Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36658 * 122.94652 * 327.71776 * 3 2 1 5 5 S 1.70597 * 110.54516 * 179.80157 * 4 3 2 6 6 C 1.75684 * 91.85217 * 0.30411 * 5 4 3 7 7 C 1.46531 * 125.06995 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99783 * 175.46465 * 7 6 5 9 9 O 1.34878 * 119.99707 * 355.19220 * 7 6 5 10 10 C 1.45196 * 116.99967 * 174.95843 * 9 7 6 11 11 C 1.52999 * 109.47247 * 182.87468 * 10 9 7 12 12 C 1.50697 * 115.55066 * 64.81970 * 11 10 9 13 13 H 1.08005 * 119.99614 * 264.43570 * 12 11 10 14 14 C 1.37874 * 120.00182 * 84.43036 * 12 11 10 15 15 N 1.31509 * 120.00276 * 352.98915 * 14 12 11 16 16 Si 1.86801 * 119.99669 * 172.99048 * 14 12 11 17 17 H 1.48501 * 109.47537 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47238 * 120.00538 * 16 14 12 19 19 H 1.48507 * 109.47153 * 239.99823 * 16 14 12 20 20 C 1.52996 * 117.49755 * 279.14271 * 11 10 9 21 21 C 1.53005 * 117.49576 * 210.48341 * 11 10 9 22 22 C 1.35046 * 109.86072 * 359.69671 * 6 5 4 23 23 H 1.08000 * 124.72606 * 0.03423 * 4 3 2 24 24 H 1.08999 * 109.47326 * 302.87888 * 10 9 7 25 25 H 1.09007 * 109.47208 * 62.87101 * 10 9 7 26 26 H 0.96996 * 120.00497 * 185.04874 * 15 14 12 27 27 H 1.08997 * 117.50218 * 0.02562 * 20 11 10 28 28 H 1.09005 * 117.49640 * 145.01878 * 20 11 10 29 29 H 1.09001 * 117.49349 * 214.97612 * 21 11 10 30 30 H 1.08992 * 117.50222 * 359.97438 * 21 11 10 31 31 H 1.07998 * 123.18468 * 180.23327 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3117 -0.9686 0.6125 5 16 4.9777 -0.6610 0.4121 6 6 4.6555 0.8027 -0.5044 7 6 5.6800 1.6885 -1.0638 8 8 5.3542 2.6350 -1.7543 9 8 6.9840 1.4571 -0.8084 10 6 7.9488 2.3053 -1.4850 11 6 9.3657 1.8503 -1.1295 12 6 9.7455 0.4730 -1.6090 13 1 9.6471 -0.3751 -0.9476 14 6 10.2187 0.2957 -2.8918 15 7 10.2093 1.3000 -3.7408 16 14 10.8729 -1.3711 -3.4238 17 1 10.7752 -2.3260 -2.2908 18 1 10.0712 -1.8755 -4.5675 19 1 12.2932 -1.2368 -3.8362 20 6 9.9425 2.3167 0.2086 21 6 10.4633 2.9158 -1.1003 22 6 3.3227 0.9866 -0.6216 23 1 2.9018 -1.8136 1.1456 24 1 7.8036 2.2327 -2.5629 25 1 7.8089 3.3390 -1.1685 26 1 10.4731 1.1578 -4.6633 27 1 9.3125 2.9473 0.8358 28 1 10.5971 1.6274 0.7421 29 1 11.4603 2.6204 -1.4273 30 1 10.1762 3.9408 -1.3347 31 1 2.8853 1.8213 -1.1490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083943182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -13.186347 kcal Electronic energy + Delta-G solvation = -17961.189656 eV Core-core repulsion = 14914.086193 eV Total energy + Delta-G solvation = -3047.103463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34643 -39.57528 -38.49076 -37.12641 -36.79196 -33.98512 -31.63478 -28.76597 -27.38072 -26.63840 -24.38024 -22.92197 -21.19370 -20.92675 -19.97586 -18.42662 -18.20646 -17.55081 -17.31582 -16.89173 -16.49523 -15.67231 -15.32712 -15.00724 -14.72092 -14.58859 -14.09709 -13.95071 -13.74844 -13.47319 -13.41106 -13.38021 -12.87722 -12.81511 -12.34613 -12.06075 -12.03962 -11.80046 -11.67193 -11.41865 -10.74693 -10.46620 -10.16225 -10.05688 -9.67950 -8.08996 -6.20580 -0.76062 0.27989 0.43510 0.70590 1.44214 1.48363 1.50599 1.58516 1.67204 1.78755 2.39808 2.46031 2.97609 3.19179 3.44605 3.73458 3.90662 4.17931 4.18456 4.41625 4.48528 4.56289 4.69105 4.78637 4.88759 4.95187 5.01470 5.22606 5.44825 5.59829 5.65005 5.80285 6.39295 6.40240 6.69666 6.85348 7.48338 8.99204 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.004577 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.775480 B = 6116.674756 C = 6597.232560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.303 3.697 3 C -0.078 4.078 4 C -0.159 4.159 5 S 0.377 5.623 6 C -0.291 4.291 7 C 0.527 3.473 8 O -0.540 6.540 9 O -0.338 6.338 10 C 0.130 3.870 11 C 0.006 3.994 12 C -0.500 4.500 13 H 0.062 0.938 14 C 0.024 3.976 15 N -0.912 5.912 16 Si 0.949 3.051 17 H -0.260 1.260 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.175 4.175 21 C -0.151 4.151 22 C -0.007 4.007 23 H 0.224 0.776 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.260 0.740 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 -5.398 10.215 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.014 4.014 3 C -0.095 4.095 4 C -0.302 4.302 5 S 0.646 5.354 6 C -0.409 4.409 7 C 0.372 3.628 8 O -0.433 6.433 9 O -0.254 6.254 10 C 0.056 3.944 11 C 0.005 3.995 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.176 4.176 15 N -0.550 5.550 16 Si 0.775 3.225 17 H -0.183 1.183 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.212 4.212 21 C -0.188 4.188 22 C -0.041 4.041 23 H 0.241 0.759 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.568 -5.794 10.325 15.223 hybrid contribution -0.464 0.559 -1.546 1.708 sum -10.032 -5.235 8.780 14.322 Atomic orbital electron populations 1.81298 1.12826 1.09099 1.10365 1.24964 0.91616 0.92536 0.92264 1.14768 0.85140 0.99771 1.09775 1.26772 0.99915 1.02784 1.00680 1.83781 0.98751 1.11992 1.40904 1.23033 0.95237 1.06096 1.16522 1.20222 0.82765 0.82510 0.77254 1.90829 1.83148 1.31005 1.38312 1.86567 1.15088 1.59098 1.64654 1.22587 0.86622 0.90173 0.94995 1.18876 0.87859 0.95318 0.97430 1.20691 1.42490 0.92309 0.98298 0.91997 1.25709 0.95321 0.99709 0.96899 1.70078 1.48524 1.32308 1.04070 0.85637 0.77866 0.80633 0.78374 1.18342 1.21082 1.20983 1.23028 1.04191 1.03502 0.90500 1.22501 0.98654 0.96577 1.01096 1.20277 0.90137 0.98428 0.95234 0.75901 0.93809 0.93111 0.93089 0.89004 0.89356 0.91247 0.90544 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.51 18.54 19.01 0.35 -11.16 16 2 C 0.30 6.13 15.55 88.33 1.37 7.50 16 3 C -0.08 -1.33 5.67 -22.26 -0.13 -1.45 16 4 C -0.16 -1.85 10.82 67.45 0.73 -1.12 16 5 S 0.38 6.51 22.88 -56.49 -1.29 5.21 16 6 C -0.29 -7.57 6.37 23.70 0.15 -7.42 16 7 C 0.53 19.26 7.92 69.98 0.55 19.81 16 8 O -0.54 -22.68 16.60 19.48 0.32 -22.36 16 9 O -0.34 -13.72 9.99 -57.92 -0.58 -14.30 16 10 C 0.13 5.91 5.30 71.98 0.38 6.29 16 11 C 0.01 0.26 1.59 -52.93 -0.08 0.18 16 12 C -0.50 -25.74 8.76 25.60 0.22 -25.52 16 13 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 14 C 0.02 1.25 5.39 84.65 0.46 1.70 16 15 N -0.91 -50.54 12.97 21.45 0.28 -50.26 16 16 Si 0.95 41.29 29.55 68.60 2.03 43.31 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 C -0.18 -6.88 9.96 30.62 0.30 -6.58 16 21 C -0.15 -6.63 9.49 30.62 0.29 -6.34 16 22 C -0.01 -0.16 9.72 21.68 0.21 0.05 16 23 H 0.22 0.80 8.06 -2.91 -0.02 0.77 16 24 H 0.04 2.27 8.13 -2.39 -0.02 2.25 16 25 H 0.05 2.17 8.09 -2.38 -0.02 2.15 16 26 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 27 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 29 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.16 3.50 8.03 -2.91 -0.02 3.48 16 Total: -1.00 -64.72 309.42 6.74 -57.98 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.16 Total: 4.47 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.47 Total: -12.89 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.63 Total: -61.42 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.26 Total: -36.66 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.29 Total: 5.21 kcal Total: -64.72 6.74 -57.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083943182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.797 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds