Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.50697 * 109.47224 * 180.02562 * 13 12 2 15 15 C 1.38604 * 120.72097 * 269.72031 * 14 13 12 16 16 N 1.32269 * 119.20033 * 179.78632 * 15 14 13 17 17 C 1.32494 * 120.73982 * 0.47501 * 16 15 14 18 18 N 1.38407 * 119.22171 * 179.75574 * 17 16 15 19 19 C 1.48534 * 111.00144 * 242.62775 * 18 17 16 20 20 C 1.54930 * 103.23006 * 159.71555 * 19 18 17 21 21 C 1.54603 * 102.92452 * 322.58739 * 20 19 18 22 22 C 1.47909 * 110.99725 * 0.02562 * 18 17 16 23 23 N 1.32494 * 121.56335 * 359.77325 * 17 16 15 24 24 C 1.32272 * 120.74187 * 359.97438 * 23 17 16 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 30 30 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 31 31 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 32 32 H 1.08006 * 120.39916 * 359.97438 * 15 14 13 33 33 H 1.08998 * 110.66540 * 278.15339 * 19 18 17 34 34 H 1.09007 * 110.66540 * 41.27887 * 19 18 17 35 35 H 1.08998 * 110.72918 * 204.22607 * 20 19 18 36 36 H 1.09003 * 110.72177 * 80.94168 * 20 19 18 37 37 H 1.08997 * 110.30490 * 263.04098 * 21 20 19 38 38 H 1.08995 * 110.31431 * 140.86882 * 21 20 19 39 39 H 1.09000 * 109.91565 * 333.51298 * 22 18 17 40 40 H 1.09007 * 109.91082 * 94.80341 * 22 18 17 41 41 H 1.07996 * 120.40404 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 6 1.7069 -1.1542 4.4180 16 7 2.1841 -1.8022 5.4676 17 6 3.4872 -1.8423 5.7038 18 7 3.9520 -2.5252 6.8143 19 6 4.6396 -1.6050 7.7559 20 6 4.6076 -2.3807 9.0966 21 6 3.2228 -3.0674 9.0659 22 6 2.8332 -3.1206 7.5769 23 7 4.3560 -1.2437 4.9023 24 6 3.9451 -0.5829 3.8327 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 2.9173 -1.1204 1.0288 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 0.6432 -1.1212 4.2332 33 1 5.6671 -1.4273 7.4387 34 1 4.0945 -0.6650 7.8422 35 1 4.6795 -1.6951 9.9409 36 1 5.4053 -3.1228 9.1321 37 1 2.4963 -2.4790 9.6263 38 1 3.2910 -4.0753 9.4752 39 1 1.9226 -2.5451 7.4105 40 1 2.6832 -4.1555 7.2689 41 1 4.6581 -0.0974 3.1829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658513530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = 47.903366 kcal Electronic energy + Delta-G solvation = -20781.134322 eV Core-core repulsion = 17695.604639 eV Total energy + Delta-G solvation = -3085.529683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.34682 -39.72936 -37.81091 -35.15712 -34.80303 -33.71464 -31.80968 -29.98229 -29.53647 -27.37372 -26.08425 -25.61538 -23.68292 -22.23351 -21.75428 -21.66861 -18.93829 -18.76764 -18.53493 -16.94198 -16.92546 -16.27495 -16.02720 -15.79822 -15.44005 -15.32189 -14.77459 -14.51976 -14.41494 -14.00193 -13.56334 -13.52877 -13.29111 -13.14074 -12.87610 -12.71850 -12.48730 -12.26888 -12.18133 -12.17065 -12.08812 -11.88258 -11.68195 -11.40010 -11.05690 -10.85782 -10.57196 -10.20776 -9.44648 -9.06197 -8.13387 -6.27022 -0.12956 0.08030 1.42881 1.44280 1.51717 2.19929 2.41327 2.65231 3.08023 3.15621 3.53203 3.65259 3.71505 3.79909 3.84758 3.89291 4.05330 4.10120 4.27234 4.48213 4.62501 4.68832 4.76017 4.83110 4.87358 4.92756 4.94426 5.05000 5.10692 5.11899 5.22814 5.23347 5.26027 5.48581 5.56198 5.66421 5.69131 5.87412 6.13576 6.24221 6.44225 6.74457 6.97097 7.06104 7.43287 8.91701 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041554 B = 0.003033 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.654940 B = 9228.333040 C = 9424.618328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.217 3.783 3 H -0.022 1.022 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.959 3.041 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.116 3.884 14 C -0.200 4.200 15 C 0.184 3.816 16 N -0.560 5.560 17 C 0.462 3.538 18 N -0.461 5.461 19 C 0.052 3.948 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.035 3.965 23 N -0.542 5.542 24 C 0.172 3.828 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.331 0.669 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.185 0.815 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -3.313 22.261 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.005 1.005 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.014 4.014 14 C -0.206 4.206 15 C 0.018 3.982 16 N -0.279 5.279 17 C 0.106 3.894 18 N -0.182 5.182 19 C -0.074 4.074 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.092 4.092 23 N -0.259 5.259 24 C 0.005 3.995 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.202 0.798 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.840 -4.359 22.954 23.860 hybrid contribution 0.088 1.150 -2.182 2.468 sum 4.928 -3.209 20.772 21.589 Atomic orbital electron populations 1.21562 0.97585 0.98871 0.99358 1.18916 0.92800 0.91016 0.86343 1.00466 1.21562 1.31790 1.12721 0.91754 0.92535 1.25670 0.95171 0.95651 1.01858 1.70001 1.37286 1.23932 1.24246 0.85606 0.78765 0.78619 0.78596 1.20890 1.19612 1.19943 1.60724 1.32316 1.33159 1.05211 1.20623 1.00756 0.92639 0.87412 1.21474 0.95760 1.03606 0.99731 1.23287 1.01674 0.86722 0.86541 1.68350 1.14945 1.22270 1.22300 1.21499 0.84908 0.89062 0.93967 1.61391 1.24644 1.26983 1.05176 1.23296 0.99435 0.93290 0.91347 1.22555 0.97860 0.99710 0.95222 1.22459 0.97311 1.02940 0.93624 1.23014 0.92470 1.00431 0.93307 1.68061 1.39061 1.12414 1.06382 1.23357 0.94377 0.90590 0.91169 0.95289 0.92510 0.95525 0.92795 0.85158 0.94321 0.90025 0.79845 0.89029 0.93704 0.88189 0.89675 0.89932 0.89050 0.90899 0.90331 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 9.19 71.98 0.66 -4.88 16 2 C 0.22 10.64 2.60 44.17 0.11 10.76 16 3 H -0.02 -1.18 7.80 -2.38 -0.02 -1.20 16 4 C -0.54 -29.14 8.59 25.60 0.22 -28.92 16 5 H 0.06 3.01 7.62 -2.91 -0.02 2.99 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -51.80 11.32 21.45 0.24 -51.56 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.68 -27.47 6.29 -499.46 -3.14 -30.61 16 13 C 0.12 3.73 5.66 85.56 0.48 4.21 16 14 C -0.20 -5.77 5.43 -19.69 -0.11 -5.88 16 15 C 0.18 5.20 11.00 84.71 0.93 6.13 16 16 N -0.56 -16.46 8.14 -197.98 -1.61 -18.08 16 17 C 0.46 13.75 6.98 261.49 1.83 15.57 16 18 N -0.46 -11.61 5.35 -696.22 -3.73 -15.34 16 19 C 0.05 1.00 6.31 86.65 0.55 1.55 16 20 C -0.12 -1.44 7.06 31.80 0.22 -1.21 16 21 C -0.13 -1.63 6.93 31.48 0.22 -1.41 16 22 C 0.03 0.71 6.34 86.45 0.55 1.26 16 23 N -0.54 -16.49 10.21 -197.99 -2.02 -18.51 16 24 C 0.17 4.85 11.00 84.71 0.93 5.78 16 25 H 0.03 1.20 7.45 -2.39 -0.02 1.18 16 26 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.33 13.33 8.22 -89.70 -0.74 12.59 16 30 H 0.04 1.23 8.01 -2.39 -0.02 1.21 16 31 H 0.08 2.56 7.39 -2.39 -0.02 2.54 16 32 H 0.18 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 0.91 7.99 -2.38 -0.02 0.89 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.68 6.46 -2.39 -0.02 1.66 16 40 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.19 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -62.86 333.01 -0.90 -63.76 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.29 Total: 20.93 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 7.05 Total: 4.29 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -10.26 Total: -134.10 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.86 -0.90 -63.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658513530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.664 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds