Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36929 * 120.00104 * 2 1 4 4 H 1.08009 * 120.00054 * 202.36914 * 3 2 1 5 5 C 1.38813 * 120.00338 * 22.37352 * 3 2 1 6 6 N 1.31621 * 119.99463 * 11.11233 * 5 3 2 7 7 Si 1.86793 * 120.00208 * 191.11691 * 5 3 2 8 8 H 1.48506 * 109.47276 * 89.99845 * 7 5 3 9 9 H 1.48502 * 109.47346 * 209.99839 * 7 5 3 10 10 H 1.48500 * 109.47367 * 329.99776 * 7 5 3 11 11 S 1.65607 * 119.99862 * 180.02562 * 2 1 3 12 12 O 1.42100 * 106.40265 * 156.45932 * 11 2 1 13 13 O 1.42101 * 106.40220 * 23.53886 * 11 2 1 14 14 C 1.76197 * 107.21583 * 269.99860 * 11 2 1 15 15 C 1.38232 * 119.98650 * 115.23642 * 14 11 2 16 16 C 1.38189 * 120.04962 * 180.22841 * 15 14 11 17 17 C 1.38488 * 120.02674 * 359.79103 * 16 15 14 18 18 F 1.35099 * 120.01506 * 180.02562 * 17 16 15 19 19 C 1.38398 * 119.97282 * 359.97438 * 17 16 15 20 20 C 1.38441 * 119.95313 * 0.02562 * 19 17 16 21 21 F 1.35096 * 120.01648 * 179.97438 * 20 19 17 22 22 H 1.09001 * 109.46759 * 274.21644 * 1 2 3 23 23 H 1.08994 * 109.47191 * 34.21360 * 1 2 3 24 24 H 1.08997 * 109.47404 * 154.21705 * 1 2 3 25 25 H 0.96997 * 119.99490 * 180.02562 * 6 5 3 26 26 H 1.07999 * 119.97778 * 359.96876 * 15 14 11 27 27 H 1.08003 * 119.98492 * 179.75984 * 16 15 14 28 28 H 1.08009 * 120.02537 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3560 5 6 1.5341 2.3428 0.4576 6 7 0.3824 2.2691 1.0905 7 14 2.3400 4.0041 0.1749 8 1 1.8757 4.5658 -1.1191 9 1 1.9695 4.9279 1.2769 10 1 3.8155 3.8393 0.1421 11 16 2.2930 -1.4342 -0.0006 12 8 3.5760 -1.1567 -0.5450 13 8 1.4113 -2.4063 -0.5455 14 6 2.5538 -1.8866 1.6822 15 6 1.9619 -3.0277 2.1905 16 6 2.1617 -3.3811 3.5114 17 6 2.9588 -2.5947 4.3263 18 9 3.1545 -2.9407 5.6175 19 6 3.5559 -1.4547 3.8171 20 6 3.3550 -1.1015 2.4936 21 9 3.9368 0.0114 1.9954 22 1 -0.3633 0.0756 1.0249 23 1 -0.3633 0.8498 -0.5778 24 1 -0.3634 -0.9253 -0.4470 25 1 -0.0479 3.0776 1.4100 26 1 1.3394 -3.6411 1.5561 27 1 1.6956 -4.2708 3.9086 28 1 4.1781 -0.8409 4.4517 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = -141.399875 kcal Electronic energy + Delta-G solvation = -20062.384716 eV Core-core repulsion = 16455.491967 eV Total energy + Delta-G solvation = -3606.892748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.21614 -50.11546 -39.69441 -37.78606 -37.53931 -36.43400 -33.36573 -32.17078 -31.48685 -28.31839 -25.42095 -24.41728 -24.14394 -20.41816 -19.60922 -19.12012 -18.64466 -18.28972 -17.92404 -17.10376 -16.80611 -16.46894 -16.37914 -16.10066 -15.62905 -15.38598 -15.09757 -14.74245 -14.28261 -13.79410 -13.64435 -13.31011 -13.11013 -13.01392 -12.75732 -12.68479 -12.63959 -12.35699 -12.14313 -11.93236 -11.71260 -11.10112 -10.35546 -10.04868 -9.94773 -8.39967 -5.95014 -0.51773 -0.13760 -0.08999 1.50584 1.52902 1.62153 2.04229 2.28751 2.59598 2.67745 2.90448 3.11577 3.30761 3.43870 3.72551 3.89197 4.18812 4.44375 4.57233 4.63613 4.76553 4.86869 4.91667 5.04389 5.24687 5.37606 5.60589 5.62704 6.40117 6.74983 7.22274 8.56515 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.008184 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.802171 B = 3420.484945 C = 4023.042599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.814 5.814 3 C -0.262 4.262 4 H 0.105 0.895 5 C 0.003 3.997 6 N -0.854 5.854 7 Si 0.984 3.016 8 H -0.264 1.264 9 H -0.272 1.272 10 H -0.265 1.265 11 S 2.542 3.458 12 O -1.008 7.008 13 O -1.007 7.007 14 C -0.732 4.732 15 C 0.013 3.987 16 C -0.175 4.175 17 C 0.164 3.836 18 F -0.122 7.122 19 C -0.217 4.217 20 C 0.200 3.800 21 F -0.122 7.122 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.281 0.719 26 H 0.167 0.833 27 H 0.184 0.816 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -4.526 6.347 7.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.639 5.639 3 C -0.409 4.409 4 H 0.122 0.878 5 C -0.207 4.207 6 N -0.493 5.493 7 Si 0.806 3.194 8 H -0.189 1.189 9 H -0.197 1.197 10 H -0.189 1.189 11 S 2.641 3.359 12 O -0.998 6.998 13 O -0.997 6.997 14 C -0.812 4.812 15 C -0.006 4.006 16 C -0.194 4.194 17 C 0.144 3.856 18 F -0.101 7.101 19 C -0.237 4.237 20 C 0.179 3.821 21 F -0.101 7.101 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.185 0.815 27 H 0.201 0.799 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.532 -5.187 5.791 7.792 hybrid contribution 0.523 0.995 0.927 1.457 sum 1.055 -4.191 6.718 7.988 Atomic orbital electron populations 1.21306 0.78185 1.00543 1.01711 1.54066 1.13810 1.18559 1.77473 1.20079 1.00931 0.83867 1.36032 0.87782 1.26401 0.96772 1.03504 0.94060 1.70148 1.15873 1.31391 1.31915 0.85052 0.79086 0.76616 0.78656 1.18912 1.19708 1.18929 1.10944 0.73275 0.74279 0.77442 1.93339 1.42727 1.84914 1.78804 1.93300 1.65295 1.62019 1.79097 1.32240 1.10595 1.06419 1.31982 1.20941 0.92718 0.91698 0.95258 1.21622 1.01437 1.02827 0.93506 1.17439 0.95913 0.93392 0.78882 1.91545 1.93301 1.91444 1.33776 1.21241 1.07144 1.00513 0.94842 1.16992 0.90837 0.82504 0.91789 1.91623 1.81536 1.49209 1.87682 0.93354 0.91064 0.92294 0.90851 0.81549 0.79856 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.66 8.92 127.77 1.14 6.80 15 2 N -0.81 -39.41 3.31 -364.90 -1.21 -40.62 15 3 C -0.26 -13.12 8.24 84.04 0.69 -12.43 15 4 H 0.10 5.40 7.16 -2.91 -0.02 5.38 15 5 C 0.00 0.14 5.13 84.86 0.44 0.58 15 6 N -0.85 -40.53 10.57 21.65 0.23 -40.30 15 7 Si 0.98 37.72 29.57 68.60 2.03 39.75 15 8 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 9 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 10 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 11 S 2.54 119.84 5.30 -56.49 -0.30 119.54 15 12 O -1.01 -53.42 16.22 -128.00 -2.08 -55.49 15 13 O -1.01 -47.60 15.53 -128.00 -1.99 -49.59 15 14 C -0.73 -29.91 5.91 22.32 0.13 -29.78 15 15 C 0.01 0.42 9.54 22.26 0.21 0.63 15 16 C -0.17 -4.63 10.02 22.32 0.22 -4.41 15 17 C 0.16 4.64 7.30 22.37 0.16 4.81 15 18 F -0.12 -3.11 17.27 44.97 0.78 -2.33 15 19 C -0.22 -7.05 10.01 22.36 0.22 -6.82 15 20 C 0.20 8.06 7.21 22.37 0.16 8.22 15 21 F -0.12 -5.50 15.06 44.97 0.68 -4.82 15 22 H 0.05 2.14 7.42 -2.39 -0.02 2.12 15 23 H 0.07 3.17 7.18 -2.39 -0.02 3.16 15 24 H 0.06 2.38 6.93 -2.39 -0.02 2.37 15 25 H 0.28 12.40 8.31 -92.71 -0.77 11.62 15 26 H 0.17 4.90 7.33 -2.91 -0.02 4.88 15 27 H 0.18 3.28 8.06 -2.91 -0.02 3.26 15 28 H 0.17 4.57 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -59.61 266.88 2.73 -56.88 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.21 Total: 9.41 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 3.38 Total: -32.41 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -0.98 Total: -80.92 kcal Atomic # 8 Polarization: -101.02 SS G_CDS: -4.06 Total: -105.08 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 1.45 Total: -7.15 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 119.84 SS G_CDS: -0.30 Total: 119.54 kcal Total: -59.61 2.73 -56.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.524 kcal (2) G-P(sol) polarization free energy of solvation -59.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds