Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36658 * 122.94652 * 327.71776 * 3 2 1 5 5 S 1.70597 * 110.54516 * 179.80157 * 4 3 2 6 6 C 1.75684 * 91.85217 * 0.30411 * 5 4 3 7 7 C 1.46531 * 125.06995 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99783 * 175.46465 * 7 6 5 9 9 O 1.34878 * 119.99707 * 355.19220 * 7 6 5 10 10 C 1.45196 * 116.99967 * 174.95843 * 9 7 6 11 11 C 1.52999 * 109.47247 * 182.87468 * 10 9 7 12 12 C 1.50697 * 115.55066 * 64.81970 * 11 10 9 13 13 H 1.08005 * 119.99614 * 264.43570 * 12 11 10 14 14 C 1.37874 * 120.00182 * 84.43036 * 12 11 10 15 15 N 1.31509 * 120.00276 * 352.98915 * 14 12 11 16 16 Si 1.86801 * 119.99669 * 172.99048 * 14 12 11 17 17 H 1.48501 * 109.47537 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47238 * 120.00538 * 16 14 12 19 19 H 1.48507 * 109.47153 * 239.99823 * 16 14 12 20 20 C 1.52996 * 117.49755 * 279.14271 * 11 10 9 21 21 C 1.53005 * 117.49576 * 210.48341 * 11 10 9 22 22 C 1.35046 * 109.86072 * 359.69671 * 6 5 4 23 23 H 1.08000 * 124.72606 * 0.03423 * 4 3 2 24 24 H 1.08999 * 109.47326 * 302.87888 * 10 9 7 25 25 H 1.09007 * 109.47208 * 62.87101 * 10 9 7 26 26 H 0.96996 * 120.00497 * 185.04874 * 15 14 12 27 27 H 1.08997 * 117.50218 * 0.02562 * 20 11 10 28 28 H 1.09005 * 117.49640 * 145.01878 * 20 11 10 29 29 H 1.09001 * 117.49349 * 214.97612 * 21 11 10 30 30 H 1.08992 * 117.50222 * 359.97438 * 21 11 10 31 31 H 1.07998 * 123.18468 * 180.23327 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3117 -0.9686 0.6125 5 16 4.9777 -0.6610 0.4121 6 6 4.6555 0.8027 -0.5044 7 6 5.6800 1.6885 -1.0638 8 8 5.3542 2.6350 -1.7543 9 8 6.9840 1.4571 -0.8084 10 6 7.9488 2.3053 -1.4850 11 6 9.3657 1.8503 -1.1295 12 6 9.7455 0.4730 -1.6090 13 1 9.6471 -0.3751 -0.9476 14 6 10.2187 0.2957 -2.8918 15 7 10.2093 1.3000 -3.7408 16 14 10.8729 -1.3711 -3.4238 17 1 10.7752 -2.3260 -2.2908 18 1 10.0712 -1.8755 -4.5675 19 1 12.2932 -1.2368 -3.8362 20 6 9.9425 2.3167 0.2086 21 6 10.4633 2.9158 -1.1003 22 6 3.3227 0.9866 -0.6216 23 1 2.9018 -1.8136 1.1456 24 1 7.8036 2.2327 -2.5629 25 1 7.8089 3.3390 -1.1685 26 1 10.4731 1.1578 -4.6633 27 1 9.3125 2.9473 0.8358 28 1 10.5971 1.6274 0.7421 29 1 11.4603 2.6204 -1.4273 30 1 10.1762 3.9408 -1.3347 31 1 2.8853 1.8213 -1.1490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083943182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = 1.816616 kcal Electronic energy + Delta-G solvation = -17960.539079 eV Core-core repulsion = 14914.086193 eV Total energy + Delta-G solvation = -3046.452885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92669 -38.56734 -36.86044 -36.05926 -35.28323 -32.02601 -30.62213 -27.17522 -25.85987 -25.29390 -23.14769 -21.22413 -19.85349 -19.31207 -18.85569 -17.31726 -16.72941 -16.13151 -15.81728 -15.47693 -14.66594 -14.37362 -14.12184 -13.77744 -13.72741 -13.23631 -12.87151 -12.70188 -12.54907 -12.24139 -12.11705 -11.69916 -11.17858 -11.03810 -10.92209 -10.59909 -10.38778 -10.28121 -9.97895 -9.65873 -9.26262 -8.89508 -8.83553 -8.54621 -8.28691 -6.12062 -4.18520 0.12163 1.14777 1.39227 1.55724 2.47218 2.94723 3.08410 3.23677 3.30695 3.32840 3.35843 3.87757 4.33717 4.56465 4.94470 4.99651 5.16113 5.30193 5.47629 5.74846 5.78887 5.90238 6.17205 6.25355 6.43155 6.55520 6.66380 6.96741 7.06531 7.27321 7.28280 7.38310 7.81189 8.15613 8.32433 8.83341 9.47712 10.96519 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.004577 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.775480 B = 6116.674756 C = 6597.232560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.279 3.721 3 C -0.063 4.063 4 C -0.206 4.206 5 S 0.344 5.656 6 C -0.245 4.245 7 C 0.528 3.472 8 O -0.505 6.505 9 O -0.333 6.333 10 C 0.117 3.883 11 C 0.037 3.963 12 C -0.491 4.491 13 H 0.065 0.935 14 C 0.070 3.930 15 N -0.881 5.881 16 Si 0.891 3.109 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.205 4.205 21 C -0.146 4.146 22 C -0.028 4.028 23 H 0.182 0.818 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.262 0.738 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 -3.551 8.397 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.038 4.038 3 C -0.081 4.081 4 C -0.349 4.349 5 S 0.613 5.387 6 C -0.364 4.364 7 C 0.371 3.629 8 O -0.396 6.396 9 O -0.248 6.248 10 C 0.045 3.955 11 C 0.036 3.964 12 C -0.529 4.529 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.518 5.518 16 Si 0.718 3.282 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.242 4.242 21 C -0.183 4.183 22 C -0.060 4.060 23 H 0.199 0.801 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.933 -3.936 8.485 12.934 hybrid contribution -0.604 0.032 -1.052 1.213 sum -9.537 -3.905 7.434 12.707 Atomic orbital electron populations 1.81262 1.11749 1.07850 1.08900 1.24987 0.91741 0.93640 0.93431 1.14956 0.85854 0.99121 1.08206 1.26308 1.01200 1.03388 1.03961 1.83814 0.97877 1.14505 1.42454 1.23352 0.96012 1.04073 1.12999 1.19583 0.83044 0.82353 0.77921 1.90860 1.82978 1.29190 1.36556 1.86587 1.14131 1.59352 1.64737 1.23002 0.86207 0.89384 0.96944 1.18782 0.87187 0.95702 0.94701 1.20418 1.42984 0.91236 0.98244 0.91693 1.25017 0.94968 0.96647 0.96706 1.69963 1.47304 1.30542 1.03966 0.86550 0.78803 0.84114 0.78684 1.19502 1.20992 1.20913 1.23016 1.05299 1.04356 0.91508 1.22562 0.99905 0.96320 0.99515 1.20223 0.90643 0.98520 0.96625 0.80052 0.90206 0.93956 0.92830 0.91443 0.89995 0.89411 0.91557 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.62 18.54 41.84 0.78 -4.84 16 2 C 0.28 3.15 15.55 -22.47 -0.35 2.80 16 3 C -0.06 -0.63 5.67 -108.31 -0.61 -1.25 16 4 C -0.21 -1.65 10.82 30.16 0.33 -1.32 16 5 S 0.34 3.47 22.88 -107.50 -2.46 1.01 16 6 C -0.25 -3.32 6.37 -37.38 -0.24 -3.56 16 7 C 0.53 9.53 7.92 34.07 0.27 9.80 16 8 O -0.50 -10.26 16.60 -19.35 -0.32 -10.58 16 9 O -0.33 -6.70 9.99 -40.98 -0.41 -7.11 16 10 C 0.12 2.62 5.30 37.16 0.20 2.82 16 11 C 0.04 0.86 1.59 -155.66 -0.25 0.61 16 12 C -0.49 -12.62 8.76 -34.44 -0.30 -12.92 16 13 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 14 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 15 N -0.88 -23.89 12.97 55.43 0.72 -23.18 16 16 Si 0.89 20.11 29.55 -169.99 -5.02 15.09 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.20 -4.17 9.96 -26.69 -0.27 -4.44 16 21 C -0.15 -3.20 9.49 -26.69 -0.25 -3.46 16 22 C -0.03 -0.32 9.72 -40.49 -0.39 -0.72 16 23 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 24 H 0.08 1.98 8.13 -51.93 -0.42 1.55 16 25 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 26 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.16 1.81 8.03 -52.49 -0.42 1.39 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -29.30 309.42 -6.95 -36.24 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -2.92 Total: -1.40 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.97 Total: -9.91 kcal Atomic # 7 Polarization: -29.51 SS G_CDS: 1.49 Total: -28.02 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.73 Total: -17.69 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.46 Total: 1.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.30 -6.95 -36.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083943182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.059 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds