Wall clock time and date at job start Mon Mar 30 2020 01:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47116 * 269.99375 * 3 2 1 5 5 H 1.48496 * 109.47318 * 29.99663 * 3 2 1 6 6 H 1.48507 * 109.46818 * 149.99595 * 3 2 1 7 7 C 1.37874 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.53118 * 109.52406 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.27879 * 177.55882 * 10 9 7 12 12 N 1.46846 * 109.52066 * 300.82365 * 11 10 9 13 13 C 1.38338 * 110.99690 * 185.83952 * 12 11 10 14 14 N 1.31573 * 126.07461 * 342.10868 * 13 12 11 15 15 C 1.33369 * 109.69572 * 179.97438 * 14 13 12 16 16 N 1.30581 * 109.11419 * 0.02562 * 15 14 13 17 17 N 1.34988 * 126.07377 * 162.08763 * 13 12 11 18 18 C 1.46494 * 126.82806 * 0.02562 * 17 13 12 19 19 C 1.53006 * 109.47243 * 269.07168 * 18 17 13 20 20 C 1.52999 * 117.49638 * 244.37794 * 19 18 17 21 21 C 1.52995 * 117.50292 * 175.71475 * 19 18 17 22 22 C 1.46848 * 111.20051 * 61.74032 * 12 11 10 23 23 C 1.53029 * 109.52415 * 298.25575 * 22 12 11 24 24 H 0.97009 * 119.99814 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.57696 * 59.83998 * 9 7 2 26 26 H 1.09006 * 109.50029 * 57.62046 * 10 9 7 27 27 H 1.08992 * 109.50494 * 297.50225 * 10 9 7 28 28 H 1.09000 * 109.46124 * 180.80765 * 11 10 9 29 29 H 1.08996 * 109.46058 * 60.83815 * 11 10 9 30 30 H 1.07994 * 125.44279 * 179.73513 * 15 14 13 31 31 H 1.09004 * 109.47308 * 29.06556 * 18 17 13 32 32 H 1.08997 * 109.47503 * 149.07136 * 18 17 13 33 33 H 1.08997 * 115.54708 * 30.03953 * 19 18 17 34 34 H 1.09007 * 117.50035 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50162 * 145.02065 * 20 19 18 36 36 H 1.09001 * 117.49780 * 214.97611 * 21 19 18 37 37 H 1.09000 * 117.49512 * 359.97210 * 21 19 18 38 38 H 1.09012 * 109.45943 * 58.27287 * 22 12 11 39 39 H 1.09000 * 109.46445 * 178.23492 * 22 12 11 40 40 H 1.08990 * 109.50755 * 299.23585 * 23 22 12 41 41 H 1.09003 * 109.50418 * 179.11502 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2450 -3.6638 0.0005 11 6 1.4751 -4.9851 0.0621 12 7 0.6543 -5.0185 1.2792 13 6 0.0458 -6.2513 1.4330 14 7 -0.1176 -7.1573 0.4931 15 6 -0.7427 -8.2216 0.9983 16 7 -0.9880 -8.0126 2.2638 17 7 -0.4856 -6.7386 2.5743 18 6 -0.5298 -6.0708 3.8774 19 6 0.7169 -6.4419 4.6832 20 6 0.5130 -7.2405 5.9722 21 6 0.9084 -5.7633 6.0410 22 6 -0.3394 -3.9374 1.2795 23 6 0.3762 -2.5849 1.2543 24 1 -0.4850 0.8401 -0.0004 25 1 0.6219 -2.5576 -0.8877 26 1 2.8998 -3.5834 0.8683 27 1 2.8421 -3.6327 -0.9107 28 1 2.1804 -5.8160 0.0767 29 1 0.8309 -5.0711 -0.8129 30 1 -1.0083 -9.1118 0.4477 31 1 -0.5599 -4.9910 3.7316 32 1 -1.4205 -6.3894 4.4190 33 1 1.6103 -6.6537 4.0959 34 1 -0.5093 -7.5012 6.2464 35 1 1.2726 -7.9774 6.2333 36 1 1.9280 -5.5290 6.3472 37 1 0.1465 -5.0521 6.3601 38 1 -0.9752 -4.0283 0.3987 39 1 -0.9521 -4.0074 2.1782 40 1 1.0015 -2.4875 2.1417 41 1 -0.3618 -1.7829 1.2386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515624417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:40 Heat of formation + Delta-G solvation = 118.647527 kcal Electronic energy + Delta-G solvation = -21874.685761 eV Core-core repulsion = 18792.223776 eV Total energy + Delta-G solvation = -3082.461986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.91175 -38.30864 -37.70655 -34.14959 -33.35244 -31.63067 -30.13080 -29.50863 -27.36965 -25.71278 -22.79249 -22.57383 -22.49752 -21.58685 -20.98943 -20.17612 -18.68498 -17.34059 -16.43273 -15.98190 -15.73289 -15.32692 -14.54398 -14.48094 -14.15168 -13.89586 -13.62561 -13.12639 -12.87225 -12.61362 -12.56148 -11.92999 -11.78159 -11.65311 -11.60986 -11.09079 -10.94603 -10.68932 -10.56244 -10.35856 -10.18808 -10.15419 -9.92821 -9.72320 -9.54483 -9.43786 -9.07435 -8.84173 -8.36988 -8.17717 -6.03881 -4.09058 1.80696 2.30377 3.12115 3.28465 3.35667 3.38801 3.61811 3.94072 4.40938 4.49664 4.60734 4.71728 4.82078 4.92139 5.09762 5.25673 5.30254 5.42245 5.48862 5.58350 5.71842 5.72495 5.93729 5.94416 5.99740 6.02109 6.19472 6.27040 6.40583 6.44621 6.54418 6.68321 6.72724 6.88410 7.02862 7.24753 7.31436 7.58120 7.69127 7.92756 8.02718 8.36282 8.39617 8.94475 9.56085 11.02704 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.004810 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.699286 B = 5820.048837 C = 6608.509113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.109 4.109 11 C 0.078 3.922 12 N -0.458 5.458 13 C 0.463 3.537 14 N -0.574 5.574 15 C 0.205 3.795 16 N -0.328 5.328 17 N -0.376 5.376 18 C 0.165 3.835 19 C -0.164 4.164 20 C -0.176 4.176 21 C -0.167 4.167 22 C 0.062 3.938 23 C -0.104 4.104 24 H 0.260 0.740 25 H 0.026 0.974 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.212 0.788 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -11.957 8.325 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.027 3.973 10 C -0.147 4.147 11 C -0.049 4.049 12 N -0.183 5.183 13 C 0.099 3.901 14 N -0.307 5.307 15 C -0.100 4.100 16 N -0.157 5.157 17 N -0.169 5.169 18 C 0.043 3.957 19 C -0.184 4.184 20 C -0.213 4.213 21 C -0.204 4.204 22 C -0.063 4.063 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.229 0.771 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.348 -12.156 8.926 15.141 hybrid contribution 0.076 0.859 -0.485 0.989 sum -1.272 -11.297 8.441 14.160 Atomic orbital electron populations 1.69855 1.05890 1.26465 1.50984 1.24961 0.94838 0.99063 0.95070 0.86619 0.79902 0.83531 0.78095 1.20745 1.21306 1.19926 1.21169 0.92958 0.90426 1.50262 0.92567 1.18722 0.92728 0.91961 0.93859 1.21779 0.98795 0.93112 1.01025 1.22120 0.95222 0.99735 0.87784 1.58975 1.21318 0.97187 1.40850 1.22318 0.90979 0.93633 0.83177 1.71024 1.25733 1.03964 1.30017 1.25711 0.96078 0.98180 0.89982 1.77944 1.24369 0.96309 1.17086 1.50048 1.45424 1.12469 1.08911 1.21318 0.97644 0.97134 0.79628 1.22535 0.99623 1.05866 0.90343 1.23068 1.02722 0.94551 1.00939 1.22973 1.03232 0.95439 0.98784 1.22516 0.92306 0.91654 0.99873 1.21759 1.00545 0.91780 1.00109 0.92999 0.95625 0.92279 0.92134 0.91466 0.93168 0.77136 0.87693 0.88996 0.87259 0.88629 0.88854 0.88287 0.88338 0.93943 0.92379 0.93259 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 11.37 55.43 0.63 -23.77 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.35 8.56 -34.44 -0.29 -13.64 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.08 2.16 -91.65 -0.20 0.88 16 10 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 11 C 0.08 1.43 4.86 -3.83 -0.02 1.41 16 12 N -0.46 -8.20 4.60 -174.97 -0.80 -9.00 16 13 C 0.46 8.06 6.83 -320.79 -2.19 5.87 16 14 N -0.57 -10.02 10.41 -15.21 -0.16 -10.18 16 15 C 0.20 3.05 13.02 -91.81 -1.20 1.85 16 16 N -0.33 -5.16 12.68 29.29 0.37 -4.79 16 17 N -0.38 -5.88 3.65 -61.93 -0.23 -6.11 16 18 C 0.17 2.09 6.63 -4.04 -0.03 2.07 16 19 C -0.16 -1.93 6.01 -90.62 -0.54 -2.47 16 20 C -0.18 -1.70 10.18 -26.69 -0.27 -1.97 16 21 C -0.17 -1.59 10.25 -26.69 -0.27 -1.86 16 22 C 0.06 1.16 5.21 -3.84 -0.02 1.14 16 23 C -0.10 -2.26 5.12 -26.65 -0.14 -2.39 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.21 2.22 8.06 -52.49 -0.42 1.79 16 31 H 0.11 1.33 6.10 -51.93 -0.32 1.02 16 32 H 0.09 1.02 7.88 -51.93 -0.41 0.62 16 33 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.10 0.85 8.03 -51.93 -0.42 0.44 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.06 0.97 6.20 -51.93 -0.32 0.65 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.10 2.47 6.17 -51.93 -0.32 2.15 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -28.66 331.00 -12.02 -40.68 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.40 Total: 2.50 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -5.41 Total: -9.90 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.19 Total: -53.85 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.66 -12.02 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515624417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.328 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds