Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36929 * 120.00104 * 2 1 4 4 H 1.08009 * 120.00054 * 202.36914 * 3 2 1 5 5 C 1.38813 * 120.00338 * 22.37352 * 3 2 1 6 6 N 1.31621 * 119.99463 * 11.11233 * 5 3 2 7 7 Si 1.86793 * 120.00208 * 191.11691 * 5 3 2 8 8 H 1.48506 * 109.47276 * 89.99845 * 7 5 3 9 9 H 1.48502 * 109.47346 * 209.99839 * 7 5 3 10 10 H 1.48500 * 109.47367 * 329.99776 * 7 5 3 11 11 S 1.65607 * 119.99862 * 180.02562 * 2 1 3 12 12 O 1.42100 * 106.40265 * 156.45932 * 11 2 1 13 13 O 1.42101 * 106.40220 * 23.53886 * 11 2 1 14 14 C 1.76197 * 107.21583 * 269.99860 * 11 2 1 15 15 C 1.38232 * 119.98650 * 115.23642 * 14 11 2 16 16 C 1.38189 * 120.04962 * 180.22841 * 15 14 11 17 17 C 1.38488 * 120.02674 * 359.79103 * 16 15 14 18 18 F 1.35099 * 120.01506 * 180.02562 * 17 16 15 19 19 C 1.38398 * 119.97282 * 359.97438 * 17 16 15 20 20 C 1.38441 * 119.95313 * 0.02562 * 19 17 16 21 21 F 1.35096 * 120.01648 * 179.97438 * 20 19 17 22 22 H 1.09001 * 109.46759 * 274.21644 * 1 2 3 23 23 H 1.08994 * 109.47191 * 34.21360 * 1 2 3 24 24 H 1.08997 * 109.47404 * 154.21705 * 1 2 3 25 25 H 0.96997 * 119.99490 * 180.02562 * 6 5 3 26 26 H 1.07999 * 119.97778 * 359.96876 * 15 14 11 27 27 H 1.08003 * 119.98492 * 179.75984 * 16 15 14 28 28 H 1.08009 * 120.02537 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3560 5 6 1.5341 2.3428 0.4576 6 7 0.3824 2.2691 1.0905 7 14 2.3400 4.0041 0.1749 8 1 1.8757 4.5658 -1.1191 9 1 1.9695 4.9279 1.2769 10 1 3.8155 3.8393 0.1421 11 16 2.2930 -1.4342 -0.0006 12 8 3.5760 -1.1567 -0.5450 13 8 1.4113 -2.4063 -0.5455 14 6 2.5538 -1.8866 1.6822 15 6 1.9619 -3.0277 2.1905 16 6 2.1617 -3.3811 3.5114 17 6 2.9588 -2.5947 4.3263 18 9 3.1545 -2.9407 5.6175 19 6 3.5559 -1.4547 3.8171 20 6 3.3550 -1.1015 2.4936 21 9 3.9368 0.0114 1.9954 22 1 -0.3633 0.0756 1.0249 23 1 -0.3633 0.8498 -0.5778 24 1 -0.3634 -0.9253 -0.4470 25 1 -0.0479 3.0776 1.4100 26 1 1.3394 -3.6411 1.5561 27 1 1.6956 -4.2708 3.9086 28 1 4.1781 -0.8409 4.4517 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = -123.780255 kcal Electronic energy + Delta-G solvation = -20061.620671 eV Core-core repulsion = 16455.491967 eV Total energy + Delta-G solvation = -3606.128704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.95561 -48.51071 -38.28012 -35.83477 -35.77057 -34.45488 -31.60427 -30.76048 -30.04940 -26.55287 -23.64736 -22.96900 -22.69615 -18.63411 -18.09973 -17.45875 -17.00930 -16.69019 -16.18124 -15.72437 -15.37771 -14.94203 -14.66660 -14.37020 -14.15207 -13.94159 -13.36646 -13.19644 -12.65704 -12.22303 -11.95550 -11.78217 -11.44005 -11.31914 -11.12639 -11.06561 -10.76143 -10.66416 -10.29732 -10.20497 -9.97300 -9.37370 -8.93842 -8.58793 -8.20941 -6.68298 -4.11668 0.95203 1.30471 1.65981 3.07867 3.11611 3.16913 3.48513 3.91030 4.05728 4.35902 4.66024 4.70963 4.78790 4.97999 5.02362 5.39462 5.74602 5.86079 6.00369 6.14923 6.24256 6.31551 6.39935 6.78703 7.00633 7.02379 7.15364 7.34571 8.18220 8.51706 9.00034 10.26496 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.008184 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.802171 B = 3420.484945 C = 4023.042599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.796 5.796 3 C -0.225 4.225 4 H 0.121 0.879 5 C 0.031 3.969 6 N -0.828 5.828 7 Si 0.930 3.070 8 H -0.271 1.271 9 H -0.279 1.279 10 H -0.260 1.260 11 S 2.510 3.490 12 O -0.977 6.977 13 O -1.000 7.000 14 C -0.705 4.705 15 C 0.016 3.984 16 C -0.194 4.194 17 C 0.151 3.849 18 F -0.136 7.136 19 C -0.220 4.220 20 C 0.228 3.772 21 F -0.105 7.105 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.277 0.723 26 H 0.152 0.848 27 H 0.140 0.860 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 -3.396 4.698 5.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.619 5.619 3 C -0.376 4.376 4 H 0.138 0.862 5 C -0.183 4.183 6 N -0.468 5.468 7 Si 0.755 3.245 8 H -0.196 1.196 9 H -0.204 1.204 10 H -0.184 1.184 11 S 2.606 3.394 12 O -0.967 6.967 13 O -0.990 6.990 14 C -0.780 4.780 15 C -0.003 4.003 16 C -0.214 4.214 17 C 0.132 3.868 18 F -0.114 7.114 19 C -0.240 4.240 20 C 0.207 3.793 21 F -0.082 7.082 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.169 0.831 27 H 0.158 0.842 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.750 -4.108 4.179 5.908 hybrid contribution 0.426 0.923 1.291 1.643 sum 1.176 -3.185 5.470 6.438 Atomic orbital electron populations 1.21373 0.78931 1.00235 1.02058 1.54359 1.13338 1.18832 1.75400 1.20209 1.01205 0.82842 1.33319 0.86195 1.25842 0.96428 1.01376 0.94633 1.70106 1.15071 1.30607 1.31043 0.85832 0.80290 0.79957 0.78441 1.19617 1.20440 1.18422 1.13048 0.74158 0.74785 0.77409 1.93370 1.41357 1.84343 1.77597 1.93309 1.65196 1.61974 1.78473 1.32727 1.07735 1.03935 1.33636 1.20679 0.93073 0.92724 0.93804 1.21232 1.03051 1.02181 0.94941 1.17390 0.96895 0.94131 0.78429 1.91498 1.93544 1.91721 1.34681 1.21031 1.07211 0.99829 0.95973 1.16688 0.89769 0.82496 0.90369 1.91668 1.81082 1.48224 1.87261 0.92831 0.90503 0.93480 0.91225 0.83073 0.84241 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.61 8.92 59.85 0.53 3.15 15 2 N -0.80 -18.87 3.31 -66.69 -0.22 -19.09 15 3 C -0.23 -5.48 8.24 -15.06 -0.12 -5.61 15 4 H 0.12 2.96 7.16 -52.48 -0.38 2.58 15 5 C 0.03 0.71 5.13 -17.43 -0.09 0.62 15 6 N -0.83 -19.42 10.57 55.49 0.59 -18.84 15 7 Si 0.93 18.21 29.57 -169.99 -5.03 13.18 15 8 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 9 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 10 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 11 S 2.51 58.75 5.30 -107.50 -0.57 58.18 15 12 O -0.98 -25.31 16.22 -57.17 -0.93 -26.24 15 13 O -1.00 -23.91 15.53 -57.17 -0.89 -24.80 15 14 C -0.71 -14.70 5.91 -39.51 -0.23 -14.93 15 15 C 0.02 0.29 9.54 -39.60 -0.38 -0.09 15 16 C -0.19 -3.01 10.02 -39.51 -0.40 -3.40 15 17 C 0.15 2.44 7.30 -39.43 -0.29 2.15 15 18 F -0.14 -2.03 17.27 2.25 0.04 -1.99 15 19 C -0.22 -3.82 10.01 -39.45 -0.39 -4.22 15 20 C 0.23 4.66 7.21 -39.43 -0.28 4.38 15 21 F -0.10 -2.30 15.06 2.25 0.03 -2.26 15 22 H 0.05 1.17 7.42 -51.93 -0.39 0.79 15 23 H 0.08 1.67 7.18 -51.93 -0.37 1.30 15 24 H 0.05 0.95 6.93 -51.93 -0.36 0.59 15 25 H 0.28 6.07 8.31 -40.82 -0.34 5.73 15 26 H 0.15 2.45 7.33 -52.49 -0.38 2.06 15 27 H 0.14 1.68 8.06 -52.48 -0.42 1.26 15 28 H 0.15 2.16 8.06 -52.48 -0.42 1.74 15 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -27.79 266.88 -6.46 -34.25 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -1.86 Total: 1.53 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.65 Total: -17.95 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.37 Total: -37.93 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.82 Total: -51.03 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: 58.75 SS G_CDS: -0.57 Total: 58.18 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.79 -6.46 -34.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.532 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds