Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.50678 * 2 1 4 4 C 1.53051 * 109.48916 * 239.95286 * 2 1 3 5 5 N 1.46953 * 109.36552 * 181.63286 * 4 2 1 6 6 C 1.46905 * 111.00096 * 183.18528 * 5 4 2 7 7 C 1.53003 * 109.47244 * 170.15070 * 6 5 4 8 8 C 1.50695 * 109.46993 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99711 * 179.97438 * 8 7 6 11 11 N 1.31523 * 120.00042 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00129 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47116 * 90.00255 * 12 10 8 14 14 H 1.48505 * 109.47079 * 210.00033 * 12 10 8 15 15 H 1.48502 * 109.47302 * 329.99672 * 12 10 8 16 16 C 1.46952 * 110.88443 * 59.31414 * 5 4 2 17 17 C 1.53051 * 109.36553 * 300.68133 * 16 5 4 18 18 N 1.46952 * 109.49240 * 120.05649 * 2 1 3 19 19 C 1.39004 * 110.99857 * 303.15586 * 18 2 1 20 20 C 1.39328 * 120.09499 * 292.21963 * 19 18 2 21 21 N 1.31924 * 119.88700 * 179.74349 * 20 19 18 22 22 C 1.32269 * 120.08881 * 0.54016 * 21 20 19 23 23 C 1.38163 * 120.19211 * 359.48071 * 22 21 20 24 24 N 1.32248 * 120.10760 * 0.23561 * 23 22 21 25 25 H 1.09004 * 109.47087 * 299.94042 * 1 2 3 26 26 H 1.08997 * 109.47199 * 59.94270 * 1 2 3 27 27 H 1.08993 * 109.46868 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.49045 * 61.66120 * 4 2 1 29 29 H 1.09001 * 109.50175 * 301.60665 * 4 2 1 30 30 H 1.09000 * 109.46642 * 290.15301 * 6 5 4 31 31 H 1.09001 * 109.46653 * 50.15035 * 6 5 4 32 32 H 1.08994 * 109.47054 * 300.00267 * 7 6 5 33 33 H 1.09004 * 109.47083 * 59.99917 * 7 6 5 34 34 H 0.96996 * 120.00307 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.49190 * 180.71266 * 16 5 4 36 36 H 1.09008 * 109.48893 * 60.64638 * 16 5 4 37 37 H 1.08994 * 109.49021 * 298.43274 * 17 16 5 38 38 H 1.08996 * 109.48884 * 178.36565 * 17 16 5 39 39 H 1.08001 * 120.05659 * 0.03008 * 20 19 18 40 40 H 1.08002 * 119.90807 * 179.76648 * 22 21 20 41 41 H 1.07999 * 119.94631 * 180.25988 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 3.5096 -0.7551 -1.2266 6 6 4.0411 -1.3750 -2.4478 7 6 5.5566 -1.1727 -2.5044 8 6 6.1018 -1.8091 -3.7569 9 1 5.4341 -2.3076 -4.4440 10 6 7.4529 -1.7541 -4.0261 11 7 7.9288 -2.3091 -5.1194 12 14 8.6077 -0.8914 -2.8380 13 1 9.1005 -1.8656 -1.8314 14 1 9.7595 -0.3288 -3.5877 15 1 7.8811 0.2062 -2.1504 16 6 4.0000 -1.4490 -0.0275 17 6 3.4894 -0.7264 1.2214 18 7 2.0203 -0.6938 1.1990 19 6 1.5175 -0.1073 2.3546 20 6 1.9192 1.1763 2.7183 21 7 1.4355 1.7310 3.8131 22 6 0.5788 1.0662 4.5705 23 6 0.1783 -0.2070 4.2134 24 7 0.6541 -0.7683 3.1145 25 1 -0.3633 0.5129 0.8906 26 1 -0.3633 0.5147 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7021 -0.1927 -2.1394 29 1 1.6544 -1.7416 -1.2632 30 1 3.8168 -2.4416 -2.4410 31 1 3.5799 -0.9122 -3.3203 32 1 5.7808 -0.1061 -2.5111 33 1 6.0178 -1.6354 -1.6318 34 1 8.8793 -2.2707 -5.3087 35 1 5.0899 -1.4490 -0.0276 36 1 3.6360 -2.4765 -0.0275 37 1 3.8756 0.2927 1.2353 38 1 3.8279 -1.2561 2.1118 39 1 2.6219 1.7180 2.1025 40 1 0.1875 1.5217 5.4682 41 1 -0.5246 -0.7446 4.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656579539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = 72.366374 kcal Electronic energy + Delta-G solvation = -21494.202125 eV Core-core repulsion = 18409.733239 eV Total energy + Delta-G solvation = -3084.468887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61041 -39.34368 -36.15792 -34.36787 -33.08457 -32.65000 -31.15463 -29.83327 -27.76287 -26.06336 -24.91154 -23.95543 -23.12345 -22.24757 -20.06037 -19.76769 -17.76264 -17.63439 -17.01649 -16.71742 -15.94292 -15.15289 -15.07519 -14.52302 -14.45333 -14.38040 -13.93723 -13.76588 -13.20737 -12.88387 -12.67376 -12.40755 -12.20124 -11.83085 -11.81887 -11.59351 -11.42315 -11.23329 -11.10634 -10.94732 -10.80796 -9.97770 -9.91268 -9.82591 -9.70155 -9.46583 -9.21758 -8.53576 -8.46110 -7.92656 -6.05091 -4.03410 0.41847 0.86486 3.06016 3.30934 3.36653 3.38855 3.43737 3.94234 4.11618 4.20369 4.32719 4.45282 4.61163 4.83026 4.91143 4.94129 5.06619 5.11795 5.21170 5.29190 5.35288 5.43327 5.52505 5.58782 5.68129 5.84344 5.90283 6.02626 6.04965 6.10205 6.19106 6.32300 6.63868 6.70835 6.73946 7.09048 7.18645 7.25336 7.52384 7.56338 7.59723 7.82722 8.52052 8.99129 9.57241 11.08310 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.003783 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.784245 B = 7399.553317 C = 7910.641713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.057 0.943 4 C 0.063 3.937 5 N -0.544 5.544 6 C 0.072 3.928 7 C -0.007 4.007 8 C -0.522 4.522 9 H 0.071 0.929 10 C 0.067 3.933 11 N -0.904 5.904 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C 0.056 3.944 17 C 0.066 3.934 18 N -0.495 5.495 19 C 0.275 3.725 20 C 0.025 3.975 21 N -0.430 5.430 22 C 0.032 3.968 23 C 0.062 3.938 24 N -0.423 5.423 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.021 6.313 18.217 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 H 0.075 0.925 4 C -0.066 4.066 5 N -0.269 5.269 6 C -0.055 4.055 7 C -0.044 4.044 8 C -0.560 4.560 9 H 0.089 0.911 10 C -0.134 4.134 11 N -0.543 5.543 12 Si 0.707 3.293 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.188 1.188 16 C -0.072 4.072 17 C -0.061 4.061 18 N -0.220 5.220 19 C 0.043 3.957 20 C -0.139 4.139 21 N -0.145 5.145 22 C -0.127 4.127 23 C -0.099 4.099 24 N -0.139 5.139 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.859 6.268 18.085 24.857 hybrid contribution 0.705 0.279 0.613 0.975 sum -15.155 6.547 18.698 24.943 Atomic orbital electron populations 1.21815 0.93872 1.03012 1.01392 1.21807 0.95137 0.96095 0.88213 0.92484 1.22153 0.88914 0.99465 0.96028 1.62286 1.06681 1.54529 1.03402 1.22124 0.98186 0.95898 0.89245 1.19571 0.90453 0.97418 0.97006 1.21078 0.93451 1.35707 1.05768 0.91110 1.25001 0.98233 0.94997 0.95147 1.69915 1.13829 1.45056 1.25476 0.86774 0.80530 0.80646 0.81352 1.20362 1.21430 1.18754 1.22175 1.00966 0.95675 0.88395 1.22321 0.83600 1.00694 0.99448 1.58922 1.09808 1.54171 0.99050 1.20564 0.92975 0.89500 0.92705 1.24343 0.99872 0.94539 0.95180 1.68353 1.07159 1.35337 1.03617 1.23734 0.95232 0.93711 0.99995 1.23762 0.98410 0.94095 0.93597 1.68175 1.07360 1.35035 1.03349 0.93605 0.91366 0.91242 0.89892 0.93908 0.95286 0.91300 0.95719 0.97104 0.92720 0.88916 0.93826 0.93042 0.90233 0.81660 0.81361 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.01 37.16 0.33 -1.20 16 2 C 0.09 1.15 2.36 -67.66 -0.16 0.99 16 3 H 0.06 0.70 7.67 -51.92 -0.40 0.30 16 4 C 0.06 0.87 4.89 -3.77 -0.02 0.85 16 5 N -0.54 -8.96 4.71 -234.46 -1.10 -10.06 16 6 C 0.07 1.41 4.90 -3.82 -0.02 1.39 16 7 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16 8 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 9 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 11 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 12 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 16 C 0.06 0.86 5.41 -3.77 -0.02 0.84 16 17 C 0.07 0.85 5.25 -3.77 -0.02 0.83 16 18 N -0.49 -6.37 4.60 -165.36 -0.76 -7.13 16 19 C 0.27 3.33 4.18 -154.73 -0.65 2.68 16 20 C 0.02 0.28 9.85 -17.11 -0.17 0.11 16 21 N -0.43 -4.71 10.49 -12.88 -0.14 -4.84 16 22 C 0.03 0.26 11.21 -17.39 -0.19 0.07 16 23 C 0.06 0.53 11.21 -17.40 -0.20 0.33 16 24 N -0.42 -5.04 10.53 -12.24 -0.13 -5.17 16 25 H 0.04 0.51 7.14 -51.93 -0.37 0.14 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 33 H 0.01 0.25 5.92 -51.93 -0.31 -0.06 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.09 1.50 6.33 -51.93 -0.33 1.17 16 36 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.05 0.64 7.04 -51.93 -0.37 0.27 16 38 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 39 H 0.17 1.72 7.05 -52.49 -0.37 1.35 16 40 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -32.22 325.57 -9.08 -41.30 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.32 Total: -2.35 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.65 Total: -6.55 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -1.35 Total: -54.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.22 -9.08 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656579539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.666 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds