Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99881 * 2 1 4 4 H 1.08003 * 120.00188 * 202.36232 * 3 2 1 5 5 C 1.38816 * 120.00067 * 22.36553 * 3 2 1 6 6 N 1.31620 * 120.00197 * 11.12343 * 5 3 2 7 7 Si 1.86800 * 120.00037 * 191.12919 * 5 3 2 8 8 H 1.48500 * 109.47157 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47441 * 119.99741 * 7 5 3 10 10 H 1.48498 * 109.47007 * 239.99851 * 7 5 3 11 11 S 1.65605 * 120.00059 * 179.97438 * 2 1 3 12 12 O 1.42099 * 106.39956 * 156.46031 * 11 2 1 13 13 O 1.42094 * 106.40169 * 23.54303 * 11 2 1 14 14 C 1.76199 * 107.21821 * 270.00234 * 11 2 1 15 15 C 1.38255 * 120.00427 * 115.25675 * 14 11 2 16 16 C 1.38206 * 120.07445 * 180.25754 * 15 14 11 17 17 C 1.38261 * 120.07156 * 359.73820 * 16 15 14 18 18 C 1.38377 * 119.99521 * 0.02562 * 17 16 15 19 19 F 1.35100 * 120.03066 * 179.97438 * 18 17 16 20 20 C 1.38374 * 119.99722 * 294.99968 * 14 11 2 21 21 F 1.35097 * 120.03515 * 0.02562 * 20 14 11 22 22 H 1.09006 * 109.46792 * 274.21686 * 1 2 3 23 23 H 1.08997 * 109.46908 * 34.21603 * 1 2 3 24 24 H 1.08998 * 109.46971 * 154.22168 * 1 2 3 25 25 H 0.96996 * 119.99826 * 179.97438 * 6 5 3 26 26 H 1.08004 * 119.96082 * 359.96889 * 15 14 11 27 27 H 1.08002 * 119.96988 * 179.72226 * 16 15 14 28 28 H 1.07999 * 120.00352 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3559 5 6 1.5339 2.3428 0.4574 6 7 0.3823 2.2693 1.0905 7 14 2.3396 4.0042 0.1745 8 1 3.6192 3.8159 -0.5552 9 1 1.4333 4.8636 -0.6286 10 1 2.6073 4.6538 1.4827 11 16 2.2931 -1.4342 0.0006 12 8 3.5760 -1.1570 -0.5439 13 8 1.4115 -2.4067 -0.5434 14 6 2.5538 -1.8851 1.6839 15 6 1.9624 -3.0262 2.1935 16 6 2.1616 -3.3784 3.5150 17 6 2.9572 -2.5934 4.3288 18 6 3.5545 -1.4534 3.8205 19 9 4.3317 -0.6855 4.6152 20 6 3.3549 -1.1001 2.4943 21 9 3.9370 0.0124 1.9958 22 1 -0.3633 0.0756 1.0250 23 1 -0.3633 0.8498 -0.5779 24 1 -0.3633 -0.9254 -0.4469 25 1 -0.0477 3.0777 1.4104 26 1 1.3402 -3.6404 1.5594 27 1 1.6951 -4.2676 3.9125 28 1 3.1125 -2.8698 5.3612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095995644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = -121.848401 kcal Electronic energy + Delta-G solvation = -20252.467843 eV Core-core repulsion = 16646.422910 eV Total energy + Delta-G solvation = -3606.044933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.04640 -48.08750 -38.35329 -35.82957 -35.78016 -34.44221 -31.62340 -30.72511 -29.97229 -26.56779 -23.66060 -23.20896 -22.44136 -18.71103 -18.09358 -17.16750 -17.00501 -16.70886 -16.25544 -15.83168 -15.26190 -14.70285 -14.53558 -14.44450 -14.31506 -13.87880 -13.31783 -12.93602 -12.61655 -12.03122 -11.91933 -11.85364 -11.52624 -11.46385 -11.13118 -11.07504 -10.74573 -10.63189 -10.29509 -10.19490 -9.92750 -9.39372 -9.00993 -8.39239 -8.22201 -6.70690 -4.12330 0.99030 1.27062 1.65316 3.06469 3.11958 3.19605 3.52035 3.90256 4.10539 4.36827 4.64250 4.67039 4.89597 4.97377 5.16905 5.27127 5.68900 5.80020 6.04023 6.23945 6.28388 6.34197 6.40971 6.77635 7.00740 7.05152 7.13909 7.33226 8.16919 8.49258 8.98194 10.23775 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.009475 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.048102 B = 2954.575402 C = 3714.524675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.793 5.793 3 C -0.220 4.220 4 H 0.122 0.878 5 C 0.030 3.970 6 N -0.824 5.824 7 Si 0.930 3.070 8 H -0.258 1.258 9 H -0.274 1.274 10 H -0.275 1.275 11 S 2.500 3.500 12 O -0.976 6.976 13 O -0.999 6.999 14 C -0.668 4.668 15 C -0.023 4.023 16 C -0.133 4.133 17 C -0.102 4.102 18 C 0.035 3.965 19 F -0.134 7.134 20 C 0.168 3.832 21 F -0.103 7.103 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.278 0.722 26 H 0.147 0.853 27 H 0.137 0.863 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -4.263 5.122 6.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.616 5.616 3 C -0.371 4.371 4 H 0.139 0.861 5 C -0.184 4.184 6 N -0.464 5.464 7 Si 0.755 3.245 8 H -0.182 1.182 9 H -0.200 1.200 10 H -0.201 1.201 11 S 2.596 3.404 12 O -0.966 6.966 13 O -0.988 6.988 14 C -0.742 4.742 15 C -0.042 4.042 16 C -0.152 4.152 17 C -0.121 4.121 18 C 0.014 3.986 19 F -0.113 7.113 20 C 0.146 3.854 21 F -0.081 7.081 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.165 0.835 27 H 0.155 0.845 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.101 -4.947 4.579 6.741 hybrid contribution 0.526 1.105 1.197 1.712 sum 0.627 -3.842 5.776 6.965 Atomic orbital electron populations 1.21391 0.78889 1.00300 1.02090 1.54485 1.13389 1.18860 1.74824 1.20308 1.01260 0.82749 1.32823 0.86068 1.25878 0.96401 1.01511 0.94596 1.70108 1.14975 1.30650 1.30715 0.85764 0.79950 0.80026 0.78792 1.18185 1.19954 1.20068 1.13681 0.74255 0.74914 0.77576 1.93370 1.41359 1.84286 1.77555 1.93304 1.65094 1.62002 1.78443 1.32774 1.05386 1.02861 1.33219 1.20904 0.94822 0.93386 0.95129 1.21139 0.99657 1.00423 0.94011 1.21091 0.97086 0.93035 1.00902 1.17790 0.98729 0.93947 0.88097 1.91491 1.72592 1.74352 1.72877 1.17068 0.93549 0.84638 0.90125 1.91660 1.81221 1.48069 1.87156 0.92803 0.90450 0.93398 0.91179 0.83484 0.84504 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.61 8.92 59.85 0.53 3.14 15 2 N -0.79 -19.04 3.31 -66.68 -0.22 -19.26 15 3 C -0.22 -5.44 8.24 -15.06 -0.12 -5.57 15 4 H 0.12 3.05 7.16 -52.48 -0.38 2.68 15 5 C 0.03 0.70 5.13 -17.43 -0.09 0.61 15 6 N -0.82 -19.49 10.57 55.49 0.59 -18.90 15 7 Si 0.93 18.49 29.57 -169.99 -5.03 13.47 15 8 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 9 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 10 H -0.28 -5.49 7.11 56.52 0.40 -5.08 15 11 S 2.50 59.47 5.30 -107.50 -0.57 58.90 15 12 O -0.98 -25.76 16.22 -57.17 -0.93 -26.68 15 13 O -1.00 -24.10 15.53 -57.17 -0.89 -24.99 15 14 C -0.67 -14.23 5.91 -39.52 -0.23 -14.46 15 15 C -0.02 -0.41 9.55 -39.59 -0.38 -0.79 15 16 C -0.13 -1.92 10.04 -39.58 -0.40 -2.32 15 17 C -0.10 -1.52 10.02 -39.52 -0.40 -1.92 15 18 C 0.03 0.65 7.31 -39.36 -0.29 0.37 15 19 F -0.13 -2.49 17.18 2.25 0.04 -2.45 15 20 C 0.17 3.63 7.22 -39.36 -0.28 3.35 15 21 F -0.10 -2.43 14.98 2.25 0.03 -2.40 15 22 H 0.05 1.18 7.42 -51.93 -0.39 0.80 15 23 H 0.08 1.69 7.18 -51.93 -0.37 1.32 15 24 H 0.05 0.97 6.93 -51.93 -0.36 0.61 15 25 H 0.28 6.10 8.31 -40.82 -0.34 5.76 15 26 H 0.15 2.39 7.33 -52.48 -0.38 2.00 15 27 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.14 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -28.83 266.77 -6.47 -35.29 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -1.86 Total: 0.59 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.66 Total: -17.59 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.37 Total: -38.16 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.82 Total: -51.67 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.85 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 59.47 SS G_CDS: -0.57 Total: 58.90 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.83 -6.47 -35.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095995644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.555 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds