Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.76192 * 102.99967 * 180.02562 * 11 10 9 13 13 C 1.39198 * 119.71408 * 179.72516 * 12 11 10 14 14 C 1.38272 * 119.09511 * 179.77203 * 13 12 11 15 15 C 1.38905 * 118.51246 * 0.48931 * 14 13 12 16 16 C 1.50698 * 120.32885 * 179.77021 * 15 14 13 17 17 F 1.39899 * 109.47110 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47243 * 299.98312 * 16 15 14 19 19 F 1.39898 * 109.47230 * 59.98506 * 16 15 14 20 20 C 1.38025 * 119.34096 * 359.75779 * 15 14 13 21 21 N 1.31960 * 120.86116 * 359.97438 * 20 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.08008 * 120.44859 * 0.02562 * 13 12 11 28 28 H 1.08000 * 120.74135 * 180.24655 * 14 13 12 29 29 H 1.08002 * 119.57110 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 6 2.6270 -6.4347 0.0006 13 6 2.3071 -7.7894 0.0061 14 6 3.3285 -8.7214 0.0019 15 6 4.6411 -8.2667 0.0028 16 6 5.7859 -9.2467 0.0035 17 9 6.9979 -8.5480 0.0037 18 9 5.7108 -10.0508 1.1460 19 9 5.7118 -10.0512 -1.1386 20 6 4.8863 -6.9084 0.0026 21 7 3.8918 -6.0410 0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 1.2752 -8.1081 0.0094 28 1 3.1107 -9.7792 0.0020 29 1 5.9054 -6.5508 0.0037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019847619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -132.773959 kcal Electronic energy + Delta-G solvation = -18067.039590 eV Core-core repulsion = 14472.893679 eV Total energy + Delta-G solvation = -3594.145911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.044 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.37814 -47.90214 -47.83693 -40.24327 -33.81319 -33.26734 -32.04237 -30.94646 -26.72175 -25.34242 -24.01150 -22.93316 -21.19693 -18.82293 -18.71013 -18.60276 -17.80957 -16.60675 -16.50145 -15.02129 -14.82058 -14.62391 -14.53949 -14.52278 -14.45566 -14.28268 -14.04659 -14.00104 -13.63900 -13.42250 -13.16718 -12.26932 -11.97928 -11.67060 -11.10472 -10.67795 -10.60371 -10.24507 -10.16687 -9.92871 -9.84364 -9.70166 -9.20353 -8.48322 -7.47517 -6.12354 -4.16837 0.44936 0.96039 1.62676 2.43427 2.72001 3.26449 3.26871 3.33300 3.36977 3.50049 3.77712 4.20041 4.30486 4.37969 4.47382 4.74974 4.87206 5.23799 5.40414 5.54741 5.60727 5.93979 6.13070 6.16160 6.62532 7.43826 7.49861 7.50106 7.83025 8.19442 8.87670 9.47640 10.98493 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.003360 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.274297 B = 8331.583601 C = 8957.752882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.073 4.073 11 S -0.071 6.071 12 C 0.155 3.845 13 C -0.163 4.163 14 C -0.007 4.007 15 C -0.270 4.270 16 C 0.520 3.480 17 F -0.176 7.176 18 F -0.178 7.178 19 F -0.178 7.178 20 C 0.174 3.826 21 N -0.486 5.486 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -19.447 0.012 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.221 4.221 11 S 0.177 5.823 12 C -0.093 4.093 13 C -0.190 4.190 14 C -0.035 4.035 15 C -0.278 4.278 16 C 0.465 3.535 17 F -0.158 7.158 18 F -0.159 7.159 19 F -0.159 7.159 20 C 0.011 3.989 21 N -0.199 5.199 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.168 0.832 28 H 0.164 0.836 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.862 -18.457 0.016 19.691 hybrid contribution 1.839 -0.042 -0.011 1.839 sum 8.701 -18.499 0.005 20.443 Atomic orbital electron populations 1.69958 1.06085 1.27012 1.49916 1.25015 0.94932 0.99396 0.94931 0.86484 0.79783 0.82890 0.78230 1.20510 1.21081 1.19731 1.21045 0.93157 0.89880 1.51879 0.92170 1.18996 0.93425 0.89534 0.98553 1.23995 1.01826 0.90872 1.05397 1.85887 1.08793 1.00596 1.87056 1.23889 0.95872 0.96481 0.93089 1.21686 1.00936 0.91502 1.04869 1.21154 0.90469 1.00689 0.91179 1.20811 0.93997 0.95556 1.17442 1.18037 0.81941 0.79797 0.73715 1.93170 1.47618 1.78749 1.96234 1.93218 1.96361 1.75205 1.51128 1.93216 1.96367 1.75184 1.51149 1.22691 0.99408 0.87495 0.89268 1.68451 0.98691 1.37165 1.15595 0.92708 0.95464 0.95442 0.89847 0.89839 0.83211 0.83631 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.03 0.85 4.98 -27.88 -0.14 0.71 15 10 C -0.07 -1.49 5.14 37.16 0.19 -1.30 15 11 S -0.07 -1.22 21.91 -107.50 -2.36 -3.58 15 12 C 0.15 2.33 7.00 -16.92 -0.12 2.21 15 13 C -0.16 -1.91 9.84 -39.21 -0.39 -2.30 15 14 C -0.01 -0.08 9.76 -39.32 -0.38 -0.46 15 15 C -0.27 -2.99 5.38 -104.45 -0.56 -3.55 15 16 C 0.52 5.31 3.33 36.00 0.12 5.43 15 17 F -0.18 -1.83 15.99 2.25 0.04 -1.79 15 18 F -0.18 -1.84 17.25 2.25 0.04 -1.80 15 19 F -0.18 -1.84 17.25 2.25 0.04 -1.80 15 20 C 0.17 2.19 10.59 -17.57 -0.19 2.00 15 21 N -0.49 -7.54 9.43 -12.11 -0.11 -7.66 15 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 23 H 0.03 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.08 1.71 8.14 -51.92 -0.42 1.28 15 26 H 0.08 1.71 8.14 -51.92 -0.42 1.29 15 27 H 0.15 1.42 8.06 -52.48 -0.42 0.99 15 28 H 0.15 1.04 8.06 -52.49 -0.42 0.62 15 29 H 0.17 1.76 7.15 -52.49 -0.38 1.38 15 LS Contribution 288.44 15.07 4.35 4.35 Total: -1.00 -28.99 288.44 -6.62 -35.61 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -2.45 Total: -3.95 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.88 Total: -10.22 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.62 Total: -32.92 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.36 Total: -3.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.99 -6.62 -35.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.161 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds