Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99744 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00265 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00087 * 3 2 1 7 7 C 1.39037 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36885 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99851 * 180.02562 * 9 7 2 11 11 O 1.21605 * 120.00226 * 0.26927 * 10 9 7 12 12 C 1.47586 * 120.00060 * 179.97438 * 10 9 7 13 13 C 1.39721 * 120.17206 * 359.72185 * 12 10 9 14 14 C 1.37835 * 119.86982 * 179.71901 * 13 12 10 15 15 C 1.50701 * 119.88777 * 180.25237 * 14 13 12 16 16 F 1.39899 * 109.47586 * 180.30079 * 15 14 13 17 17 F 1.39899 * 109.47395 * 300.30666 * 15 14 13 18 18 F 1.39906 * 109.46868 * 60.30251 * 15 14 13 19 19 C 1.38471 * 120.22362 * 0.55696 * 14 13 12 20 20 C 1.38214 * 120.35257 * 359.71892 * 19 14 13 21 21 C 1.38301 * 120.12444 * 0.02562 * 20 19 14 22 22 F 1.35101 * 120.11288 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99840 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00106 * 0.02562 * 9 7 2 25 25 H 1.08004 * 120.06312 * 359.97438 * 13 12 10 26 26 H 1.08004 * 119.82408 * 179.69465 * 19 14 13 27 27 H 1.08000 * 119.93924 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4451 2.6526 0.7001 6 1 3.5453 1.4402 0.7001 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0001 9 7 1.3245 -2.3895 -0.0016 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5568 0.0043 12 6 1.2605 -4.8349 -0.0022 13 6 -0.1367 -4.8391 0.0032 14 6 -0.8195 -6.0364 -0.0033 15 6 -2.3265 -6.0414 -0.0033 16 9 -2.7886 -7.3619 -0.0035 17 9 -2.7951 -5.3835 1.1390 18 9 -2.7950 -5.3833 -1.1456 19 6 -0.1256 -7.2346 -0.0034 20 6 1.2566 -7.2413 -0.0029 21 6 1.9564 -6.0484 -0.0017 22 9 3.3074 -6.0551 -0.0007 23 1 -0.4850 0.8400 0.0004 24 1 0.3545 -2.3895 -0.0024 25 1 -0.6806 -3.9060 0.0081 26 1 -0.6672 -8.1691 -0.0034 27 1 1.7911 -8.1797 -0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094596068.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = -227.127698 kcal Electronic energy + Delta-G solvation = -21059.649374 eV Core-core repulsion = 16895.198802 eV Total energy + Delta-G solvation = -4164.450572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.18356 -49.98976 -48.68827 -48.64520 -40.93640 -39.33237 -36.20104 -33.71445 -32.76786 -32.34983 -27.41552 -26.85581 -25.07078 -23.31003 -21.61165 -20.42769 -19.53409 -19.49720 -19.18467 -18.59896 -17.81121 -17.20698 -16.82843 -16.68592 -15.85083 -15.59071 -15.55166 -15.46050 -15.42320 -15.07084 -14.86778 -14.79454 -14.59787 -14.48013 -14.28492 -13.62054 -13.54285 -13.04290 -12.98987 -12.65826 -12.37316 -12.14325 -11.66426 -10.63378 -10.38305 -10.21447 -10.11992 -8.62617 -6.07442 -0.53210 -0.24308 1.35317 1.39938 1.53137 1.57086 1.74890 2.21394 2.43060 2.60862 2.81628 3.01224 3.05144 3.15872 3.37676 3.53534 3.68472 3.99952 4.16498 4.43609 4.53881 4.80598 4.84838 4.94049 5.28679 5.49483 5.82172 6.38946 6.93886 7.29987 7.87141 8.54177 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.005973 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.685949 B = 4686.529763 C = 6039.721095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.006 4.006 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.545 5.545 10 C 0.456 3.544 11 O -0.626 6.626 12 C -0.163 4.163 13 C -0.026 4.026 14 C -0.200 4.200 15 C 0.520 3.480 16 F -0.165 7.165 17 F -0.180 7.180 18 F -0.180 7.180 19 C -0.016 4.016 20 C -0.139 4.139 21 C 0.154 3.846 22 F -0.128 7.128 23 H 0.285 0.715 24 H 0.398 0.602 25 H 0.137 0.863 26 H 0.193 0.807 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -14.485 -0.023 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.208 4.208 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.179 5.179 10 C 0.246 3.754 11 O -0.515 6.515 12 C -0.168 4.168 13 C -0.046 4.046 14 C -0.202 4.202 15 C 0.466 3.534 16 F -0.146 7.146 17 F -0.161 7.161 18 F -0.161 7.161 19 C -0.035 4.035 20 C -0.158 4.158 21 C 0.133 3.867 22 F -0.106 7.106 23 H 0.095 0.905 24 H 0.233 0.767 25 H 0.155 0.845 26 H 0.210 0.790 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.595 -14.267 -0.015 15.718 hybrid contribution -0.027 1.250 -0.007 1.250 sum -6.622 -13.017 -0.022 14.604 Atomic orbital electron populations 1.69634 1.07072 1.30253 1.47468 1.26217 0.96607 1.02768 0.95186 0.84818 0.77923 0.75983 0.78983 1.19235 1.19023 1.19535 1.19825 0.93203 0.83516 1.50122 0.89579 1.41883 1.09556 1.04713 1.61746 1.18119 0.87377 0.84230 0.85702 1.90628 1.14656 1.87596 1.58639 1.20116 0.94182 0.93358 1.09121 1.20888 0.91817 0.98680 0.93217 1.19958 0.91499 0.95905 1.12833 1.17983 0.87916 0.73854 0.73649 1.93175 1.90287 1.34970 1.96202 1.93234 1.90278 1.81366 1.51248 1.93236 1.90282 1.81359 1.51249 1.21371 0.93115 0.97912 0.91054 1.21457 0.94369 0.96956 1.02978 1.18297 0.77234 0.93960 0.97237 1.91554 1.29118 1.97270 1.92645 0.90494 0.76679 0.84518 0.79027 0.79097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.62 13.05 21.68 0.28 -47.34 15 2 C -0.01 -0.29 5.50 84.95 0.47 0.17 15 3 Si 1.00 41.77 29.55 68.60 2.03 43.80 15 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.34 -19.18 9.68 84.10 0.81 -18.37 15 8 H 0.09 5.19 7.15 -2.91 -0.02 5.17 15 9 N -0.54 -28.79 5.23 -309.85 -1.62 -30.41 15 10 C 0.46 23.41 7.72 86.71 0.67 24.07 15 11 O -0.63 -36.84 14.91 -4.05 -0.06 -36.90 15 12 C -0.16 -6.40 5.88 -20.05 -0.12 -6.51 15 13 C -0.03 -0.85 9.07 22.53 0.20 -0.65 15 14 C -0.20 -4.93 5.37 -19.90 -0.11 -5.04 15 15 C 0.52 12.08 3.31 71.24 0.24 12.31 15 16 F -0.17 -3.13 15.96 44.97 0.72 -2.42 15 17 F -0.18 -4.64 17.23 44.97 0.77 -3.87 15 18 F -0.18 -4.65 17.24 44.97 0.78 -3.87 15 19 C -0.02 -0.30 9.42 22.32 0.21 -0.09 15 20 C -0.14 -2.93 10.01 22.28 0.22 -2.70 15 21 C 0.15 5.15 7.29 22.68 0.17 5.32 15 22 F -0.13 -5.01 15.55 44.97 0.70 -4.31 15 23 H 0.29 13.87 8.31 -92.71 -0.77 13.10 15 24 H 0.40 19.70 5.93 -92.71 -0.55 19.15 15 25 H 0.14 4.60 6.41 -2.91 -0.02 4.58 15 26 H 0.19 1.88 7.14 -2.91 -0.02 1.86 15 27 H 0.19 2.41 8.06 -2.91 -0.02 2.39 15 Total: -1.00 -68.07 266.28 7.08 -60.99 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.72 Total: 15.79 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 2.76 Total: 8.51 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.34 Total: -77.74 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.06 Total: -36.90 kcal Atomic # 9 Polarization: -17.43 SS G_CDS: 2.97 Total: -14.46 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -68.07 7.08 -60.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094596068.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.133 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds