Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47165 * 270.00026 * 3 2 1 5 5 H 1.48505 * 109.46739 * 29.99527 * 3 2 1 6 6 H 1.48492 * 109.47356 * 149.99550 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00178 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.39829 * 71.33420 * 9 7 2 11 11 O 1.42099 * 106.40439 * 298.41835 * 9 7 2 12 12 N 1.65591 * 107.21944 * 184.87079 * 9 7 2 13 13 C 1.39623 * 119.99868 * 64.24621 * 12 9 7 14 14 C 1.40037 * 119.66302 * 75.49002 * 13 12 9 15 15 C 1.35902 * 120.91620 * 180.28523 * 14 13 12 16 16 C 1.40602 * 119.90837 * 359.69937 * 15 14 13 17 17 C 1.40535 * 121.13451 * 180.02562 * 16 15 14 18 18 C 1.36105 * 119.69226 * 180.02562 * 17 16 15 19 19 C 1.39370 * 120.99914 * 359.95570 * 18 17 16 20 20 C 1.36089 * 120.96847 * 0.02562 * 19 18 17 21 21 C 1.40597 * 119.66126 * 359.97438 * 20 19 18 22 22 C 1.37743 * 119.66554 * 255.18965 * 13 12 9 23 23 H 0.96999 * 119.99820 * 0.02562 * 1 2 3 24 24 H 0.97002 * 120.00532 * 244.23897 * 12 9 7 25 25 H 1.08004 * 119.54592 * 359.97438 * 14 13 12 26 26 H 1.08000 * 120.04608 * 179.72129 * 15 14 13 27 27 H 1.07999 * 120.15573 * 0.02562 * 17 16 15 28 28 H 1.07994 * 119.49928 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.51752 * 180.02562 * 19 18 17 30 30 H 1.08002 * 120.16796 * 180.02562 * 20 19 18 31 31 H 1.08004 * 120.24432 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.5456 -2.8496 -1.2912 11 8 0.3606 -2.7429 1.1991 12 7 2.2432 -3.9325 0.1355 13 6 3.0199 -4.0400 1.2908 14 6 2.4496 -4.5486 2.4644 15 6 3.1805 -4.6590 3.6049 16 6 4.5302 -4.2652 3.6134 17 6 5.3100 -4.3688 4.7780 18 6 6.6136 -3.9785 4.7534 19 6 7.1909 -3.4769 3.5883 20 6 6.4672 -3.3624 2.4414 21 6 5.1174 -3.7555 2.4283 22 6 4.3408 -3.6506 1.2630 23 1 -0.4850 0.8401 -0.0004 24 1 2.3595 -4.5681 -0.5879 25 1 1.4133 -4.8526 2.4646 26 1 2.7252 -5.0489 4.5032 27 1 4.8768 -4.7562 5.6883 28 1 7.2098 -4.0590 5.6503 29 1 8.2277 -3.1747 3.5956 30 1 6.9277 -2.9724 1.5457 31 1 4.7748 -3.2635 0.3529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044880807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = -50.577547 kcal Electronic energy + Delta-G solvation = -18770.876546 eV Core-core repulsion = 15722.151679 eV Total energy + Delta-G solvation = -3048.724867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10577 -36.96896 -35.23855 -34.02816 -33.65060 -33.08415 -32.20012 -29.45245 -27.98292 -26.14725 -23.14963 -22.41682 -21.72538 -19.12611 -18.01812 -17.30228 -16.82771 -16.41695 -16.14448 -15.10761 -14.74439 -14.40070 -14.05557 -13.77610 -13.36136 -13.32875 -13.17079 -12.91058 -12.05600 -11.91131 -11.43024 -11.22581 -11.17385 -11.07135 -10.75136 -10.61443 -10.51190 -10.36301 -10.24737 -9.73454 -9.36958 -9.25878 -8.77005 -8.22362 -7.60542 -6.72104 -5.33836 0.72120 1.19089 2.16719 2.33274 3.06402 3.12772 3.18201 3.21162 4.04624 4.31538 4.60850 4.63143 4.79451 4.96876 5.08250 5.27579 5.34520 5.50536 5.55854 5.64540 5.72048 5.91989 6.00255 6.14319 6.37176 6.41775 6.52749 6.58492 6.63972 6.78705 6.89885 7.02663 7.19998 7.31878 7.85238 7.94991 8.87328 10.22325 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.006518 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.191447 B = 4295.022978 C = 5100.692191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.015 5.015 8 H 0.103 0.897 9 S 2.706 3.294 10 O -1.003 7.003 11 O -0.993 6.993 12 N -1.089 6.089 13 C 0.171 3.829 14 C -0.099 4.099 15 C -0.106 4.106 16 C -0.055 4.055 17 C -0.104 4.104 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.044 4.044 22 C -0.110 4.110 23 H 0.291 0.709 24 H 0.410 0.590 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 -7.327 6.808 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.148 5.148 8 H 0.121 0.879 9 S 2.808 3.192 10 O -0.994 6.994 11 O -0.983 6.983 12 N -0.839 5.839 13 C 0.075 3.925 14 C -0.119 4.119 15 C -0.125 4.125 16 C -0.055 4.055 17 C -0.122 4.122 18 C -0.143 4.143 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.045 4.045 22 C -0.131 4.131 23 H 0.101 0.899 24 H 0.245 0.755 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.863 -7.277 6.847 14.760 hybrid contribution 0.990 1.060 -0.333 1.488 sum 11.853 -6.217 6.514 14.886 Atomic orbital electron populations 1.69894 1.06755 1.30766 1.40017 1.24727 0.94465 1.00777 0.88440 0.86172 0.80287 0.80023 0.79191 1.19139 1.19917 1.18557 1.30439 1.06109 1.11373 1.66914 0.87869 1.00826 0.72137 0.73309 0.72959 1.93390 1.76084 1.87383 1.42520 1.93367 1.68728 1.87192 1.49029 1.53910 1.57956 1.48564 1.23447 1.17214 0.90248 0.97926 0.87066 1.21306 1.00760 0.97346 0.92468 1.20848 0.92735 1.00795 0.98130 1.18114 0.94181 0.99768 0.93421 1.20991 0.94154 0.99975 0.97076 1.20763 0.95414 1.00109 0.98062 1.20761 0.99849 1.00570 0.93120 1.21038 0.92976 0.99335 0.98615 1.17948 0.93985 0.99411 0.93139 1.21578 0.93820 0.99816 0.97917 0.89853 0.75468 0.84829 0.85341 0.85809 0.86424 0.86364 0.85668 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.82 13.10 55.43 0.73 -24.10 16 2 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 3 Si 0.92 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -1.01 -27.93 9.66 30.60 0.30 -27.64 16 8 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 9 S 2.71 71.40 5.02 -107.50 -0.54 70.86 16 10 O -1.00 -29.00 18.02 -57.17 -1.03 -30.03 16 11 O -0.99 -28.65 16.95 -57.17 -0.97 -29.62 16 12 N -1.09 -21.81 5.67 32.40 0.18 -21.62 16 13 C 0.17 3.22 5.78 -83.82 -0.48 2.74 16 14 C -0.10 -1.76 9.18 -39.75 -0.36 -2.12 16 15 C -0.11 -1.63 9.74 -39.53 -0.39 -2.01 16 16 C -0.05 -0.83 5.74 -106.80 -0.61 -1.44 16 17 C -0.10 -1.29 9.76 -39.48 -0.39 -1.67 16 18 C -0.13 -1.41 9.95 -39.93 -0.40 -1.80 16 19 C -0.12 -1.44 9.95 -39.93 -0.40 -1.84 16 20 C -0.10 -1.34 9.77 -39.46 -0.39 -1.73 16 21 C -0.04 -0.69 5.74 -106.84 -0.61 -1.31 16 22 C -0.11 -1.88 9.72 -38.94 -0.38 -2.25 16 23 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.41 6.85 8.95 -34.47 -0.31 6.54 16 25 H 0.13 2.37 7.94 -52.48 -0.42 1.95 16 26 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 2.06 8.06 -52.48 -0.42 1.63 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -35.00 291.42 -9.27 -44.27 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -2.81 Total: 7.56 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -4.21 Total: -37.42 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.91 Total: -45.72 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -2.00 Total: -59.64 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 71.40 SS G_CDS: -0.54 Total: 70.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.00 -9.27 -44.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044880807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.308 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds