Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46601 * 2 1 4 4 C 1.50691 * 109.47324 * 119.99417 * 2 1 3 5 5 H 1.08005 * 119.99916 * 114.48738 * 4 2 1 6 6 C 1.37879 * 120.00577 * 294.48531 * 4 2 1 7 7 N 1.31510 * 120.00198 * 164.58060 * 6 4 2 8 8 Si 1.86805 * 119.99658 * 344.86742 * 6 4 2 9 9 H 1.48501 * 109.46584 * 269.71824 * 8 6 4 10 10 H 1.48498 * 109.47364 * 29.71818 * 8 6 4 11 11 H 1.48499 * 109.47013 * 149.72239 * 8 6 4 12 12 N 1.46897 * 109.47196 * 240.00287 * 2 1 3 13 13 C 1.46901 * 111.00336 * 84.99406 * 12 2 1 14 14 C 1.50701 * 109.47015 * 179.97438 * 13 12 2 15 15 C 1.38598 * 120.72308 * 269.72010 * 14 13 12 16 16 N 1.32274 * 119.20105 * 179.78897 * 15 14 13 17 17 C 1.32500 * 120.73943 * 0.47520 * 16 15 14 18 18 N 1.38405 * 119.21840 * 179.75655 * 17 16 15 19 19 C 1.48538 * 110.99579 * 242.62421 * 18 17 16 20 20 C 1.54940 * 103.22466 * 159.72179 * 19 18 17 21 21 C 1.54591 * 102.92130 * 322.58585 * 20 19 18 22 22 C 1.47898 * 110.99975 * 0.02562 * 18 17 16 23 23 N 1.32497 * 121.56030 * 359.77706 * 17 16 15 24 24 C 1.32278 * 120.74259 * 359.97438 * 23 17 16 25 25 H 1.08994 * 109.47388 * 53.54764 * 1 2 3 26 26 H 1.09005 * 109.46503 * 173.54097 * 1 2 3 27 27 H 1.08994 * 109.47024 * 293.54008 * 1 2 3 28 28 H 0.96999 * 120.00545 * 355.19703 * 7 6 4 29 29 H 1.00905 * 110.99884 * 321.03790 * 12 2 1 30 30 H 1.08989 * 109.47165 * 300.00001 * 13 12 2 31 31 H 1.08998 * 109.46747 * 60.00467 * 13 12 2 32 32 H 1.08002 * 120.39975 * 0.02562 * 15 14 13 33 33 H 1.08997 * 110.66517 * 278.15855 * 19 18 17 34 34 H 1.09003 * 110.66804 * 41.28917 * 19 18 17 35 35 H 1.08998 * 110.72113 * 204.22700 * 20 19 18 36 36 H 1.08995 * 110.72644 * 80.94548 * 20 19 18 37 37 H 1.08998 * 110.31324 * 263.04162 * 21 20 19 38 38 H 1.08995 * 110.31020 * 140.87240 * 21 20 19 39 39 H 1.08994 * 109.91783 * 333.51317 * 22 18 17 40 40 H 1.09000 * 109.91542 * 94.80916 * 22 18 17 41 41 H 1.07998 * 120.39804 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 1.2304 5 1 2.5780 -1.6374 1.1339 6 6 1.7957 -0.1766 2.4795 7 7 1.9545 -0.9196 3.5529 8 14 1.2417 1.5996 2.6466 9 1 2.4314 2.4789 2.7761 10 1 0.4652 1.9913 1.4430 11 1 0.3884 1.7404 3.8538 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5885 -0.5215 -3.5557 15 6 3.9447 -0.5780 -3.8359 16 7 4.3561 -1.2431 -4.9027 17 6 3.4874 -1.8426 -5.7037 18 7 3.9522 -2.5257 -6.8141 19 6 3.4409 -1.9143 -8.0675 20 6 4.4328 -2.4265 -9.1420 21 6 5.7880 -2.4073 -8.3986 22 6 5.4267 -2.4531 -6.9022 23 7 2.1843 -1.8034 -5.4670 24 6 1.7073 -1.1594 -4.4146 25 1 -0.3634 0.6105 -0.8265 26 1 -0.3632 -1.0212 -0.1156 27 1 -0.3633 0.4104 0.9421 28 1 2.1701 -1.8611 3.4636 29 1 1.4497 -1.4979 -1.4100 30 1 1.0871 0.6162 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 4.6573 -0.0882 -3.1889 33 1 2.4299 -2.2616 -8.2804 34 1 3.4698 -0.8265 -8.0046 35 1 4.4536 -1.7539 -9.9995 36 1 4.1769 -3.4398 -9.4514 37 1 6.3327 -1.4915 -8.6284 38 1 6.3815 -3.2799 -8.6712 39 1 5.7844 -1.5510 -6.4060 40 1 5.8702 -3.3350 -6.4399 41 1 0.6442 -1.1313 -4.2268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658513539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = 68.849232 kcal Electronic energy + Delta-G solvation = -20842.585929 eV Core-core repulsion = 17757.964528 eV Total energy + Delta-G solvation = -3084.621402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32168 -38.86913 -36.48789 -33.73914 -33.69506 -32.33306 -30.81144 -29.23540 -28.37854 -25.19087 -24.70816 -24.42398 -22.59614 -21.32356 -20.96358 -20.01614 -18.00538 -17.66462 -17.50276 -16.14338 -15.39020 -15.13411 -14.79573 -14.67455 -14.10249 -13.68904 -13.63432 -13.44424 -13.23338 -12.80738 -12.69069 -12.47853 -12.09690 -11.92822 -11.71995 -11.54949 -11.43862 -11.27091 -10.94753 -10.77788 -10.63605 -10.48861 -10.12732 -10.03878 -9.63907 -9.13103 -8.92424 -8.44330 -8.29796 -7.54511 -6.41704 -4.03011 0.94092 1.14683 3.12571 3.38424 3.40636 3.55180 3.71090 4.04731 4.26359 4.49572 4.50995 4.62095 4.71953 4.80698 4.93039 4.96944 5.00917 5.13950 5.25935 5.31176 5.47449 5.48435 5.50371 5.67599 5.69979 5.75992 5.85712 5.92213 6.06660 6.19577 6.24969 6.33829 6.36790 6.55397 6.71218 6.76645 7.12299 7.16916 7.70987 8.12334 8.17665 8.25867 8.45894 9.01093 9.64823 10.96435 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.044173 B = 0.003146 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.716571 B = 8898.619559 C = 9109.172829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.188 3.812 3 H 0.029 0.971 4 C -0.583 4.583 5 H 0.062 0.938 6 C 0.028 3.972 7 N -0.910 5.910 8 Si 1.043 2.957 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.669 5.669 13 C 0.105 3.895 14 C -0.197 4.197 15 C 0.189 3.811 16 N -0.551 5.551 17 C 0.471 3.529 18 N -0.447 5.447 19 C 0.055 3.945 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.038 3.962 23 N -0.525 5.525 24 C 0.171 3.829 25 H 0.020 0.980 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.268 0.732 29 H 0.330 0.670 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 1.408 -23.944 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.080 3.920 3 H 0.047 0.953 4 C -0.621 4.621 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.545 5.545 8 Si 0.872 3.128 9 H -0.213 1.213 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.299 5.299 13 C -0.026 4.026 14 C -0.203 4.203 15 C 0.022 3.978 16 N -0.269 5.269 17 C 0.114 3.886 18 N -0.168 5.168 19 C -0.072 4.072 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.090 4.090 23 N -0.242 5.242 24 C 0.003 3.997 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.188 0.812 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.585 1.606 -23.442 23.769 hybrid contribution -0.731 -0.109 -0.381 0.832 sum 2.854 1.496 -23.823 24.040 Atomic orbital electron populations 1.22865 1.01102 0.99741 0.99857 1.19591 0.89021 0.94650 0.88772 0.95283 1.21973 1.39012 1.10991 0.90144 0.91949 1.25700 0.94689 1.05274 0.92006 1.70787 1.44624 1.08309 1.30735 0.84123 0.77080 0.75853 0.75788 1.21320 1.19972 1.21280 1.60833 1.58250 1.08561 1.02281 1.20750 0.98985 0.95001 0.87876 1.21643 0.95825 1.03284 0.99553 1.23014 0.94055 0.90251 0.90529 1.68275 1.39470 1.11569 1.07599 1.21119 0.85969 0.88520 0.92975 1.61316 1.09231 1.45990 1.00245 1.23206 1.00272 0.97179 0.86505 1.22539 0.94188 1.02343 0.97200 1.22459 0.97609 1.02684 0.94310 1.22950 0.85087 1.04270 0.96661 1.67992 1.14516 1.19908 1.21768 1.23015 1.00606 0.88594 0.87467 0.96069 0.93695 0.92530 0.92160 0.85329 0.94802 0.90220 0.81219 0.88670 0.93141 0.90415 0.90226 0.91087 0.90564 0.89667 0.89774 0.81640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 8.45 37.16 0.31 -3.34 16 2 C 0.19 4.27 2.12 -68.87 -0.15 4.12 16 3 H 0.03 0.67 6.43 -51.93 -0.33 0.33 16 4 C -0.58 -16.15 9.12 -34.44 -0.31 -16.47 16 5 H 0.06 1.91 8.06 -52.48 -0.42 1.49 16 6 C 0.03 0.79 5.33 -17.82 -0.09 0.70 16 7 N -0.91 -27.89 13.70 55.43 0.76 -27.13 16 8 Si 1.04 24.54 26.17 -169.99 -4.45 20.09 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.27 -5.82 5.53 56.52 0.31 -5.50 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.67 -13.11 6.22 -109.23 -0.68 -13.79 16 13 C 0.10 1.61 5.66 -4.97 -0.03 1.58 16 14 C -0.20 -2.81 5.43 -104.35 -0.57 -3.38 16 15 C 0.19 2.70 11.00 -17.23 -0.19 2.51 16 16 N -0.55 -8.18 8.15 -13.93 -0.11 -8.29 16 17 C 0.47 7.00 6.98 -322.80 -2.25 4.75 16 18 N -0.45 -5.72 5.35 -171.41 -0.92 -6.63 16 19 C 0.05 0.55 6.31 -1.89 -0.01 0.53 16 20 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 21 C -0.13 -1.00 6.93 -25.37 -0.18 -1.18 16 22 C 0.04 0.40 6.34 -2.75 -0.02 0.38 16 23 N -0.53 -7.89 10.21 -13.93 -0.14 -8.03 16 24 C 0.17 2.35 11.00 -17.22 -0.19 2.16 16 25 H 0.02 0.37 7.63 -51.93 -0.40 -0.03 16 26 H 0.04 0.91 8.01 -51.93 -0.42 0.49 16 27 H 0.06 1.23 5.06 -51.93 -0.26 0.97 16 28 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 29 H 0.33 6.29 8.38 -39.29 -0.33 5.96 16 30 H 0.03 0.48 7.52 -51.94 -0.39 0.09 16 31 H 0.08 1.20 8.01 -51.93 -0.42 0.78 16 32 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.52 7.99 -51.93 -0.42 0.10 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.00 6.46 -51.93 -0.34 0.67 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -31.63 328.53 -10.78 -42.41 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.34 Total: 5.14 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.85 Total: -8.71 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -1.09 Total: -63.87 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.45 Total: 20.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.63 -10.78 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658513539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.261 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds