Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47116 * 269.99375 * 3 2 1 5 5 H 1.48496 * 109.47318 * 29.99663 * 3 2 1 6 6 H 1.48507 * 109.46818 * 149.99595 * 3 2 1 7 7 C 1.37874 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.53118 * 109.52406 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.27879 * 177.55882 * 10 9 7 12 12 N 1.46846 * 109.52066 * 300.82365 * 11 10 9 13 13 C 1.38338 * 110.99690 * 185.83952 * 12 11 10 14 14 N 1.31573 * 126.07461 * 342.10868 * 13 12 11 15 15 C 1.33369 * 109.69572 * 179.97438 * 14 13 12 16 16 N 1.30581 * 109.11419 * 0.02562 * 15 14 13 17 17 N 1.34988 * 126.07377 * 162.08763 * 13 12 11 18 18 C 1.46494 * 126.82806 * 0.02562 * 17 13 12 19 19 C 1.53006 * 109.47243 * 269.07168 * 18 17 13 20 20 C 1.52999 * 117.49638 * 244.37794 * 19 18 17 21 21 C 1.52995 * 117.50292 * 175.71475 * 19 18 17 22 22 C 1.46848 * 111.20051 * 61.74032 * 12 11 10 23 23 C 1.53029 * 109.52415 * 298.25575 * 22 12 11 24 24 H 0.97009 * 119.99814 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.57696 * 59.83998 * 9 7 2 26 26 H 1.09006 * 109.50029 * 57.62046 * 10 9 7 27 27 H 1.08992 * 109.50494 * 297.50225 * 10 9 7 28 28 H 1.09000 * 109.46124 * 180.80765 * 11 10 9 29 29 H 1.08996 * 109.46058 * 60.83815 * 11 10 9 30 30 H 1.07994 * 125.44279 * 179.73513 * 15 14 13 31 31 H 1.09004 * 109.47308 * 29.06556 * 18 17 13 32 32 H 1.08997 * 109.47503 * 149.07136 * 18 17 13 33 33 H 1.08997 * 115.54708 * 30.03953 * 19 18 17 34 34 H 1.09007 * 117.50035 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50162 * 145.02065 * 20 19 18 36 36 H 1.09001 * 117.49780 * 214.97611 * 21 19 18 37 37 H 1.09000 * 117.49512 * 359.97210 * 21 19 18 38 38 H 1.09012 * 109.45943 * 58.27287 * 22 12 11 39 39 H 1.09000 * 109.46445 * 178.23492 * 22 12 11 40 40 H 1.08990 * 109.50755 * 299.23585 * 23 22 12 41 41 H 1.09003 * 109.50418 * 179.11502 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2450 -3.6638 0.0005 11 6 1.4751 -4.9851 0.0621 12 7 0.6543 -5.0185 1.2792 13 6 0.0458 -6.2513 1.4330 14 7 -0.1176 -7.1573 0.4931 15 6 -0.7427 -8.2216 0.9983 16 7 -0.9880 -8.0126 2.2638 17 7 -0.4856 -6.7386 2.5743 18 6 -0.5298 -6.0708 3.8774 19 6 0.7169 -6.4419 4.6832 20 6 0.5130 -7.2405 5.9722 21 6 0.9084 -5.7633 6.0410 22 6 -0.3394 -3.9374 1.2795 23 6 0.3762 -2.5849 1.2543 24 1 -0.4850 0.8401 -0.0004 25 1 0.6219 -2.5576 -0.8877 26 1 2.8998 -3.5834 0.8683 27 1 2.8421 -3.6327 -0.9107 28 1 2.1804 -5.8160 0.0767 29 1 0.8309 -5.0711 -0.8129 30 1 -1.0083 -9.1118 0.4477 31 1 -0.5599 -4.9910 3.7316 32 1 -1.4205 -6.3894 4.4190 33 1 1.6103 -6.6537 4.0959 34 1 -0.5093 -7.5012 6.2464 35 1 1.2726 -7.9774 6.2333 36 1 1.9280 -5.5290 6.3472 37 1 0.1465 -5.0521 6.3601 38 1 -0.9752 -4.0283 0.3987 39 1 -0.9521 -4.0074 2.1782 40 1 1.0015 -2.4875 2.1417 41 1 -0.3618 -1.7829 1.2386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515624417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = 105.950767 kcal Electronic energy + Delta-G solvation = -21875.236334 eV Core-core repulsion = 18792.223776 eV Total energy + Delta-G solvation = -3083.012558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.16142 -39.86104 -38.56238 -35.90275 -34.50830 -33.41926 -31.70739 -30.94754 -28.54262 -27.46114 -24.36220 -24.14775 -23.27982 -22.83174 -22.18398 -21.37603 -20.37457 -18.63374 -18.31635 -17.25109 -16.95444 -16.59288 -16.29439 -15.76023 -15.21528 -15.11304 -14.95608 -14.59669 -14.46383 -14.22585 -14.16558 -13.24156 -13.19306 -12.86793 -12.84256 -12.68679 -12.39253 -12.31044 -12.12138 -11.99538 -11.55799 -11.52949 -11.11701 -11.00807 -10.97342 -10.82054 -10.71180 -10.66039 -10.38156 -9.58633 -8.06319 -6.18414 0.54318 1.12548 1.44539 1.46584 1.55628 1.88968 2.46812 2.60947 2.81320 3.21957 3.54699 3.59299 3.64796 3.89452 4.01517 4.04284 4.10301 4.13955 4.29799 4.36289 4.51791 4.58143 4.61759 4.66310 4.77118 4.90379 4.97997 4.99759 5.00389 5.14198 5.19488 5.23105 5.31305 5.32588 5.51275 5.53721 5.64774 5.71468 6.00976 6.13713 6.23551 6.40879 6.91890 7.11914 7.49720 8.98830 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.004810 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.699286 B = 5820.048837 C = 6608.509113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.098 4.098 11 C 0.089 3.911 12 N -0.455 5.455 13 C 0.446 3.554 14 N -0.595 5.595 15 C 0.204 3.796 16 N -0.335 5.335 17 N -0.372 5.372 18 C 0.161 3.839 19 C -0.183 4.183 20 C -0.165 4.165 21 C -0.156 4.156 22 C 0.076 3.924 23 C -0.091 4.091 24 H 0.260 0.740 25 H -0.007 1.007 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.250 0.750 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -12.854 9.602 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.136 4.136 11 C -0.038 4.038 12 N -0.180 5.180 13 C 0.081 3.919 14 N -0.329 5.329 15 C -0.099 4.099 16 N -0.164 5.164 17 N -0.164 5.164 18 C 0.039 3.961 19 C -0.203 4.203 20 C -0.202 4.202 21 C -0.193 4.193 22 C -0.050 4.050 23 C -0.129 4.129 24 H 0.069 0.931 25 H 0.011 0.989 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.266 0.734 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.160 -13.067 10.221 16.630 hybrid contribution -0.001 1.078 -0.881 1.392 sum -1.160 -11.989 9.340 15.242 Atomic orbital electron populations 1.69985 1.07055 1.27090 1.51561 1.25665 0.95597 1.02103 0.94854 0.85676 0.78874 0.79789 0.78017 1.20568 1.21025 1.19286 1.21515 0.93099 0.91825 1.50230 0.92797 1.18694 0.93147 0.92611 0.93200 1.21616 0.98061 0.92636 1.01306 1.21950 0.95138 0.99002 0.87706 1.58869 1.21128 0.97502 1.40481 1.22203 0.92183 0.93405 0.84085 1.70989 1.26335 1.04768 1.30796 1.26473 0.94963 0.98604 0.89856 1.77923 1.24517 0.96325 1.17618 1.50257 1.44420 1.12389 1.09295 1.21543 0.98954 0.96836 0.78724 1.22386 0.98342 1.08547 0.90980 1.23145 1.03539 0.94744 0.98728 1.23074 1.03973 0.95784 0.96508 1.22253 0.92045 0.90475 1.00239 1.21463 0.99587 0.92854 0.99005 0.93051 0.98915 0.92154 0.91660 0.90155 0.94287 0.73409 0.87983 0.87244 0.89555 0.87540 0.88373 0.87849 0.87087 0.95514 0.90171 0.93502 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 11.37 21.45 0.24 -50.81 16 2 C 0.02 0.88 5.31 84.65 0.45 1.33 16 3 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.53 -28.04 8.56 25.60 0.22 -27.83 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.02 2.16 -11.46 -0.02 2.00 16 10 C -0.10 -3.94 5.32 30.65 0.16 -3.77 16 11 C 0.09 3.24 4.86 86.33 0.42 3.66 16 12 N -0.46 -16.09 4.60 -707.50 -3.25 -19.34 16 13 C 0.45 15.11 6.83 260.78 1.78 16.89 16 14 N -0.59 -20.05 10.41 -202.02 -2.10 -22.15 16 15 C 0.20 5.67 13.02 180.76 2.35 8.03 16 16 N -0.34 -9.88 12.68 -61.25 -0.78 -10.65 16 17 N -0.37 -11.09 3.65 -349.85 -1.28 -12.37 16 18 C 0.16 3.81 6.63 86.38 0.57 4.38 16 19 C -0.18 -4.02 6.01 -10.79 -0.06 -4.09 16 20 C -0.16 -2.79 10.18 30.62 0.31 -2.48 16 21 C -0.16 -2.64 10.25 30.62 0.31 -2.32 16 22 C 0.08 2.85 5.21 86.32 0.45 3.30 16 23 C -0.09 -4.02 5.12 30.65 0.16 -3.87 16 24 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 29 H 0.04 1.50 8.09 -2.39 -0.02 1.49 16 30 H 0.25 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.10 2.45 6.10 -2.39 -0.01 2.43 16 32 H 0.11 2.18 7.88 -2.39 -0.02 2.16 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.11 1.59 8.03 -2.38 -0.02 1.57 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.08 2.63 6.20 -2.39 -0.01 2.61 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 3.72 6.17 -2.39 -0.01 3.71 16 Total: -1.00 -61.33 331.00 2.97 -58.36 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.01 Total: 17.36 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 7.10 Total: -4.78 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -7.17 Total: -115.33 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -61.33 2.97 -58.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515624417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.309 kcal (2) G-P(sol) polarization free energy of solvation -61.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds