Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46601 * 2 1 4 4 C 1.50691 * 109.47324 * 119.99417 * 2 1 3 5 5 H 1.08005 * 119.99916 * 114.48738 * 4 2 1 6 6 C 1.37879 * 120.00577 * 294.48531 * 4 2 1 7 7 N 1.31510 * 120.00198 * 164.58060 * 6 4 2 8 8 Si 1.86805 * 119.99658 * 344.86742 * 6 4 2 9 9 H 1.48501 * 109.46584 * 269.71824 * 8 6 4 10 10 H 1.48498 * 109.47364 * 29.71818 * 8 6 4 11 11 H 1.48499 * 109.47013 * 149.72239 * 8 6 4 12 12 N 1.46897 * 109.47196 * 240.00287 * 2 1 3 13 13 C 1.46901 * 111.00336 * 84.99406 * 12 2 1 14 14 C 1.50701 * 109.47015 * 179.97438 * 13 12 2 15 15 C 1.38598 * 120.72308 * 269.72010 * 14 13 12 16 16 N 1.32274 * 119.20105 * 179.78897 * 15 14 13 17 17 C 1.32500 * 120.73943 * 0.47520 * 16 15 14 18 18 N 1.38405 * 119.21840 * 179.75655 * 17 16 15 19 19 C 1.48538 * 110.99579 * 242.62421 * 18 17 16 20 20 C 1.54940 * 103.22466 * 159.72179 * 19 18 17 21 21 C 1.54591 * 102.92130 * 322.58585 * 20 19 18 22 22 C 1.47898 * 110.99975 * 0.02562 * 18 17 16 23 23 N 1.32497 * 121.56030 * 359.77706 * 17 16 15 24 24 C 1.32278 * 120.74259 * 359.97438 * 23 17 16 25 25 H 1.08994 * 109.47388 * 53.54764 * 1 2 3 26 26 H 1.09005 * 109.46503 * 173.54097 * 1 2 3 27 27 H 1.08994 * 109.47024 * 293.54008 * 1 2 3 28 28 H 0.96999 * 120.00545 * 355.19703 * 7 6 4 29 29 H 1.00905 * 110.99884 * 321.03790 * 12 2 1 30 30 H 1.08989 * 109.47165 * 300.00001 * 13 12 2 31 31 H 1.08998 * 109.46747 * 60.00467 * 13 12 2 32 32 H 1.08002 * 120.39975 * 0.02562 * 15 14 13 33 33 H 1.08997 * 110.66517 * 278.15855 * 19 18 17 34 34 H 1.09003 * 110.66804 * 41.28917 * 19 18 17 35 35 H 1.08998 * 110.72113 * 204.22700 * 20 19 18 36 36 H 1.08995 * 110.72644 * 80.94548 * 20 19 18 37 37 H 1.08998 * 110.31324 * 263.04162 * 21 20 19 38 38 H 1.08995 * 110.31020 * 140.87240 * 21 20 19 39 39 H 1.08994 * 109.91783 * 333.51317 * 22 18 17 40 40 H 1.09000 * 109.91542 * 94.80916 * 22 18 17 41 41 H 1.07998 * 120.39804 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 1.2304 5 1 2.5780 -1.6374 1.1339 6 6 1.7957 -0.1766 2.4795 7 7 1.9545 -0.9196 3.5529 8 14 1.2417 1.5996 2.6466 9 1 2.4314 2.4789 2.7761 10 1 0.4652 1.9913 1.4430 11 1 0.3884 1.7404 3.8538 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5885 -0.5215 -3.5557 15 6 3.9447 -0.5780 -3.8359 16 7 4.3561 -1.2431 -4.9027 17 6 3.4874 -1.8426 -5.7037 18 7 3.9522 -2.5257 -6.8141 19 6 3.4409 -1.9143 -8.0675 20 6 4.4328 -2.4265 -9.1420 21 6 5.7880 -2.4073 -8.3986 22 6 5.4267 -2.4531 -6.9022 23 7 2.1843 -1.8034 -5.4670 24 6 1.7073 -1.1594 -4.4146 25 1 -0.3634 0.6105 -0.8265 26 1 -0.3632 -1.0212 -0.1156 27 1 -0.3633 0.4104 0.9421 28 1 2.1701 -1.8611 3.4636 29 1 1.4497 -1.4979 -1.4100 30 1 1.0871 0.6162 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 4.6573 -0.0882 -3.1889 33 1 2.4299 -2.2616 -8.2804 34 1 3.4698 -0.8265 -8.0046 35 1 4.4536 -1.7539 -9.9995 36 1 4.1769 -3.4398 -9.4514 37 1 6.3327 -1.4915 -8.6284 38 1 6.3815 -3.2799 -8.6712 39 1 5.7844 -1.5510 -6.4060 40 1 5.8702 -3.3350 -6.4399 41 1 0.6442 -1.1313 -4.2268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658513539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = 47.205095 kcal Electronic energy + Delta-G solvation = -20843.524490 eV Core-core repulsion = 17757.964528 eV Total energy + Delta-G solvation = -3085.559962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36869 -39.75981 -38.03006 -35.16282 -34.82507 -33.90857 -32.09873 -30.00704 -29.77032 -26.82911 -26.08269 -25.64004 -23.66117 -22.22617 -21.85518 -21.72711 -19.62033 -18.95411 -18.68853 -16.98580 -16.61939 -16.49584 -16.01950 -15.85862 -15.35877 -15.23773 -14.82381 -14.53369 -14.31064 -14.06862 -13.89141 -13.68433 -13.49000 -13.25499 -13.08492 -12.95563 -12.42308 -12.33935 -12.19397 -11.91483 -11.89289 -11.82228 -11.44543 -11.38956 -11.04480 -11.01019 -10.44652 -10.23419 -9.47374 -9.10445 -8.63462 -6.29357 -0.15403 0.06338 1.50936 1.56833 1.73283 2.18063 2.55390 2.62056 3.06175 3.12280 3.50797 3.58956 3.68568 3.77885 3.82147 3.87233 3.99267 4.08036 4.24952 4.46068 4.50121 4.60383 4.64254 4.72539 4.75672 4.82822 4.83792 4.89362 4.92148 5.01495 5.10094 5.11937 5.20899 5.23827 5.48274 5.53974 5.66934 5.87069 6.10912 6.11913 6.41246 6.66837 6.77408 7.04078 7.49699 8.69448 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.044173 B = 0.003146 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.716571 B = 8898.619559 C = 9109.172829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.191 3.809 3 H 0.038 0.962 4 C -0.585 4.585 5 H 0.014 0.986 6 C -0.028 4.028 7 N -0.948 5.948 8 Si 1.087 2.913 9 H -0.276 1.276 10 H -0.231 1.231 11 H -0.292 1.292 12 N -0.686 5.686 13 C 0.113 3.887 14 C -0.203 4.203 15 C 0.181 3.819 16 N -0.563 5.563 17 C 0.462 3.538 18 N -0.461 5.461 19 C 0.053 3.947 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.034 3.966 23 N -0.542 5.542 24 C 0.174 3.826 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.250 0.750 29 H 0.331 0.669 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.181 0.819 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 3.193 -26.540 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.081 3.919 3 H 0.056 0.944 4 C -0.623 4.623 5 H 0.032 0.968 6 C -0.224 4.224 7 N -0.585 5.585 8 Si 0.908 3.092 9 H -0.202 1.202 10 H -0.154 1.154 11 H -0.218 1.218 12 N -0.316 5.316 13 C -0.017 4.017 14 C -0.209 4.209 15 C 0.014 3.986 16 N -0.282 5.282 17 C 0.106 3.894 18 N -0.182 5.182 19 C -0.073 4.073 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.093 4.093 23 N -0.259 5.259 24 C 0.006 3.994 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.198 0.802 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.825 3.375 -26.096 26.465 hybrid contribution -0.414 -0.802 0.345 0.967 sum 2.410 2.572 -25.751 25.992 Atomic orbital electron populations 1.22727 0.99072 1.00461 1.00868 1.19389 0.90376 0.94238 0.87855 0.94418 1.22233 1.37768 1.09341 0.92958 0.96796 1.27255 0.94354 1.09066 0.91748 1.70935 1.47827 1.07581 1.32113 0.83621 0.77547 0.70740 0.77331 1.20226 1.15415 1.21797 1.60611 1.58455 1.09448 1.03134 1.20714 1.00377 0.94223 0.86415 1.21517 0.95799 1.04011 0.99526 1.23296 0.94647 0.90098 0.90553 1.68346 1.39664 1.12177 1.08007 1.21503 0.86133 0.88277 0.93528 1.61386 1.10384 1.45813 1.00655 1.23299 1.00968 0.96852 0.86169 1.22555 0.92823 1.03096 0.96870 1.22456 0.98083 1.04007 0.91798 1.23004 0.84039 1.03226 0.98985 1.68067 1.14666 1.20715 1.22485 1.23432 1.01738 0.87473 0.86736 0.92167 0.94000 0.93567 0.94170 0.85221 0.92568 0.89747 0.80222 0.88904 0.93613 0.88113 0.89694 0.89910 0.89130 0.90958 0.90536 0.79185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.58 8.45 71.98 0.61 -5.98 16 2 C 0.19 8.29 2.12 44.17 0.09 8.38 16 3 H 0.04 1.60 6.43 -2.38 -0.02 1.58 16 4 C -0.58 -32.89 9.12 25.60 0.23 -32.65 16 5 H 0.01 0.88 8.06 -2.91 -0.02 0.86 16 6 C -0.03 -1.59 5.33 84.66 0.45 -1.14 16 7 N -0.95 -60.05 13.70 21.45 0.29 -59.76 16 8 Si 1.09 48.28 26.17 68.60 1.80 50.07 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.23 -8.61 5.53 99.48 0.55 -8.06 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 N -0.69 -25.85 6.22 -499.48 -3.11 -28.95 16 13 C 0.11 3.15 5.66 85.56 0.48 3.63 16 14 C -0.20 -5.43 5.43 -19.69 -0.11 -5.54 16 15 C 0.18 5.02 11.00 84.71 0.93 5.95 16 16 N -0.56 -16.52 8.15 -197.99 -1.61 -18.14 16 17 C 0.46 13.48 6.98 261.48 1.83 15.31 16 18 N -0.46 -11.48 5.35 -696.23 -3.73 -15.21 16 19 C 0.05 0.98 6.31 86.65 0.55 1.53 16 20 C -0.12 -1.39 7.06 31.80 0.22 -1.17 16 21 C -0.13 -1.63 6.93 31.48 0.22 -1.41 16 22 C 0.03 0.72 6.34 86.45 0.55 1.26 16 23 N -0.54 -15.70 10.21 -197.98 -2.02 -17.72 16 24 C 0.17 4.45 11.00 84.71 0.93 5.39 16 25 H 0.06 1.84 7.63 -2.39 -0.02 1.82 16 26 H 0.04 1.60 8.01 -2.38 -0.02 1.58 16 27 H 0.05 1.85 5.06 -2.39 -0.01 1.84 16 28 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 29 H 0.33 12.23 8.38 -89.69 -0.75 11.48 16 30 H 0.06 1.36 7.52 -2.39 -0.02 1.34 16 31 H 0.08 2.30 8.01 -2.39 -0.02 2.28 16 32 H 0.18 4.44 8.06 -2.91 -0.02 4.41 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 0.89 7.99 -2.39 -0.02 0.87 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.69 6.46 -2.39 -0.02 1.67 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -70.67 328.53 -1.31 -71.98 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.08 Total: 24.16 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 6.99 Total: -6.43 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -10.18 Total: -139.79 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.80 Total: 50.07 kcal Total: -70.67 -1.31 -71.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658513539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.187 kcal (2) G-P(sol) polarization free energy of solvation -70.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds