Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99744 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00265 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00087 * 3 2 1 7 7 C 1.39037 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36885 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99851 * 180.02562 * 9 7 2 11 11 O 1.21605 * 120.00226 * 0.26927 * 10 9 7 12 12 C 1.47586 * 120.00060 * 179.97438 * 10 9 7 13 13 C 1.39721 * 120.17206 * 359.72185 * 12 10 9 14 14 C 1.37835 * 119.86982 * 179.71901 * 13 12 10 15 15 C 1.50701 * 119.88777 * 180.25237 * 14 13 12 16 16 F 1.39899 * 109.47586 * 180.30079 * 15 14 13 17 17 F 1.39899 * 109.47395 * 300.30666 * 15 14 13 18 18 F 1.39906 * 109.46868 * 60.30251 * 15 14 13 19 19 C 1.38471 * 120.22362 * 0.55696 * 14 13 12 20 20 C 1.38214 * 120.35257 * 359.71892 * 19 14 13 21 21 C 1.38301 * 120.12444 * 0.02562 * 20 19 14 22 22 F 1.35101 * 120.11288 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99840 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00106 * 0.02562 * 9 7 2 25 25 H 1.08004 * 120.06312 * 359.97438 * 13 12 10 26 26 H 1.08004 * 119.82408 * 179.69465 * 19 14 13 27 27 H 1.08000 * 119.93924 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4451 2.6526 0.7001 6 1 3.5453 1.4402 0.7001 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0001 9 7 1.3245 -2.3895 -0.0016 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5568 0.0043 12 6 1.2605 -4.8349 -0.0022 13 6 -0.1367 -4.8391 0.0032 14 6 -0.8195 -6.0364 -0.0033 15 6 -2.3265 -6.0414 -0.0033 16 9 -2.7886 -7.3619 -0.0035 17 9 -2.7951 -5.3835 1.1390 18 9 -2.7950 -5.3833 -1.1456 19 6 -0.1256 -7.2346 -0.0034 20 6 1.2566 -7.2413 -0.0029 21 6 1.9564 -6.0484 -0.0017 22 9 3.3074 -6.0551 -0.0007 23 1 -0.4850 0.8400 0.0004 24 1 0.3545 -2.3895 -0.0024 25 1 -0.6806 -3.9060 0.0081 26 1 -0.6672 -8.1691 -0.0034 27 1 1.7911 -8.1797 -0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094596068.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = -208.627224 kcal Electronic energy + Delta-G solvation = -21058.847133 eV Core-core repulsion = 16895.198802 eV Total energy + Delta-G solvation = -4163.648331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.11826 -48.55390 -47.65962 -47.54327 -39.42049 -37.66871 -34.23503 -31.94069 -31.51718 -30.84183 -25.78667 -25.47110 -23.63595 -22.02591 -20.02996 -18.64416 -18.42277 -18.41575 -17.73856 -17.25565 -16.28763 -15.73463 -15.37678 -14.83693 -14.46434 -14.44313 -14.29979 -14.01733 -13.99723 -13.75521 -13.72705 -13.53840 -13.47839 -13.03430 -12.73553 -12.24570 -11.81636 -11.75144 -11.29508 -11.24238 -10.53607 -10.42467 -9.77775 -9.13019 -8.81210 -8.65652 -8.23587 -6.71239 -4.01628 0.74305 0.99502 2.67726 2.97408 3.14964 3.17626 3.21297 3.72170 3.94704 4.04210 4.13916 4.28198 4.47138 4.59793 4.70643 4.87795 5.12498 5.22479 5.57325 5.67508 5.78306 6.01636 6.07317 6.28521 6.73905 7.29070 7.78377 8.32638 8.90275 9.22202 9.79080 10.44754 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.005973 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.685949 B = 4686.529763 C = 6039.721095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.291 4.291 8 H 0.112 0.888 9 N -0.534 5.534 10 C 0.457 3.543 11 O -0.584 6.584 12 C -0.130 4.130 13 C -0.031 4.031 14 C -0.201 4.201 15 C 0.513 3.487 16 F -0.180 7.180 17 F -0.175 7.175 18 F -0.175 7.175 19 C -0.051 4.051 20 C -0.164 4.164 21 C 0.170 3.830 22 F -0.109 7.109 23 H 0.279 0.721 24 H 0.393 0.607 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 -12.095 -0.006 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.421 4.421 8 H 0.129 0.871 9 N -0.168 5.168 10 C 0.245 3.755 11 O -0.470 6.470 12 C -0.135 4.135 13 C -0.051 4.051 14 C -0.203 4.203 15 C 0.459 3.541 16 F -0.162 7.162 17 F -0.156 7.156 18 F -0.156 7.156 19 C -0.070 4.070 20 C -0.183 4.183 21 C 0.148 3.852 22 F -0.086 7.086 23 H 0.089 0.911 24 H 0.228 0.772 25 H 0.163 0.837 26 H 0.162 0.838 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.152 -11.851 0.004 12.923 hybrid contribution -0.376 0.813 -0.012 0.896 sum -5.528 -11.038 -0.008 12.345 Atomic orbital electron populations 1.69586 1.06240 1.29226 1.46928 1.25460 0.95748 1.00354 0.96409 0.85718 0.79333 0.79784 0.78761 1.19968 1.20546 1.18996 1.19922 0.93942 0.81872 1.46317 0.87051 1.41921 1.09492 1.04762 1.60579 1.17307 0.87523 0.82723 0.87947 1.90686 1.12508 1.86432 1.57374 1.20486 0.93137 0.95037 1.04799 1.21006 0.93019 0.97532 0.93493 1.19817 0.90845 0.96135 1.13491 1.18193 0.88575 0.73386 0.73992 1.93141 1.90520 1.36210 1.96290 1.93235 1.90282 1.81121 1.50947 1.93237 1.90285 1.81113 1.50948 1.20769 0.93466 0.97087 0.95641 1.21014 0.94116 0.97300 1.05837 1.17840 0.77797 0.92988 0.96544 1.91600 1.27570 1.97157 1.92321 0.91068 0.77173 0.83695 0.83767 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.66 13.05 55.50 0.72 -21.94 15 2 C 0.02 0.63 5.50 -17.45 -0.10 0.54 15 3 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.29 -7.82 9.68 -15.00 -0.15 -7.96 15 8 H 0.11 3.12 7.15 -52.49 -0.38 2.75 15 9 N -0.53 -13.34 5.23 -11.91 -0.06 -13.40 15 10 C 0.46 11.13 7.72 -12.45 -0.10 11.04 15 11 O -0.58 -16.23 14.91 5.27 0.08 -16.15 15 12 C -0.13 -2.51 5.88 -104.91 -0.62 -3.13 15 13 C -0.03 -0.51 9.07 -39.18 -0.36 -0.86 15 14 C -0.20 -2.80 5.37 -104.68 -0.56 -3.36 15 15 C 0.51 6.77 3.31 36.01 0.12 6.89 15 16 F -0.18 -2.14 15.96 2.25 0.04 -2.10 15 17 F -0.17 -2.45 17.23 2.25 0.04 -2.41 15 18 F -0.17 -2.45 17.24 2.25 0.04 -2.41 15 19 C -0.05 -0.60 9.42 -39.50 -0.37 -0.97 15 20 C -0.16 -2.10 10.01 -39.57 -0.40 -2.50 15 21 C 0.17 2.95 7.29 -38.94 -0.28 2.67 15 22 F -0.11 -2.13 15.55 2.25 0.04 -2.09 15 23 H 0.28 6.73 8.31 -40.82 -0.34 6.39 15 24 H 0.39 9.23 5.93 -40.82 -0.24 8.99 15 25 H 0.15 2.39 6.41 -52.48 -0.34 2.05 15 26 H 0.14 1.28 7.14 -52.48 -0.37 0.90 15 27 H 0.15 1.40 8.06 -52.49 -0.42 0.98 15 LS Contribution 266.28 15.07 4.01 4.01 Total: -1.00 -29.38 266.28 -3.81 -33.19 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -0.89 Total: 6.04 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.80 Total: 2.35 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.66 Total: -35.34 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.08 Total: -16.15 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 0.15 Total: -9.02 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.38 -3.81 -33.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094596068.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.437 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds