Wall clock time and date at job start Mon Mar 30 2020 01:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 S 1.81400 * 109.47250 * 270.02448 * 7 6 5 9 9 C 1.81403 * 103.00007 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46921 * 179.97438 * 9 8 7 11 11 O 1.21205 * 120.00491 * 0.02562 * 10 9 8 12 12 O 1.34317 * 119.99876 * 180.02562 * 10 9 8 13 13 C 1.34919 * 117.00149 * 180.02562 * 12 10 9 14 14 H 1.07996 * 119.99902 * 359.97438 * 13 12 10 15 15 C 1.38749 * 120.00095 * 180.02562 * 13 12 10 16 16 N 1.31448 * 119.99788 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47138 * 59.99588 * 17 15 13 19 19 H 1.48500 * 109.47358 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47008 * 300.00050 * 17 15 13 21 21 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 22 22 C 1.37947 * 120.14940 * 359.95280 * 21 6 5 23 23 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 25 25 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 26 26 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 27 27 H 1.08995 * 109.47398 * 300.00453 * 9 8 7 28 28 H 1.09003 * 109.46705 * 60.00365 * 9 8 7 29 29 H 0.96998 * 119.99386 * 180.02562 * 16 15 13 30 30 H 1.07993 * 119.92703 * 179.97438 * 21 6 5 31 31 H 1.08003 * 120.07687 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 16 7.4488 1.6888 -0.2800 9 6 9.2513 1.4874 -0.2457 10 6 9.9104 2.8242 -0.4683 11 8 9.2316 3.8147 -0.6333 12 8 11.2502 2.9181 -0.4839 13 6 11.7760 4.1438 -0.6874 14 1 11.1251 4.9939 -0.8291 15 6 13.1530 4.3121 -0.7159 16 7 13.9452 3.2773 -0.5441 17 14 13.8810 6.0089 -0.9985 18 1 13.4296 6.9268 0.0781 19 1 15.3633 5.9204 -0.9837 20 1 13.4288 6.5288 -2.3140 21 6 4.6489 -0.1954 -1.1838 22 6 3.2694 -0.1972 -1.1910 23 1 2.7328 0.3633 2.1140 24 1 5.1923 0.3522 2.1044 25 1 7.2076 -0.3594 0.9625 26 1 7.2078 -0.6511 -0.7934 27 1 9.5541 1.0894 0.7228 28 1 9.5549 0.7974 -1.0331 29 1 14.9078 3.3950 -0.5636 30 1 5.1926 -0.3482 -2.1042 31 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051365200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:04 Heat of formation + Delta-G solvation = -45.950894 kcal Electronic energy + Delta-G solvation = -16896.373803 eV Core-core repulsion = 13847.849563 eV Total energy + Delta-G solvation = -3048.524240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98513 -40.45279 -37.63115 -37.30468 -34.32642 -33.94425 -32.02294 -31.39211 -28.68895 -27.29486 -23.71346 -23.55940 -22.30207 -19.90676 -19.89555 -18.61329 -17.52131 -17.03139 -16.62910 -16.45661 -16.37055 -16.13138 -15.47210 -15.16744 -14.68459 -14.66847 -14.37636 -14.36264 -14.04230 -13.95620 -13.59084 -13.38209 -12.99767 -12.99431 -12.45707 -12.36234 -12.15372 -12.05267 -11.97657 -11.15206 -10.99744 -10.70671 -9.94293 -9.68834 -8.65625 -8.55241 -6.35164 -0.44910 0.43947 0.56862 1.29747 1.36143 1.51328 1.55556 1.58659 1.61616 2.01646 2.13797 2.73156 2.83894 2.95628 2.96162 3.66460 3.83500 4.00136 4.10630 4.27199 4.28794 4.38511 4.62973 4.64931 4.67437 4.83204 5.09471 5.15621 5.23375 5.34816 5.56309 5.81224 5.85514 6.41239 6.61709 6.89756 7.70416 8.64852 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.054931 B = 0.002670 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.604760 B =10486.072272 C =10682.981932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.281 3.719 3 C -0.041 4.041 4 C -0.067 4.067 5 C -0.105 4.105 6 C -0.045 4.045 7 C -0.060 4.060 8 S -0.221 6.221 9 C -0.076 4.076 10 C 0.407 3.593 11 O -0.567 6.567 12 O -0.239 6.239 13 C -0.421 4.421 14 H 0.082 0.918 15 C -0.002 4.002 16 N -0.900 5.900 17 Si 1.016 2.984 18 H -0.262 1.262 19 H -0.259 1.259 20 H -0.262 1.262 21 C -0.105 4.105 22 C -0.067 4.067 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.280 0.720 30 H 0.151 0.849 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.363 -11.267 1.872 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.034 4.034 3 C -0.045 4.045 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.048 4.048 7 C -0.206 4.206 8 S 0.008 5.992 9 C -0.224 4.224 10 C 0.254 3.746 11 O -0.464 6.464 12 O -0.147 6.147 13 C -0.497 4.497 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.538 5.538 17 Si 0.835 3.165 18 H -0.187 1.187 19 H -0.183 1.183 20 H -0.187 1.187 21 C -0.125 4.125 22 C -0.087 4.087 23 H 0.168 0.832 24 H 0.169 0.831 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.563 -10.136 1.683 19.491 hybrid contribution 1.502 -0.264 0.044 1.525 sum -15.061 -10.399 1.726 18.384 Atomic orbital electron populations 1.81280 1.13455 1.10765 1.08880 1.25951 0.92820 0.92234 0.92363 1.16136 0.83250 1.08764 0.96359 1.21344 0.94137 0.96074 0.97160 1.21241 0.93669 0.98774 0.98809 1.19581 0.93178 0.97601 0.94418 1.22593 0.94556 0.95392 1.08104 1.87891 1.00866 1.14477 1.95979 1.22905 0.95390 0.94971 1.09182 1.23403 0.82299 0.91473 0.77445 1.90575 1.64925 1.40352 1.50555 1.83874 1.20479 1.34663 1.75681 1.21369 0.91322 0.83783 1.53202 0.90070 1.26507 0.94531 1.04332 0.94882 1.70057 1.05105 1.32350 1.46247 0.84699 0.77563 0.74589 0.79625 1.18680 1.18315 1.18672 1.21238 0.93672 0.99104 0.98480 1.21343 0.94132 0.96171 0.97066 0.83186 0.83122 0.86634 0.86639 0.84814 0.84823 0.91096 0.83123 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.09 18.54 19.00 0.35 -10.74 16 2 C 0.28 5.16 15.33 88.33 1.35 6.51 16 3 C -0.04 -0.57 5.73 -21.36 -0.12 -0.70 16 4 C -0.07 -0.82 9.76 22.54 0.22 -0.60 16 5 C -0.11 -1.34 9.68 22.23 0.22 -1.12 16 6 C -0.05 -0.65 5.15 -19.81 -0.10 -0.75 16 7 C -0.06 -0.91 6.06 71.23 0.43 -0.47 16 8 S -0.22 -6.25 20.86 -56.49 -1.18 -7.43 16 9 C -0.08 -2.46 6.54 71.24 0.47 -2.00 16 10 C 0.41 19.76 7.92 71.24 0.56 20.32 16 11 O -0.57 -30.83 15.10 20.79 0.31 -30.52 16 12 O -0.24 -13.63 9.75 14.82 0.14 -13.48 16 13 C -0.42 -25.13 9.64 67.94 0.66 -24.48 16 14 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 15 C 0.00 -0.10 5.49 84.87 0.47 0.36 16 16 N -0.90 -51.96 13.67 21.62 0.30 -51.66 16 17 Si 1.02 42.69 29.55 68.60 2.03 44.71 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 C -0.11 -1.34 9.68 22.23 0.22 -1.12 16 22 C -0.07 -0.82 9.76 22.54 0.22 -0.60 16 23 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 24 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 25 H 0.12 1.35 8.08 -2.39 -0.02 1.33 16 26 H 0.12 1.35 8.08 -2.39 -0.02 1.33 16 27 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 29 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -76.46 309.36 7.70 -68.76 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 1.16 Total: 5.00 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.58 Total: -4.64 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.65 Total: -62.40 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: 0.46 Total: -44.00 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -1.18 Total: -7.43 kcal Total: -76.46 7.70 -68.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051365200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.810 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds