Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.76192 * 102.99967 * 180.02562 * 11 10 9 13 13 C 1.39198 * 119.71408 * 179.72516 * 12 11 10 14 14 C 1.38272 * 119.09511 * 179.77203 * 13 12 11 15 15 C 1.38905 * 118.51246 * 0.48931 * 14 13 12 16 16 C 1.50698 * 120.32885 * 179.77021 * 15 14 13 17 17 F 1.39899 * 109.47110 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47243 * 299.98312 * 16 15 14 19 19 F 1.39898 * 109.47230 * 59.98506 * 16 15 14 20 20 C 1.38025 * 119.34096 * 359.75779 * 15 14 13 21 21 N 1.31960 * 120.86116 * 359.97438 * 20 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.08008 * 120.44859 * 0.02562 * 13 12 11 28 28 H 1.08000 * 120.74135 * 180.24655 * 14 13 12 29 29 H 1.08002 * 119.57110 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 6 2.6270 -6.4347 0.0006 13 6 2.3071 -7.7894 0.0061 14 6 3.3285 -8.7214 0.0019 15 6 4.6411 -8.2667 0.0028 16 6 5.7859 -9.2467 0.0035 17 9 6.9979 -8.5480 0.0037 18 9 5.7108 -10.0508 1.1460 19 9 5.7118 -10.0512 -1.1386 20 6 4.8863 -6.9084 0.0026 21 7 3.8918 -6.0410 0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 1.2752 -8.1081 0.0094 28 1 3.1107 -9.7792 0.0020 29 1 5.9054 -6.5508 0.0037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019847619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -148.450487 kcal Electronic energy + Delta-G solvation = -18067.719375 eV Core-core repulsion = 14472.893679 eV Total energy + Delta-G solvation = -3594.825696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.044 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.20314 -48.72575 -48.65719 -41.24760 -35.82676 -34.27809 -33.06960 -32.86932 -27.76033 -27.22623 -24.99904 -23.99112 -22.99358 -19.70680 -19.52806 -19.45529 -18.90742 -18.69595 -17.51176 -16.53773 -16.12562 -15.90173 -15.72628 -15.57691 -15.35742 -15.12289 -15.08819 -14.87111 -14.81528 -14.66100 -14.29109 -13.89233 -13.60977 -12.97847 -12.95086 -12.47092 -12.29607 -11.79998 -11.63773 -11.43302 -11.18437 -10.98226 -10.80176 -10.61448 -8.77626 -8.24889 -6.37421 -0.54177 0.03847 0.37137 1.24036 1.41730 1.42161 1.53781 1.58398 2.27517 2.39903 2.64108 2.93207 3.08803 3.34773 3.36888 3.65014 3.78193 3.98544 4.21402 4.35821 4.53462 4.63674 4.73486 4.82374 5.23719 5.35176 5.44437 5.71390 6.09666 6.47672 6.75327 7.31777 8.86631 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.003360 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.274297 B = 8331.583601 C = 8957.752882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.041 3.959 10 C -0.061 4.061 11 S -0.077 6.077 12 C 0.133 3.867 13 C -0.153 4.153 14 C 0.004 3.996 15 C -0.259 4.259 16 C 0.529 3.471 17 F -0.177 7.177 18 F -0.175 7.175 19 F -0.175 7.175 20 C 0.162 3.838 21 N -0.518 5.518 22 H 0.266 0.734 23 H 0.004 0.996 24 H 0.004 0.996 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.175 0.825 28 H 0.185 0.815 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 -21.118 0.008 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.002 3.998 10 C -0.210 4.210 11 S 0.169 5.831 12 C -0.115 4.115 13 C -0.179 4.179 14 C -0.024 4.024 15 C -0.267 4.267 16 C 0.474 3.526 17 F -0.158 7.158 18 F -0.157 7.157 19 F -0.157 7.157 20 C 0.000 4.000 21 N -0.230 5.230 22 H 0.075 0.925 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.192 0.808 28 H 0.202 0.798 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.166 -20.147 0.011 21.739 hybrid contribution 1.519 0.267 -0.010 1.543 sum 9.685 -19.880 0.001 22.114 Atomic orbital electron populations 1.70082 1.07735 1.28112 1.50826 1.25963 0.95828 1.03327 0.94359 0.85379 0.78595 0.78095 0.78576 1.19678 1.20551 1.18780 1.21477 0.93607 0.91309 1.51705 0.91833 1.18757 0.93615 0.91174 0.96217 1.23471 1.00600 0.92033 1.04846 1.85647 1.09419 0.99193 1.88840 1.23738 0.95242 0.96816 0.95677 1.21949 1.02721 0.90003 1.03246 1.21602 0.89399 1.02293 0.89068 1.20982 0.94976 0.95182 1.15577 1.17816 0.81529 0.79528 0.73775 1.93177 1.47610 1.78792 1.96232 1.93230 1.96329 1.75071 1.51036 1.93228 1.96336 1.75050 1.51057 1.22946 0.99449 0.88067 0.89509 1.68319 0.99394 1.38788 1.16535 0.92478 0.97746 0.97724 0.90329 0.90340 0.80807 0.79759 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.16 15 2 C 0.00 0.23 5.46 84.66 0.46 0.69 15 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 15 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 15 7 C -0.54 -30.41 9.11 25.60 0.23 -30.17 15 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 15 9 C 0.04 2.15 4.98 29.85 0.15 2.30 15 10 C -0.06 -2.59 5.14 71.98 0.37 -2.22 15 11 S -0.08 -2.68 21.91 -56.49 -1.24 -3.92 15 12 C 0.13 3.87 7.00 84.83 0.59 4.46 15 13 C -0.15 -3.16 9.84 22.51 0.22 -2.94 15 14 C 0.00 0.06 9.76 22.44 0.22 0.28 15 15 C -0.26 -5.01 5.38 -19.76 -0.11 -5.11 15 16 C 0.53 9.19 3.33 71.24 0.24 9.42 15 17 F -0.18 -3.23 15.99 44.97 0.72 -2.51 15 18 F -0.18 -3.07 17.25 44.97 0.78 -2.29 15 19 F -0.18 -3.07 17.25 44.97 0.78 -2.29 15 20 C 0.16 3.81 10.59 84.62 0.90 4.71 15 21 N -0.52 -15.69 9.43 -192.22 -1.81 -17.50 15 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 23 H 0.00 0.23 8.14 -2.39 -0.02 0.21 15 24 H 0.00 0.25 8.14 -2.39 -0.02 0.23 15 25 H 0.08 3.33 8.14 -2.39 -0.02 3.31 15 26 H 0.08 3.33 8.14 -2.39 -0.02 3.31 15 27 H 0.17 2.71 8.06 -2.91 -0.02 2.68 15 28 H 0.19 1.66 8.06 -2.91 -0.02 1.64 15 29 H 0.18 3.55 7.15 -2.91 -0.02 3.53 15 Total: -1.00 -63.50 288.44 5.99 -57.51 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: 1.18 Total: -0.89 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.27 Total: -18.58 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.53 Total: -72.66 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 2.27 Total: -7.10 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -1.24 Total: -3.92 kcal Total: -63.50 5.99 -57.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.940 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds