Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47165 * 270.00026 * 3 2 1 5 5 H 1.48505 * 109.46739 * 29.99527 * 3 2 1 6 6 H 1.48492 * 109.47356 * 149.99550 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00178 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.39829 * 71.33420 * 9 7 2 11 11 O 1.42099 * 106.40439 * 298.41835 * 9 7 2 12 12 N 1.65591 * 107.21944 * 184.87079 * 9 7 2 13 13 C 1.39623 * 119.99868 * 64.24621 * 12 9 7 14 14 C 1.40037 * 119.66302 * 75.49002 * 13 12 9 15 15 C 1.35902 * 120.91620 * 180.28523 * 14 13 12 16 16 C 1.40602 * 119.90837 * 359.69937 * 15 14 13 17 17 C 1.40535 * 121.13451 * 180.02562 * 16 15 14 18 18 C 1.36105 * 119.69226 * 180.02562 * 17 16 15 19 19 C 1.39370 * 120.99914 * 359.95570 * 18 17 16 20 20 C 1.36089 * 120.96847 * 0.02562 * 19 18 17 21 21 C 1.40597 * 119.66126 * 359.97438 * 20 19 18 22 22 C 1.37743 * 119.66554 * 255.18965 * 13 12 9 23 23 H 0.96999 * 119.99820 * 0.02562 * 1 2 3 24 24 H 0.97002 * 120.00532 * 244.23897 * 12 9 7 25 25 H 1.08004 * 119.54592 * 359.97438 * 14 13 12 26 26 H 1.08000 * 120.04608 * 179.72129 * 15 14 13 27 27 H 1.07999 * 120.15573 * 0.02562 * 17 16 15 28 28 H 1.07994 * 119.49928 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.51752 * 180.02562 * 19 18 17 30 30 H 1.08002 * 120.16796 * 180.02562 * 20 19 18 31 31 H 1.08004 * 120.24432 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.5456 -2.8496 -1.2912 11 8 0.3606 -2.7429 1.1991 12 7 2.2432 -3.9325 0.1355 13 6 3.0199 -4.0400 1.2908 14 6 2.4496 -4.5486 2.4644 15 6 3.1805 -4.6590 3.6049 16 6 4.5302 -4.2652 3.6134 17 6 5.3100 -4.3688 4.7780 18 6 6.6136 -3.9785 4.7534 19 6 7.1909 -3.4769 3.5883 20 6 6.4672 -3.3624 2.4414 21 6 5.1174 -3.7555 2.4283 22 6 4.3408 -3.6506 1.2630 23 1 -0.4850 0.8401 -0.0004 24 1 2.3595 -4.5681 -0.5879 25 1 1.4133 -4.8526 2.4646 26 1 2.7252 -5.0489 4.5032 27 1 4.8768 -4.7562 5.6883 28 1 7.2098 -4.0590 5.6503 29 1 8.2277 -3.1747 3.5956 30 1 6.9277 -2.9724 1.5457 31 1 4.7748 -3.2635 0.3529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044880807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = -75.610719 kcal Electronic energy + Delta-G solvation = -18771.962065 eV Core-core repulsion = 15722.151679 eV Total energy + Delta-G solvation = -3049.810386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22941 -38.22191 -37.39221 -36.21225 -35.26902 -34.88782 -33.32659 -30.57133 -29.20505 -28.28193 -24.27347 -23.62083 -22.80984 -21.13738 -19.66869 -18.85640 -18.37789 -17.93947 -17.46399 -17.02465 -16.06695 -15.95675 -15.59206 -15.45114 -14.71750 -14.48329 -14.26567 -14.06701 -13.96322 -13.39828 -13.10883 -13.03419 -12.86328 -12.57852 -12.48214 -12.33103 -12.15501 -11.91697 -11.80245 -11.26886 -11.12843 -10.88549 -10.61521 -9.41508 -8.80453 -8.71434 -7.50985 -0.41149 -0.02085 0.34858 1.16533 1.31680 1.32415 1.48459 2.06863 2.18436 2.55639 2.84542 3.20889 3.61208 3.77162 3.99346 4.07713 4.15275 4.27661 4.38347 4.45636 4.51830 4.56976 4.75307 4.95857 5.04037 5.20146 5.27954 5.32649 5.38673 5.54020 5.66715 5.70179 5.85161 5.91999 6.12024 6.35994 6.75329 8.18579 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.006518 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.191447 B = 4295.022978 C = 5100.692191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.249 1.249 7 C -1.034 5.034 8 H 0.119 0.881 9 S 2.714 3.286 10 O -1.040 7.040 11 O -1.028 7.028 12 N -1.072 6.072 13 C 0.133 3.867 14 C -0.132 4.132 15 C -0.097 4.097 16 C -0.071 4.071 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.064 4.064 22 C -0.111 4.111 23 H 0.299 0.701 24 H 0.423 0.577 25 H 0.120 0.880 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.569 -6.589 8.721 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.172 1.172 7 C -1.168 5.168 8 H 0.137 0.863 9 S 2.817 3.183 10 O -1.031 7.031 11 O -1.018 7.018 12 N -0.826 5.826 13 C 0.038 3.962 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.071 4.071 17 C -0.129 4.129 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.065 4.065 22 C -0.133 4.133 23 H 0.110 0.890 24 H 0.260 0.740 25 H 0.138 0.862 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.358 -6.569 8.748 18.051 hybrid contribution 0.093 0.718 -0.786 1.069 sum 14.452 -5.850 7.963 17.507 Atomic orbital electron populations 1.69986 1.08692 1.32368 1.41294 1.25988 0.95388 1.05240 0.87508 0.85167 0.79198 0.74874 0.80215 1.17571 1.18562 1.17197 1.30778 1.07068 1.12141 1.66783 0.86323 1.00252 0.72547 0.73893 0.71656 1.93326 1.77723 1.88130 1.43889 1.93311 1.70508 1.87939 1.49999 1.53114 1.57301 1.47432 1.24744 1.17446 0.91070 1.00907 0.86758 1.21316 1.00698 0.99713 0.93512 1.21180 0.92981 0.99290 0.98060 1.18448 0.94338 0.99835 0.94499 1.21328 0.94637 0.99964 0.96947 1.21265 0.95142 0.97822 0.99237 1.21238 1.01226 0.98467 0.92327 1.21288 0.92048 0.99992 1.00327 1.18234 0.95252 1.00133 0.92881 1.21729 0.93226 0.99234 0.99063 0.89038 0.73957 0.86180 0.82476 0.83117 0.82804 0.83055 0.84150 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.71 13.10 21.45 0.28 -53.43 16 2 C 0.07 4.05 5.46 84.65 0.46 4.51 16 3 Si 0.99 41.77 29.54 68.60 2.03 43.80 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 7 C -1.03 -57.90 9.66 67.73 0.65 -57.24 16 8 H 0.12 6.03 7.81 -2.91 -0.02 6.01 16 9 S 2.71 149.31 5.02 -56.49 -0.28 149.03 16 10 O -1.04 -62.85 18.02 -128.00 -2.31 -65.16 16 11 O -1.03 -62.26 16.95 -128.00 -2.17 -64.43 16 12 N -1.07 -44.89 5.67 -51.41 -0.29 -45.18 16 13 C 0.13 5.17 5.78 38.22 0.22 5.39 16 14 C -0.13 -4.88 9.18 22.16 0.20 -4.68 16 15 C -0.10 -2.91 9.74 22.30 0.22 -2.69 16 16 C -0.07 -2.02 5.74 -21.28 -0.12 -2.14 16 17 C -0.11 -2.33 9.76 22.33 0.22 -2.11 16 18 C -0.12 -2.04 9.95 22.05 0.22 -1.82 16 19 C -0.11 -2.12 9.95 22.04 0.22 -1.90 16 20 C -0.12 -2.81 9.77 22.35 0.22 -2.59 16 21 C -0.06 -1.94 5.74 -21.30 -0.12 -2.06 16 22 C -0.11 -3.80 9.72 22.69 0.22 -3.58 16 23 H 0.30 16.15 8.31 -92.71 -0.77 15.38 16 24 H 0.42 14.89 8.95 -96.74 -0.87 14.02 16 25 H 0.12 4.59 7.94 -2.91 -0.02 4.57 16 26 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 28 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 31 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -78.33 291.42 0.16 -78.17 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.30 Total: 28.14 kcal Atomic # 6 Polarization: -73.53 SS G_CDS: 2.61 Total: -70.92 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -0.01 Total: -98.61 kcal Atomic # 8 Polarization: -125.12 SS G_CDS: -4.48 Total: -129.59 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 149.31 SS G_CDS: -0.28 Total: 149.03 kcal Total: -78.33 0.16 -78.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044880807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.560 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds