Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47124 * 273.46863 * 3 2 1 5 5 H 1.48500 * 109.47313 * 33.47093 * 3 2 1 6 6 H 1.48502 * 109.46961 * 153.46650 * 3 2 1 7 7 C 1.38790 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99959 * 5.00733 * 7 2 1 9 9 O 1.34848 * 120.00073 * 185.00368 * 7 2 1 10 10 C 1.34893 * 117.00127 * 185.28157 * 9 7 2 11 11 O 1.21658 * 119.99775 * 1.41364 * 10 9 7 12 12 C 1.46429 * 120.00277 * 181.42312 * 10 9 7 13 13 C 1.38050 * 126.24743 * 5.21866 * 12 10 9 14 14 C 1.39761 * 107.07745 * 179.97438 * 13 12 10 15 15 C 1.35511 * 107.89003 * 0.02562 * 14 13 12 16 16 N 1.35535 * 108.89312 * 359.97438 * 15 14 13 17 17 C 1.46508 * 125.68051 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46532 * 266.19111 * 17 16 15 19 19 C 1.33391 * 125.20331 * 84.44799 * 18 17 16 20 20 C 1.38428 * 114.91834 * 179.85665 * 19 18 17 21 21 C 1.33390 * 114.92272 * 0.42424 * 20 19 18 22 22 S 1.75881 * 109.59145 * 359.77540 * 21 20 19 23 23 H 0.97003 * 119.99645 * 359.97438 * 1 2 3 24 24 H 1.08003 * 126.45648 * 0.22993 * 13 12 10 25 25 H 1.07999 * 126.05327 * 179.97438 * 14 13 12 26 26 H 1.07998 * 125.55077 * 179.97438 * 15 14 13 27 27 H 1.08999 * 109.47115 * 26.19102 * 17 16 15 28 28 H 1.08999 * 109.47284 * 146.18928 * 17 16 15 29 29 H 1.07994 * 122.54277 * 0.02562 * 19 18 17 30 30 H 1.07996 * 122.53836 * 180.20161 * 20 19 18 31 31 H 1.07998 * 125.20434 * 179.79266 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4225 2.0887 -1.3975 5 1 1.4845 2.6304 0.7721 6 1 3.5807 1.4200 0.6255 7 6 2.0083 -1.2020 0.0005 8 1 1.4714 -2.1355 -0.0807 9 8 3.3529 -1.2042 0.1024 10 6 3.9739 -2.3961 -0.0132 11 8 3.3242 -3.4023 -0.2263 12 6 5.4300 -2.4789 0.1180 13 6 6.2790 -1.4448 0.4579 14 6 7.5762 -1.9649 0.4668 15 6 7.5007 -3.2776 0.1392 16 7 6.2024 -3.6024 -0.0750 17 6 5.7039 -4.9280 -0.4502 18 6 5.5871 -5.0146 -1.9502 19 6 6.5820 -5.3265 -2.7822 20 6 6.2366 -5.3470 -4.1225 21 6 4.9635 -5.0431 -4.3797 22 16 4.1200 -4.7125 -2.8721 23 1 -0.4850 0.8401 0.0004 24 1 5.9940 -0.4269 0.6796 25 1 8.4790 -1.4173 0.6936 26 1 8.3385 -3.9546 0.0615 27 1 6.3968 -5.6907 -0.0951 28 1 4.7245 -5.0889 0.0004 29 1 7.5805 -5.5490 -2.4362 30 1 6.9452 -5.5872 -4.9013 31 1 4.5186 -5.0060 -5.3631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052324206.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = 14.914625 kcal Electronic energy + Delta-G solvation = -18749.411140 eV Core-core repulsion = 15703.526227 eV Total energy + Delta-G solvation = -3045.884913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00445 -38.74982 -37.69934 -35.31563 -33.34963 -32.31257 -29.44576 -29.21001 -25.94686 -25.50157 -23.06696 -22.15533 -20.38072 -19.38400 -18.77044 -18.00811 -17.55115 -16.88363 -15.82205 -15.43770 -14.85360 -14.64239 -14.08686 -13.98086 -13.41246 -13.38958 -12.71903 -12.55292 -12.46209 -12.43590 -12.14524 -11.98158 -11.84380 -11.42105 -11.21827 -10.52903 -10.38480 -10.32168 -9.72485 -9.23161 -8.74303 -8.68449 -8.46364 -8.25803 -7.88474 -6.39862 -4.11875 1.00920 1.81175 1.91576 2.25884 2.67042 3.06726 3.11196 3.24140 3.28817 3.41552 4.00210 4.24309 4.29786 4.76237 4.88464 5.10926 5.12490 5.19370 5.39454 5.56043 5.61578 5.72596 5.81758 6.07652 6.14023 6.31272 6.46401 6.52581 6.61719 7.14499 7.29974 7.49145 7.70544 8.01933 8.58763 8.98319 9.67014 10.67861 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.006550 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.732312 B = 4273.608991 C = 5192.313197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.373 4.373 8 H 0.111 0.889 9 O -0.234 6.234 10 C 0.478 3.522 11 O -0.545 6.545 12 C -0.005 4.005 13 C -0.135 4.135 14 C -0.210 4.210 15 C 0.006 3.994 16 N -0.409 5.409 17 C 0.172 3.828 18 C -0.212 4.212 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.234 4.234 22 S 0.195 5.805 23 H 0.280 0.720 24 H 0.146 0.854 25 H 0.138 0.862 26 H 0.163 0.837 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -8.453 -4.119 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.449 4.449 8 H 0.129 0.871 9 O -0.141 6.141 10 C 0.327 3.673 11 O -0.442 6.442 12 C -0.116 4.116 13 C -0.160 4.160 14 C -0.235 4.235 15 C -0.128 4.128 16 N -0.084 5.084 17 C 0.050 3.950 18 C -0.331 4.331 19 C -0.158 4.158 20 C -0.177 4.177 21 C -0.371 4.371 22 S 0.461 5.539 23 H 0.090 0.910 24 H 0.164 0.836 25 H 0.156 0.844 26 H 0.181 0.819 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.844 -8.485 -3.893 15.878 hybrid contribution 1.722 0.380 -0.570 1.853 sum 14.566 -8.105 -4.463 17.256 Atomic orbital electron populations 1.69605 1.05719 1.28509 1.47007 1.24538 0.94991 0.98698 0.95468 0.86265 0.80811 0.81542 0.78886 1.19878 1.20618 1.17872 1.20660 0.76106 0.97089 1.51035 0.87110 1.83610 1.23973 1.30875 1.75650 1.19135 0.85656 0.83153 0.79389 1.90637 1.67095 1.36406 1.50090 1.19283 0.90432 0.87423 1.14498 1.21472 0.92105 0.98374 1.04041 1.20769 0.97634 0.94119 1.10943 1.21828 0.85422 0.97579 1.07963 1.43911 1.05980 1.07950 1.50563 1.20337 1.03384 0.82175 0.89117 1.24651 0.98448 1.10704 0.99260 1.20034 0.99419 1.03646 0.92672 1.20023 0.96189 1.05056 0.96477 1.26029 0.99226 1.08415 1.03438 1.85443 1.09948 1.64095 0.94430 0.90950 0.83644 0.84393 0.81927 0.87925 0.86313 0.84822 0.84845 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.55 13.96 55.49 0.77 -24.78 16 2 C 0.07 1.92 5.49 -17.52 -0.10 1.83 16 3 Si 0.90 21.48 28.62 -169.99 -4.87 16.62 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.25 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.37 -11.03 10.09 30.94 0.31 -10.72 16 8 H 0.11 3.56 7.11 -52.49 -0.37 3.19 16 9 O -0.23 -6.32 8.40 -22.06 -0.19 -6.51 16 10 C 0.48 11.68 7.85 34.03 0.27 11.95 16 11 O -0.54 -13.74 12.62 -19.39 -0.24 -13.98 16 12 C -0.01 -0.11 6.88 -82.00 -0.56 -0.67 16 13 C -0.13 -2.45 10.69 -39.08 -0.42 -2.87 16 14 C -0.21 -3.07 10.81 -39.99 -0.43 -3.50 16 15 C 0.01 0.08 11.37 -16.89 -0.19 -0.12 16 16 N -0.41 -6.73 2.75 -114.15 -0.31 -7.04 16 17 C 0.17 2.52 6.00 -5.19 -0.03 2.49 16 18 C -0.21 -3.17 6.09 -36.00 -0.22 -3.39 16 19 C -0.13 -1.59 10.05 -41.21 -0.41 -2.01 16 20 C -0.15 -1.80 10.18 -41.21 -0.42 -2.22 16 21 C -0.23 -3.13 11.23 29.04 0.33 -2.80 16 22 S 0.19 3.25 21.98 -107.50 -2.36 0.89 16 23 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.15 2.62 8.06 -52.48 -0.42 2.19 16 25 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 28 H 0.12 2.00 6.44 -51.93 -0.33 1.66 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -32.23 294.73 -7.44 -39.67 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.80 Total: 2.73 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.88 Total: -12.03 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.46 Total: -31.82 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.43 Total: -20.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.87 Total: 16.62 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.36 Total: 0.89 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.23 -7.44 -39.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052324206.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.581 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds