Wall clock time and date at job start Mon Mar 30 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86793 * 120.00182 * 2 1 4 4 H 1.48494 * 109.47389 * 270.00165 * 3 2 1 5 5 H 1.48499 * 109.47104 * 30.00880 * 3 2 1 6 6 H 1.48501 * 109.47090 * 150.00427 * 3 2 1 7 7 C 1.38880 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00144 * 359.97438 * 7 2 1 9 9 O 1.34792 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.34768 * 117.00092 * 179.97438 * 9 7 2 11 11 O 1.21553 * 120.00145 * 0.02562 * 10 9 7 12 12 C 1.47277 * 119.99622 * 180.27789 * 10 9 7 13 13 C 1.36778 * 126.84509 * 179.43859 * 12 10 9 14 14 C 1.42125 * 103.78423 * 179.87687 * 13 12 10 15 15 C 1.48459 * 126.83342 * 180.13445 * 14 13 12 16 16 C 1.39340 * 120.10560 * 180.32636 * 15 14 13 17 17 C 1.38015 * 119.93481 * 179.97438 * 16 15 14 18 18 C 1.38306 * 120.14276 * 0.02562 * 17 16 15 19 19 C 1.38525 * 120.21170 * 359.97438 * 18 17 16 20 20 F 1.35096 * 119.96384 * 180.02562 * 19 18 17 21 21 C 1.38273 * 120.06690 * 359.74263 * 19 18 17 22 22 N 1.30961 * 106.33557 * 0.38652 * 14 13 12 23 23 O 1.20860 * 111.83341 * 359.75431 * 22 14 13 24 24 H 0.97002 * 119.99649 * 359.97438 * 1 2 3 25 25 H 1.08004 * 128.10596 * 359.97438 * 13 12 10 26 26 H 1.08000 * 120.03525 * 0.02562 * 16 15 14 27 27 H 1.07990 * 119.92921 * 180.02562 * 17 16 15 28 28 H 1.07992 * 119.89480 * 180.02562 * 18 17 16 29 29 H 1.08003 * 120.07058 * 180.26867 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6176 0.0000 4 1 2.4953 2.0464 -1.4000 5 1 1.4453 2.6525 0.7002 6 1 3.5453 1.4400 0.6999 7 6 2.0080 -1.2028 -0.0005 8 1 1.4680 -2.1381 -0.0005 9 8 3.3560 -1.2029 -0.0011 10 6 3.9677 -2.4038 -0.0010 11 8 3.3056 -3.4232 -0.0010 12 6 5.4384 -2.4809 0.0046 13 6 6.2001 -3.6169 0.0161 14 6 7.5352 -3.1295 0.0139 15 6 8.7787 -3.9404 0.0204 16 6 10.0226 -3.3125 0.0241 17 6 11.1764 -4.0698 0.0307 18 6 11.1007 -5.4507 0.0332 19 6 9.8673 -6.0813 0.0296 20 9 9.7992 -7.4305 0.0326 21 6 8.7057 -5.3311 0.0289 22 7 7.4502 -1.8226 0.0104 23 8 6.3015 -1.4469 0.0054 24 1 -0.4850 0.8401 0.0004 25 1 5.8654 -4.6438 0.0233 26 1 10.0838 -2.2342 0.0225 27 1 12.1404 -3.5830 0.0339 28 1 12.0061 -6.0394 0.0388 29 1 7.7440 -5.8226 0.0305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051313164.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:40 Heat of formation + Delta-G solvation = -30.453432 kcal Electronic energy + Delta-G solvation = -19646.754622 eV Core-core repulsion = 16032.689226 eV Total energy + Delta-G solvation = -3614.065396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.058 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.16870 -44.81599 -39.34177 -39.27303 -35.78220 -34.46022 -32.62283 -31.94254 -31.13047 -30.37142 -26.30303 -24.51561 -23.92769 -22.56676 -22.22838 -20.16598 -18.46084 -18.22102 -17.59154 -17.14043 -16.63365 -16.44982 -15.93843 -15.86603 -15.25900 -14.84569 -14.56100 -14.21605 -13.82913 -13.49014 -13.43168 -12.96291 -12.62206 -12.40996 -12.22520 -11.65876 -11.55833 -11.38911 -10.90916 -10.72682 -10.55066 -9.94280 -9.70519 -9.58725 -9.21898 -8.90314 -8.83002 -6.63203 -4.33827 0.43972 0.84666 1.03730 2.21834 2.85451 3.10358 3.17026 3.30927 3.37849 3.49515 3.54454 3.81069 4.07950 4.09505 4.41059 4.57929 4.72991 4.80932 4.90858 4.95763 5.08478 5.28982 5.42135 5.69726 5.71853 5.83113 6.00272 6.06224 6.09363 6.49132 7.38533 7.75612 8.07257 8.31859 8.71304 9.34530 10.42438 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.039171 B = 0.003627 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.634702 B = 7717.782417 C = 8422.556642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.373 4.373 8 H 0.117 0.883 9 O -0.222 6.222 10 C 0.470 3.530 11 O -0.512 6.512 12 C -0.009 4.009 13 C -0.167 4.167 14 C 0.042 3.958 15 C 0.019 3.981 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.148 4.148 19 C 0.101 3.899 20 F -0.137 7.137 21 C -0.131 4.131 22 N -0.343 5.343 23 O 0.132 5.868 24 H 0.286 0.714 25 H 0.184 0.816 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.438 -6.497 0.089 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.448 4.448 8 H 0.135 0.865 9 O -0.128 6.128 10 C 0.316 3.684 11 O -0.408 6.408 12 C -0.073 4.073 13 C -0.189 4.189 14 C -0.113 4.113 15 C 0.018 3.982 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.167 4.167 19 C 0.082 3.918 20 F -0.115 7.115 21 C -0.151 4.151 22 N -0.042 5.042 23 O 0.057 5.943 24 H 0.097 0.903 25 H 0.202 0.798 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 20.938 -5.671 0.095 21.693 hybrid contribution -0.290 -0.272 -0.017 0.398 sum 20.648 -5.943 0.077 21.486 Atomic orbital electron populations 1.69561 1.05902 1.29276 1.44002 1.24639 0.95078 0.99154 0.94799 0.86208 0.80658 0.80795 0.79540 1.19339 1.20291 1.17681 1.20834 0.75461 0.97478 1.51053 0.86503 1.83557 1.24503 1.30263 1.74482 1.18417 0.83446 0.83577 0.82975 1.90785 1.63064 1.35803 1.51144 1.23350 0.91470 0.86886 1.05589 1.22670 0.89849 1.00658 1.05678 1.21696 0.93779 0.89964 1.05835 1.17395 0.89767 0.90935 1.00121 1.21327 0.90936 1.01129 0.98912 1.20960 0.98809 0.92659 0.98334 1.21265 0.96647 0.95671 1.03115 1.17461 0.94159 0.77044 1.03159 1.91523 1.97227 1.28845 1.93922 1.21118 0.98608 0.92916 1.02468 1.73983 0.99218 1.13776 1.17259 1.85044 1.10087 1.33106 1.66081 0.90347 0.79839 0.84472 0.84400 0.84428 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.66 13.95 55.49 0.77 -22.88 15 2 C 0.07 1.92 5.50 -17.51 -0.10 1.82 15 3 Si 0.90 20.42 28.62 -169.99 -4.86 15.55 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.25 -5.69 7.11 56.52 0.40 -5.29 15 7 C -0.37 -10.53 10.11 30.97 0.31 -10.21 15 8 H 0.12 3.58 7.09 -52.48 -0.37 3.21 15 9 O -0.22 -5.69 8.58 -22.37 -0.19 -5.88 15 10 C 0.47 10.95 7.89 34.40 0.27 11.22 15 11 O -0.51 -12.98 16.16 -19.31 -0.31 -13.29 15 12 C -0.01 -0.17 7.35 -36.44 -0.27 -0.44 15 13 C -0.17 -2.62 10.30 -38.62 -0.40 -3.02 15 14 C 0.04 0.63 7.05 -82.54 -0.58 0.04 15 15 C 0.02 0.23 5.88 -104.90 -0.62 -0.39 15 16 C -0.10 -1.07 9.70 -39.25 -0.38 -1.45 15 17 C -0.09 -0.72 10.03 -39.64 -0.40 -1.11 15 18 C -0.15 -1.22 10.02 -39.45 -0.40 -1.62 15 19 C 0.10 1.02 7.29 -39.46 -0.29 0.74 15 20 F -0.14 -1.47 17.26 2.25 0.04 -1.43 15 21 C -0.13 -1.43 9.58 -39.19 -0.38 -1.80 15 22 N -0.34 -5.68 11.78 33.40 0.39 -5.29 15 23 O 0.13 2.43 11.21 15.44 0.17 2.60 15 24 H 0.29 7.21 8.31 -40.82 -0.34 6.87 15 25 H 0.18 2.46 7.57 -52.48 -0.40 2.06 15 26 H 0.14 1.37 7.89 -52.49 -0.41 0.96 15 27 H 0.14 0.71 8.06 -52.49 -0.42 0.28 15 28 H 0.14 0.82 8.06 -52.49 -0.42 0.40 15 29 H 0.14 1.41 7.22 -52.48 -0.38 1.03 15 LS Contribution 283.77 15.07 4.28 4.28 Total: -1.00 -29.69 283.77 -4.47 -34.16 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -1.54 Total: -1.59 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.21 Total: -6.23 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 1.17 Total: -28.17 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.33 Total: -16.57 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.86 Total: 15.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.69 -4.47 -34.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051313164.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.708 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds