Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.50697 * 109.47224 * 180.02562 * 13 12 2 15 15 C 1.38604 * 120.72097 * 269.72031 * 14 13 12 16 16 N 1.32269 * 119.20033 * 179.78632 * 15 14 13 17 17 C 1.32494 * 120.73982 * 0.47501 * 16 15 14 18 18 N 1.38407 * 119.22171 * 179.75574 * 17 16 15 19 19 C 1.48534 * 111.00144 * 242.62775 * 18 17 16 20 20 C 1.54930 * 103.23006 * 159.71555 * 19 18 17 21 21 C 1.54603 * 102.92452 * 322.58739 * 20 19 18 22 22 C 1.47909 * 110.99725 * 0.02562 * 18 17 16 23 23 N 1.32494 * 121.56335 * 359.77325 * 17 16 15 24 24 C 1.32272 * 120.74187 * 359.97438 * 23 17 16 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 30 30 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 31 31 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 32 32 H 1.08006 * 120.39916 * 359.97438 * 15 14 13 33 33 H 1.08998 * 110.66540 * 278.15339 * 19 18 17 34 34 H 1.09007 * 110.66540 * 41.27887 * 19 18 17 35 35 H 1.08998 * 110.72918 * 204.22607 * 20 19 18 36 36 H 1.09003 * 110.72177 * 80.94168 * 20 19 18 37 37 H 1.08997 * 110.30490 * 263.04098 * 21 20 19 38 38 H 1.08995 * 110.31431 * 140.86882 * 21 20 19 39 39 H 1.09000 * 109.91565 * 333.51298 * 22 18 17 40 40 H 1.09007 * 109.91082 * 94.80341 * 22 18 17 41 41 H 1.07996 * 120.40404 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 6 1.7069 -1.1542 4.4180 16 7 2.1841 -1.8022 5.4676 17 6 3.4872 -1.8423 5.7038 18 7 3.9520 -2.5252 6.8143 19 6 4.6396 -1.6050 7.7559 20 6 4.6076 -2.3807 9.0966 21 6 3.2228 -3.0674 9.0659 22 6 2.8332 -3.1206 7.5769 23 7 4.3560 -1.2437 4.9023 24 6 3.9451 -0.5829 3.8327 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 2.9173 -1.1204 1.0288 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 0.6432 -1.1212 4.2332 33 1 5.6671 -1.4273 7.4387 34 1 4.0945 -0.6650 7.8422 35 1 4.6795 -1.6951 9.9409 36 1 5.4053 -3.1228 9.1321 37 1 2.4963 -2.4790 9.6263 38 1 3.2910 -4.0753 9.4752 39 1 1.9226 -2.5451 7.4105 40 1 2.6832 -4.1555 7.2689 41 1 4.6581 -0.0974 3.1829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658513530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = 65.972369 kcal Electronic energy + Delta-G solvation = -20780.350791 eV Core-core repulsion = 17695.604639 eV Total energy + Delta-G solvation = -3084.746152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25238 -38.80930 -36.16729 -33.67305 -33.63272 -32.27981 -30.46523 -29.19601 -27.95777 -25.46859 -24.70664 -24.46823 -22.54037 -21.27396 -20.91720 -19.84250 -17.94841 -17.58325 -16.67824 -16.09112 -15.20143 -15.12099 -14.80638 -14.33035 -14.16569 -13.78429 -13.64413 -13.41687 -13.13614 -12.72025 -12.57151 -12.43632 -11.92059 -11.69895 -11.50160 -11.38498 -11.05452 -10.89717 -10.83483 -10.72091 -10.64016 -10.34079 -10.19340 -10.12476 -9.84376 -9.05438 -8.90755 -8.52409 -8.35535 -7.39056 -6.07297 -4.14118 1.02213 1.21723 3.18310 3.29036 3.33511 3.36619 3.78613 4.10368 4.30659 4.37222 4.55318 4.65977 4.80460 4.88322 5.02959 5.06211 5.09260 5.17946 5.23976 5.50355 5.51495 5.52620 5.55258 5.71989 5.77634 5.81175 5.93892 6.07210 6.18987 6.31071 6.42396 6.77747 6.80636 7.06617 7.15131 7.23188 7.41685 7.72625 7.82079 8.19164 8.20450 8.28781 8.56762 8.95002 9.52162 10.98897 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041554 B = 0.003033 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.654940 B = 9228.333040 C = 9424.618328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.684 5.684 13 C 0.108 3.892 14 C -0.194 4.194 15 C 0.186 3.814 16 N -0.551 5.551 17 C 0.469 3.531 18 N -0.447 5.447 19 C 0.054 3.946 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.038 3.962 23 N -0.525 5.525 24 C 0.171 3.829 25 H 0.004 0.996 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.169 0.831 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -2.661 20.913 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.023 4.023 14 C -0.200 4.200 15 C 0.019 3.981 16 N -0.270 5.270 17 C 0.112 3.888 18 N -0.168 5.168 19 C -0.072 4.072 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.089 4.089 23 N -0.242 5.242 24 C 0.004 3.996 25 H 0.023 0.977 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.283 -3.699 21.572 22.302 hybrid contribution 0.237 0.963 -1.844 2.093 sum 4.519 -2.735 19.728 20.423 Atomic orbital electron populations 1.21729 0.97764 0.99438 0.99439 1.19131 0.92690 0.92371 0.85294 0.97938 1.21210 1.31700 1.12623 0.90415 0.92253 1.24911 0.94971 0.94971 0.99053 1.69881 1.36456 1.22830 1.23670 0.86571 0.79111 0.79806 0.81994 1.21261 1.20283 1.20172 1.60835 1.32267 1.32688 1.05717 1.20704 1.00227 0.93060 0.88315 1.21706 0.95476 1.02742 1.00032 1.22982 1.00876 0.87403 0.86875 1.68251 1.14890 1.21786 1.22078 1.21099 0.84787 0.89495 0.93414 1.61324 1.23882 1.26718 1.04876 1.23202 1.00135 0.93447 0.90391 1.22539 0.97871 0.99572 0.96294 1.22459 0.97000 1.01673 0.95932 1.22944 0.93418 1.01234 0.91344 1.67994 1.38756 1.11571 1.05835 1.23053 0.94088 0.91180 0.91327 0.97662 0.90005 0.94898 0.92801 0.85107 0.94757 0.90448 0.81370 0.88668 0.93148 0.90441 0.90249 0.91116 0.90606 0.89695 0.89829 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.19 37.16 0.34 -2.68 16 2 C 0.21 5.18 2.60 -68.87 -0.18 5.00 16 3 H 0.00 0.08 7.80 -51.92 -0.40 -0.33 16 4 C -0.52 -14.02 8.59 -34.44 -0.30 -14.32 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.68 -13.91 6.29 -109.22 -0.69 -14.60 16 13 C 0.11 1.78 5.66 -4.98 -0.03 1.75 16 14 C -0.19 -2.89 5.43 -104.35 -0.57 -3.45 16 15 C 0.19 2.70 11.00 -17.23 -0.19 2.51 16 16 N -0.55 -8.29 8.14 -13.93 -0.11 -8.41 16 17 C 0.47 7.11 6.98 -322.80 -2.25 4.86 16 18 N -0.45 -5.83 5.35 -171.41 -0.92 -6.75 16 19 C 0.05 0.56 6.31 -1.90 -0.01 0.55 16 20 C -0.12 -0.93 7.06 -24.87 -0.18 -1.11 16 21 C -0.13 -1.02 6.93 -25.37 -0.18 -1.20 16 22 C 0.04 0.41 6.34 -2.75 -0.02 0.39 16 23 N -0.52 -8.15 10.21 -13.93 -0.14 -8.29 16 24 C 0.17 2.48 11.00 -17.23 -0.19 2.29 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 26 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.73 8.22 -39.29 -0.32 6.41 16 30 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 31 H 0.08 1.26 7.39 -51.93 -0.38 0.88 16 32 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.54 7.99 -51.92 -0.42 0.12 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.01 6.46 -51.93 -0.34 0.67 16 40 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -29.70 333.01 -11.39 -41.09 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.32 Total: 4.03 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.84 Total: -3.78 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -1.23 Total: -62.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.70 -11.39 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658513530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.065 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds