.8874 14 6 9.5870 2.0956 -2.5787 15 6 10.0382 3.3851 -1.9423 16 1 9.4730 3.8115 -1.1268 17 6 11.1725 4.0204 -2.4013 18 7 11.8605 3.5014 -3.3948 19 14 11.7313 5.6190 -1.6130 20 1 12.0064 5.3907 -0.1717 21 1 12.9673 6.0962 -2.2838 22 1 10.6641 6.6416 -1.7573 23 7 5.3174 0.1175 -2.2049 24 6 4.8854 0.9770 -3.3098 25 1 -1.0500 -0.0001 0.0009 26 1 2.7917 2.0572 -0.6246 27 1 2.7918 1.8228 1.1399 28 1 4.2453 1.4314 0.1895 29 1 1.5121 -1.7966 -1.6881 30 1 3.0531 -2.2795 -2.4368 31 1 2.7992 -2.5159 -0.6910 32 1 8.6397 -0.4556 -2.4281 33 1 7.6531 0.4625 -3.5908 34 1 7.5300 2.3543 -1.9924 35 1 8.5165 1.4361 -0.8297 36 1 10.3706 1.3453 -2.4733 37 1 9.3846 2.2635 -3.6365 38 1 12.6587 3.9483 -3.7174 39 1 4.9034 2.0184 -2.9885 40 1 5.5593 0.8463 -4.1566 41 1 3.8723 0.7057 -3.6065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350632648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = 132.150923 kcal Electronic energy + Delta-G solvation = -21043.673772 eV Core-core repulsion = 17961.797337 eV Total energy + Delta-G solvation = -3081.876434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.91519 -38.53491 -35.25992 -34.51913 -33.50657 -32.35139 -30.86092 -29.78721 -27.70041 -26.99655 -25.59217 -24.21759 -23.75117 -20.94503 -20.74926 -20.10864 -18.34946 -17.36062 -16.62980 -16.31575 -15.98879 -15.27944 -15.21498 -14.52675 -14.16772 -13.97100 -13.67034 -13.38960 -13.04191 -12.70513 -12.61737 -12.33883 -12.00861 -11.98439 -11.91996 -11.56880 -11.42793 -11.00135 -10.85046 -10.82239 -10.64090 -10.57762 -10.41361 -10.03408 -9.77994 -9.51468 -9.19407 -9.03782 -8.71614 -8.36882 -6.02305 -4.04680 1.73854 2.07372 2.52540 2.62637 2.96038 3.32513 3.37016 3.39791 3.62877 3.96532 4.43697 4.55345 4.71139 4.72015 4.90248 4.99409 5.09852 5.11164 5.24655 5.32936 5.33917 5.42381 5.43054 5.53942 5.58541 5.74602 5.82725 5.87311 5.92418 6.03266 6.10707 6.35090 6.59752 6.59988 6.73757 7.01489 7.17575 7.28289 7.62733 7.75983 7.96786 8.39136 8.85315 9.01658 9.59572 11.08945 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.003408 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.117390 B = 8213.818559 C = 8706.288286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.176 4.176 3 C 0.202 3.798 4 H 0.083 0.917 5 C -0.142 4.142 6 N -0.460 5.460 7 C 0.036 3.964 8 C 0.327 3.673 9 N -0.310 5.310 10 N -0.291 5.291 11 C 0.208 3.792 12 C -0.037 4.037 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.464 5.464 24 C 0.079 3.921 25 H 0.220 0.780 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.821 -7.331 1.004 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.095 3.905 4 H 0.101 0.899 5 C -0.199 4.199 6 N -0.186 5.186 7 C -0.111 4.111 8 C -0.030 4.030 9 N -0.154 5.154 10 N -0.131 5.131 11 C -0.059 4.059 12 C -0.076 4.076 13 C -0.141 4.141 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.157 5.157 24 C -0.064 4.064 25 H 0.237 0.763 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.380 -7.862 1.629 22.838 hybrid contribution -0.110 1.286 -0.189 1.304 sum -21.490 -6.577 1.440 22.520 Atomic orbital electron populations 1.24888 0.95717 1.00547 0.99340 1.22503 0.93500 1.00564 1.01045 1.18572 0.84592 0.97882 0.89406 0.89929 1.21811 1.01611 0.93695 1.02812 1.58662 1.00128 1.26088 1.33720 1.22414 1.00548 0.86393 1.01749 1.21969 0.90100 0.98447 0.92446 1.74528 0.97199 1.21235 1.22442 1.74077 1.11415 1.15860 1.11760 1.25385 0.86165 0.97897 0.96453 1.20390 0.88834 1.00255 0.98156 1.21646 1.00011 0.92213 1.00210 1.19093 0.90737 0.96035 0.95518 1.21181 1.09754 1.07378 1.17675 0.92782 1.25005 0.96565 0.97710 0.95064 1.69946 1.17496 1.39593 1.26427 0.86665 0.78002 0.83777 0.79611 1.20180 1.21266 1.20288 1.46230 1.06598 1.37240 1.25601 1.22057 1.02323 0.94361 0.87699 0.76310 0.91341 0.90933 0.91734 0.90030 0.91064 0.93441 0.88387 0.90299 0.93537 0.92435 0.96151 0.96490 0.92905 0.89870 0.89161 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.18 -1.74 11.26 -37.12 -0.42 -2.16 16 3 C 0.20 2.26 2.45 -70.50 -0.17 2.09 16 4 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 5 C -0.14 -1.57 9.02 37.16 0.34 -1.23 16 6 N -0.46 -5.40 4.61 -177.98 -0.82 -6.22 16 7 C 0.04 0.36 9.10 60.06 0.55 0.91 16 8 C 0.33 4.70 4.99 -318.87 -1.59 3.11 16 9 N -0.31 -5.36 12.13 30.31 0.37 -4.99 16 10 N -0.29 -5.43 12.18 32.99 0.40 -5.03 16 11 C 0.21 3.43 7.32 -154.02 -1.13 2.31 16 12 C -0.04 -0.60 5.59 -27.89 -0.16 -0.75 16 13 C -0.10 -2.03 5.14 -26.73 -0.14 -2.16 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 N -0.46 -6.50 3.21 -121.46 -0.39 -6.89 16 24 C 0.08 0.80 11.00 59.85 0.66 1.46 16 25 H 0.22 0.93 7.80 -54.09 -0.42 0.50 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.86 7.22 -51.93 -0.38 0.48 16 29 H 0.08 0.68 7.24 -51.93 -0.38 0.31 16 30 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.13 7.40 -51.92 -0.38 0.75 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.81 7.44 -51.92 -0.39 0.42 16 41 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -32.70 351.59 -8.02 -40.71 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.55 Total: -3.41 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.04 Total: -10.20 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.30 Total: -48.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.70 -8.02 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350632648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.865 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds