Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.50678 * 2 1 4 4 C 1.53051 * 109.48916 * 239.95286 * 2 1 3 5 5 N 1.46953 * 109.36552 * 181.63286 * 4 2 1 6 6 C 1.46905 * 111.00096 * 183.18528 * 5 4 2 7 7 C 1.53003 * 109.47244 * 170.15070 * 6 5 4 8 8 C 1.50695 * 109.46993 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99711 * 179.97438 * 8 7 6 11 11 N 1.31523 * 120.00042 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00129 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47116 * 90.00255 * 12 10 8 14 14 H 1.48505 * 109.47079 * 210.00033 * 12 10 8 15 15 H 1.48502 * 109.47302 * 329.99672 * 12 10 8 16 16 C 1.46952 * 110.88443 * 59.31414 * 5 4 2 17 17 C 1.53051 * 109.36553 * 300.68133 * 16 5 4 18 18 N 1.46952 * 109.49240 * 120.05649 * 2 1 3 19 19 C 1.39004 * 110.99857 * 303.15586 * 18 2 1 20 20 C 1.39328 * 120.09499 * 292.21963 * 19 18 2 21 21 N 1.31924 * 119.88700 * 179.74349 * 20 19 18 22 22 C 1.32269 * 120.08881 * 0.54016 * 21 20 19 23 23 C 1.38163 * 120.19211 * 359.48071 * 22 21 20 24 24 N 1.32248 * 120.10760 * 0.23561 * 23 22 21 25 25 H 1.09004 * 109.47087 * 299.94042 * 1 2 3 26 26 H 1.08997 * 109.47199 * 59.94270 * 1 2 3 27 27 H 1.08993 * 109.46868 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.49045 * 61.66120 * 4 2 1 29 29 H 1.09001 * 109.50175 * 301.60665 * 4 2 1 30 30 H 1.09000 * 109.46642 * 290.15301 * 6 5 4 31 31 H 1.09001 * 109.46653 * 50.15035 * 6 5 4 32 32 H 1.08994 * 109.47054 * 300.00267 * 7 6 5 33 33 H 1.09004 * 109.47083 * 59.99917 * 7 6 5 34 34 H 0.96996 * 120.00307 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.49190 * 180.71266 * 16 5 4 36 36 H 1.09008 * 109.48893 * 60.64638 * 16 5 4 37 37 H 1.08994 * 109.49021 * 298.43274 * 17 16 5 38 38 H 1.08996 * 109.48884 * 178.36565 * 17 16 5 39 39 H 1.08001 * 120.05659 * 0.03008 * 20 19 18 40 40 H 1.08002 * 119.90807 * 179.76648 * 22 21 20 41 41 H 1.07999 * 119.94631 * 180.25988 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 3.5096 -0.7551 -1.2266 6 6 4.0411 -1.3750 -2.4478 7 6 5.5566 -1.1727 -2.5044 8 6 6.1018 -1.8091 -3.7569 9 1 5.4341 -2.3076 -4.4440 10 6 7.4529 -1.7541 -4.0261 11 7 7.9288 -2.3091 -5.1194 12 14 8.6077 -0.8914 -2.8380 13 1 9.1005 -1.8656 -1.8314 14 1 9.7595 -0.3288 -3.5877 15 1 7.8811 0.2062 -2.1504 16 6 4.0000 -1.4490 -0.0275 17 6 3.4894 -0.7264 1.2214 18 7 2.0203 -0.6938 1.1990 19 6 1.5175 -0.1073 2.3546 20 6 1.9192 1.1763 2.7183 21 7 1.4355 1.7310 3.8131 22 6 0.5788 1.0662 4.5705 23 6 0.1783 -0.2070 4.2134 24 7 0.6541 -0.7683 3.1145 25 1 -0.3633 0.5129 0.8906 26 1 -0.3633 0.5147 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7021 -0.1927 -2.1394 29 1 1.6544 -1.7416 -1.2632 30 1 3.8168 -2.4416 -2.4410 31 1 3.5799 -0.9122 -3.3203 32 1 5.7808 -0.1061 -2.5111 33 1 6.0178 -1.6354 -1.6318 34 1 8.8793 -2.2707 -5.3087 35 1 5.0899 -1.4490 -0.0276 36 1 3.6360 -2.4765 -0.0275 37 1 3.8756 0.2927 1.2353 38 1 3.8279 -1.2561 2.1118 39 1 2.6219 1.7180 2.1025 40 1 0.1875 1.5217 5.4682 41 1 -0.5246 -0.7446 4.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656579539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = 48.337697 kcal Electronic energy + Delta-G solvation = -21495.244087 eV Core-core repulsion = 18409.733239 eV Total energy + Delta-G solvation = -3085.510849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.40623 -40.38040 -37.41244 -35.26682 -34.90783 -33.73853 -32.55389 -31.15530 -28.81656 -27.46771 -25.70516 -25.27988 -24.09662 -23.58746 -21.59005 -20.93216 -19.05081 -18.55191 -18.39328 -17.65323 -16.93781 -16.50363 -16.14594 -16.00666 -15.61411 -15.50952 -15.20958 -14.89262 -14.63440 -14.33736 -13.93941 -13.59063 -13.32360 -13.06088 -12.91770 -12.82482 -12.58919 -12.54193 -12.30051 -12.12133 -12.07248 -11.78285 -11.67062 -11.40701 -11.34988 -10.74576 -10.67617 -10.19745 -9.38979 -9.23808 -8.28840 -6.33033 -0.30035 0.11836 1.37142 1.39671 1.52325 2.20588 2.37562 2.64633 2.90786 3.06985 3.26845 3.37690 3.60729 3.71625 3.85540 4.04638 4.15866 4.17706 4.19413 4.28639 4.39356 4.46211 4.48879 4.54530 4.61280 4.68404 4.72206 4.87631 4.88375 4.94276 4.99963 5.17401 5.24308 5.30867 5.47657 5.64179 5.71260 5.82108 6.08179 6.16513 6.30523 6.42664 6.75013 6.83818 7.31733 8.87945 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.003783 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.784245 B = 7399.553317 C = 7910.641713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.099 3.901 3 H 0.059 0.941 4 C 0.064 3.936 5 N -0.545 5.545 6 C 0.084 3.916 7 C 0.001 3.999 8 C -0.532 4.532 9 H 0.032 0.968 10 C 0.006 3.994 11 N -0.952 5.952 12 Si 0.951 3.049 13 H -0.266 1.266 14 H -0.285 1.285 15 H -0.245 1.245 16 C 0.056 3.944 17 C 0.075 3.925 18 N -0.504 5.504 19 C 0.259 3.741 20 C 0.018 3.982 21 N -0.451 5.451 22 C 0.042 3.958 23 C 0.067 3.933 24 N -0.451 5.451 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.036 0.964 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.208 0.792 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.025 7.780 21.181 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 H 0.077 0.923 4 C -0.064 4.064 5 N -0.270 5.270 6 C -0.043 4.043 7 C -0.037 4.037 8 C -0.571 4.571 9 H 0.050 0.950 10 C -0.191 4.191 11 N -0.593 5.593 12 Si 0.774 3.226 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.169 1.169 16 C -0.072 4.072 17 C -0.052 4.052 18 N -0.229 5.229 19 C 0.028 3.972 20 C -0.145 4.145 21 N -0.166 5.166 22 C -0.117 4.117 23 C -0.094 4.094 24 N -0.168 5.168 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.184 0.816 40 H 0.224 0.776 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.877 7.741 21.045 28.065 hybrid contribution 0.878 -0.226 -0.261 0.943 sum -15.999 7.515 20.783 27.284 Atomic orbital electron populations 1.21719 0.92597 1.02651 1.02045 1.21754 0.96020 0.95699 0.87293 0.92307 1.22216 0.87023 0.99540 0.97619 1.62220 1.08424 1.53948 1.02375 1.21804 0.95996 0.95511 0.90986 1.19432 0.92887 0.96583 0.94757 1.21425 0.93332 1.35414 1.06904 0.94982 1.25986 1.00245 0.95837 0.97056 1.70069 1.14482 1.46931 1.27786 0.85645 0.78005 0.79961 0.78978 1.19124 1.21076 1.16884 1.22173 1.00470 0.95555 0.89008 1.22190 0.84114 1.00707 0.98191 1.58859 1.09504 1.54768 0.99760 1.20436 0.94051 0.89978 0.92745 1.24284 1.00281 0.94286 0.95670 1.68391 1.08197 1.36070 1.03918 1.24393 0.93572 0.93475 1.00275 1.24401 0.98019 0.94369 0.92638 1.68152 1.07924 1.36059 1.04626 0.93794 0.89764 0.92063 0.88951 0.94607 0.96380 0.91563 0.95807 0.96305 0.92483 0.89833 0.94728 0.92430 0.89485 0.81594 0.77579 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.01 71.98 0.65 -1.98 16 2 C 0.10 2.30 2.36 44.92 0.11 2.41 16 3 H 0.06 1.36 7.67 -2.38 -0.02 1.34 16 4 C 0.06 1.72 4.89 86.31 0.42 2.15 16 5 N -0.55 -17.62 4.71 -895.71 -4.22 -21.84 16 6 C 0.08 3.34 4.90 86.30 0.42 3.76 16 7 C 0.00 0.05 3.97 29.85 0.12 0.17 16 8 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 9 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 10 C 0.01 0.32 5.47 84.65 0.46 0.79 16 11 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 12 Si 0.95 44.41 27.47 68.60 1.88 46.30 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 16 C 0.06 1.69 5.41 86.31 0.47 2.16 16 17 C 0.07 1.85 5.25 86.31 0.45 2.31 16 18 N -0.50 -12.43 4.60 -677.07 -3.11 -15.54 16 19 C 0.26 5.87 4.18 133.03 0.56 6.43 16 20 C 0.02 0.37 9.85 84.94 0.84 1.20 16 21 N -0.45 -8.81 10.49 -194.67 -2.04 -10.85 16 22 C 0.04 0.55 11.21 84.61 0.95 1.50 16 23 C 0.07 0.92 11.21 84.61 0.95 1.87 16 24 N -0.45 -9.83 10.53 -192.64 -2.03 -11.86 16 25 H 0.04 0.90 7.14 -2.38 -0.02 0.88 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 31 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 32 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 33 H 0.02 0.85 5.92 -2.38 -0.01 0.84 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.08 2.64 6.33 -2.39 -0.02 2.62 16 36 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.06 1.35 7.04 -2.39 -0.02 1.33 16 38 H 0.09 2.01 8.13 -2.39 -0.02 1.99 16 39 H 0.17 3.27 7.05 -2.91 -0.02 3.25 16 40 H 0.21 0.96 8.06 -2.91 -0.02 0.93 16 41 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -70.72 325.57 -1.63 -72.35 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.95 Total: 9.03 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 6.64 Total: -7.81 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -11.10 Total: -119.88 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -70.72 -1.63 -72.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656579539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.692 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds