Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39641 * 120.14779 * 227.15142 * 3 2 1 5 5 C 1.37948 * 119.84317 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.15498 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.84817 * 179.97438 * 6 5 4 8 8 O 1.45206 * 109.47021 * 90.00050 * 7 6 5 9 9 C 1.34224 * 117.00077 * 180.02562 * 8 7 6 10 10 O 1.20833 * 120.00103 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00302 * 180.02562 * 9 8 7 12 12 S 1.80999 * 109.47427 * 180.02562 * 11 9 8 13 13 C 1.76202 * 100.00120 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99931 * 0.02562 * 13 12 11 15 15 C 1.38794 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31634 * 120.00193 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00246 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47035 * 89.99802 * 17 15 13 19 19 H 1.48502 * 109.47428 * 209.99683 * 17 15 13 20 20 H 1.48498 * 109.47233 * 329.99747 * 17 15 13 21 21 C 1.38368 * 120.30428 * 0.23103 * 6 5 4 22 22 C 1.37950 * 120.14752 * 359.48649 * 21 6 5 23 23 H 1.07990 * 120.07711 * 0.02562 * 4 3 2 24 24 H 1.08002 * 119.91825 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47247 * 330.00099 * 7 6 5 26 26 H 1.09001 * 109.47358 * 209.99525 * 7 6 5 27 27 H 1.09009 * 109.46972 * 299.99362 * 11 9 8 28 28 H 1.08995 * 109.47473 * 59.99636 * 11 9 8 29 29 H 0.96997 * 120.00137 * 180.02562 * 16 15 13 30 30 H 1.07995 * 119.92048 * 179.72404 * 21 6 5 31 31 H 1.07999 * 120.07201 * 180.25262 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.8221 0.8853 5 6 4.6484 0.8182 0.8796 6 6 5.3374 0.0032 -0.0010 7 6 6.8444 0.0047 -0.0017 8 8 7.3299 -0.9989 0.9286 9 6 8.6608 -1.1262 1.0479 10 8 9.3958 -0.4226 0.3962 11 6 9.2383 -2.1473 1.9937 12 16 11.0457 -2.0748 1.9297 13 6 11.4439 -3.3338 3.0964 14 1 10.6549 -3.8758 3.5964 15 6 12.7717 -3.6297 3.3720 16 7 13.0693 -4.5705 4.2431 17 14 14.1365 -2.6928 2.5066 18 1 14.4968 -1.4934 3.3048 19 1 15.3268 -3.5695 2.3658 20 1 13.6710 -2.2704 1.1612 21 6 4.6492 -0.8094 -0.8845 22 6 3.2697 -0.8197 -0.8856 23 1 2.7324 1.4590 1.5728 24 1 5.1917 1.4528 1.5640 25 1 7.2069 0.9869 0.3016 26 1 7.2075 -0.2231 -1.0039 27 1 8.9023 -1.9336 3.0085 28 1 8.9037 -3.1428 1.7022 29 1 13.9972 -4.7771 4.4360 30 1 5.1933 -1.4398 -1.5722 31 1 2.7338 -1.4574 -1.5729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046025778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -52.086846 kcal Electronic energy + Delta-G solvation = -17002.675734 eV Core-core repulsion = 13953.885419 eV Total energy + Delta-G solvation = -3048.790315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55489 -40.40765 -37.87165 -37.30083 -34.66521 -33.50409 -32.08939 -31.37689 -28.12142 -27.78926 -23.77865 -23.57126 -22.37205 -19.96978 -19.91383 -18.68885 -17.73859 -17.66181 -17.07980 -16.49858 -16.10574 -15.92895 -15.51492 -15.12365 -14.90007 -14.85275 -14.44019 -14.29873 -13.95920 -13.83476 -13.47277 -13.32973 -13.23855 -12.99956 -12.76327 -12.44860 -12.12324 -11.87183 -11.67241 -11.60663 -11.15898 -10.59127 -9.99125 -9.94095 -9.02932 -8.50115 -6.23224 -0.41851 0.38048 0.84254 1.13358 1.34367 1.39104 1.51707 1.56320 1.74248 2.09696 2.25984 2.67029 2.79557 2.88157 2.89307 3.54032 3.76313 3.91793 3.98937 4.15384 4.21492 4.28612 4.45629 4.50051 4.57462 4.73893 5.04118 5.13007 5.28610 5.28739 5.49671 5.72021 5.78320 6.14262 6.38584 6.68565 6.94010 8.62088 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.048766 B = 0.002767 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.029984 B =10115.314728 C =10376.646020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.279 3.721 3 C -0.031 4.031 4 C -0.067 4.067 5 C -0.097 4.097 6 C -0.072 4.072 7 C 0.096 3.904 8 O -0.345 6.345 9 C 0.493 3.507 10 O -0.516 6.516 11 C -0.092 4.092 12 S -0.162 6.162 13 C -0.531 4.531 14 H 0.065 0.935 15 C 0.045 3.955 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.261 1.261 19 H -0.261 1.261 20 H -0.232 1.232 21 C -0.097 4.097 22 C -0.067 4.067 23 H 0.154 0.846 24 H 0.151 0.849 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.277 0.723 30 H 0.151 0.849 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.339 10.742 -10.108 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.035 4.035 3 C -0.035 4.035 4 C -0.088 4.088 5 C -0.115 4.115 6 C -0.073 4.073 7 C 0.023 3.977 8 O -0.262 6.262 9 C 0.336 3.664 10 O -0.404 6.404 11 C -0.240 4.240 12 S 0.065 5.935 13 C -0.678 4.678 14 H 0.083 0.917 15 C -0.161 4.161 16 N -0.553 5.553 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.156 1.156 21 C -0.115 4.115 22 C -0.088 4.088 23 H 0.171 0.829 24 H 0.169 0.831 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.108 11.529 -10.841 24.049 hybrid contribution 0.332 -0.825 0.823 1.211 sum -17.776 10.704 -10.019 23.043 Atomic orbital electron populations 1.81302 1.13463 1.09679 1.09554 1.25916 0.92780 0.92404 0.92407 1.16169 0.83295 1.02447 1.01565 1.21367 0.93966 0.96745 0.96699 1.21250 0.93774 0.98769 0.97707 1.19801 0.92966 0.97457 0.97026 1.22124 0.90716 0.91496 0.93382 1.86550 1.22709 1.56549 1.60417 1.22749 0.80842 0.82157 0.80698 1.90676 1.60948 1.44294 1.44511 1.22949 0.97572 1.01184 1.02271 1.84619 1.01118 1.50599 1.57199 1.22424 0.96321 1.22048 1.27045 0.91694 1.25582 1.00479 0.95168 0.94828 1.70017 1.20561 1.31179 1.33591 0.85868 0.79522 0.79424 0.81568 1.18599 1.18551 1.15594 1.21253 0.93780 0.97654 0.98805 1.21365 0.93960 0.96619 0.96830 0.82866 0.83099 0.89125 0.89126 0.85692 0.85652 0.91320 0.83091 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.13 18.54 19.00 0.35 -9.77 16 2 C 0.28 4.53 15.33 88.33 1.35 5.88 16 3 C -0.03 -0.37 5.73 -21.36 -0.12 -0.49 16 4 C -0.07 -0.67 9.76 22.54 0.22 -0.45 16 5 C -0.10 -1.05 9.68 22.23 0.22 -0.84 16 6 C -0.07 -0.94 5.53 -19.80 -0.11 -1.05 16 7 C 0.10 1.66 5.58 71.24 0.40 2.06 16 8 O -0.35 -8.29 10.20 -51.35 -0.52 -8.82 16 9 C 0.49 15.38 7.98 71.23 0.57 15.95 16 10 O -0.52 -18.83 15.61 21.94 0.34 -18.48 16 11 C -0.09 -3.21 6.27 71.23 0.45 -2.77 16 12 S -0.16 -7.59 18.55 -56.49 -1.05 -8.64 16 13 C -0.53 -29.55 10.04 67.95 0.68 -28.87 16 14 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 15 C 0.05 2.55 5.50 84.86 0.47 3.02 16 16 N -0.92 -54.27 13.97 21.65 0.30 -53.97 16 17 Si 0.91 42.84 27.74 68.60 1.90 44.74 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.23 -10.67 6.74 99.48 0.67 -10.00 16 21 C -0.10 -1.05 9.68 22.23 0.22 -0.84 16 22 C -0.07 -0.67 9.76 22.54 0.22 -0.45 16 23 H 0.15 0.95 8.06 -2.92 -0.02 0.92 16 24 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 25 H 0.09 1.47 8.07 -2.39 -0.02 1.45 16 26 H 0.09 1.47 8.07 -2.39 -0.02 1.45 16 27 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 28 H 0.13 4.07 8.14 -2.40 -0.02 4.05 16 29 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -69.43 307.39 7.00 -62.43 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.12 Total: 1.35 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 4.55 Total: -8.84 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.65 Total: -63.74 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.18 Total: -27.30 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.05 Total: -8.64 kcal Total: -69.43 7.00 -62.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046025778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.339 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds