Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99881 * 2 1 4 4 H 1.08003 * 120.00188 * 202.36232 * 3 2 1 5 5 C 1.38816 * 120.00067 * 22.36553 * 3 2 1 6 6 N 1.31620 * 120.00197 * 11.12343 * 5 3 2 7 7 Si 1.86800 * 120.00037 * 191.12919 * 5 3 2 8 8 H 1.48500 * 109.47157 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47441 * 119.99741 * 7 5 3 10 10 H 1.48498 * 109.47007 * 239.99851 * 7 5 3 11 11 S 1.65605 * 120.00059 * 179.97438 * 2 1 3 12 12 O 1.42099 * 106.39956 * 156.46031 * 11 2 1 13 13 O 1.42094 * 106.40169 * 23.54303 * 11 2 1 14 14 C 1.76199 * 107.21821 * 270.00234 * 11 2 1 15 15 C 1.38255 * 120.00427 * 115.25675 * 14 11 2 16 16 C 1.38206 * 120.07445 * 180.25754 * 15 14 11 17 17 C 1.38261 * 120.07156 * 359.73820 * 16 15 14 18 18 C 1.38377 * 119.99521 * 0.02562 * 17 16 15 19 19 F 1.35100 * 120.03066 * 179.97438 * 18 17 16 20 20 C 1.38374 * 119.99722 * 294.99968 * 14 11 2 21 21 F 1.35097 * 120.03515 * 0.02562 * 20 14 11 22 22 H 1.09006 * 109.46792 * 274.21686 * 1 2 3 23 23 H 1.08997 * 109.46908 * 34.21603 * 1 2 3 24 24 H 1.08998 * 109.46971 * 154.22168 * 1 2 3 25 25 H 0.96996 * 119.99826 * 179.97438 * 6 5 3 26 26 H 1.08004 * 119.96082 * 359.96889 * 15 14 11 27 27 H 1.08002 * 119.96988 * 179.72226 * 16 15 14 28 28 H 1.07999 * 120.00352 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3559 5 6 1.5339 2.3428 0.4574 6 7 0.3823 2.2693 1.0905 7 14 2.3396 4.0042 0.1745 8 1 3.6192 3.8159 -0.5552 9 1 1.4333 4.8636 -0.6286 10 1 2.6073 4.6538 1.4827 11 16 2.2931 -1.4342 0.0006 12 8 3.5760 -1.1570 -0.5439 13 8 1.4115 -2.4067 -0.5434 14 6 2.5538 -1.8851 1.6839 15 6 1.9624 -3.0262 2.1935 16 6 2.1616 -3.3784 3.5150 17 6 2.9572 -2.5934 4.3288 18 6 3.5545 -1.4534 3.8205 19 9 4.3317 -0.6855 4.6152 20 6 3.3549 -1.1001 2.4943 21 9 3.9370 0.0124 1.9958 22 1 -0.3633 0.0756 1.0250 23 1 -0.3633 0.8498 -0.5779 24 1 -0.3633 -0.9254 -0.4469 25 1 -0.0477 3.0777 1.4104 26 1 1.3402 -3.6404 1.5594 27 1 1.6951 -4.2676 3.9125 28 1 3.1125 -2.8698 5.3612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095995644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -141.126590 kcal Electronic energy + Delta-G solvation = -20253.303808 eV Core-core repulsion = 16646.422910 eV Total energy + Delta-G solvation = -3606.880898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.57930 -49.66171 -39.74363 -37.81219 -37.57702 -36.46295 -33.40491 -32.15072 -31.37516 -28.35173 -25.45475 -24.68624 -23.86807 -20.49156 -19.72114 -18.91924 -18.66825 -18.26330 -17.97267 -17.38243 -16.88620 -16.44988 -16.22034 -16.00804 -15.77670 -15.41209 -15.12830 -14.62969 -14.10734 -13.75865 -13.38394 -13.31760 -13.17071 -13.04660 -13.00924 -12.74789 -12.72649 -12.37378 -12.16582 -11.93746 -11.64199 -11.14207 -10.44607 -10.01017 -9.82654 -8.44372 -5.98427 -0.46536 -0.16222 -0.14293 1.46908 1.47906 1.61092 2.10091 2.27221 2.53727 2.72776 2.87302 3.10502 3.25976 3.59344 3.74975 3.91878 4.12704 4.43089 4.55084 4.69579 4.89526 4.94692 5.01916 5.05688 5.21954 5.33957 5.58236 5.68084 6.36616 6.69971 7.18249 8.52212 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.009475 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.048102 B = 2954.575402 C = 3714.524675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.812 5.812 3 C -0.260 4.260 4 H 0.102 0.898 5 C 0.002 3.998 6 N -0.850 5.850 7 Si 0.983 3.017 8 H -0.264 1.264 9 H -0.261 1.261 10 H -0.274 1.274 11 S 2.535 3.465 12 O -1.010 7.010 13 O -1.005 7.005 14 C -0.698 4.698 15 C -0.029 4.029 16 C -0.108 4.108 17 C -0.076 4.076 18 C 0.022 3.978 19 F -0.137 7.137 20 C 0.127 3.873 21 F -0.128 7.128 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.282 0.718 26 H 0.162 0.838 27 H 0.196 0.804 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -6.189 7.250 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.637 5.637 3 C -0.408 4.408 4 H 0.120 0.880 5 C -0.208 4.208 6 N -0.490 5.490 7 Si 0.805 3.195 8 H -0.188 1.188 9 H -0.186 1.186 10 H -0.199 1.199 11 S 2.634 3.366 12 O -1.000 7.000 13 O -0.994 6.994 14 C -0.778 4.778 15 C -0.048 4.048 16 C -0.126 4.126 17 C -0.095 4.095 18 C 0.002 3.998 19 F -0.116 7.116 20 C 0.106 3.894 21 F -0.106 7.106 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.179 0.821 27 H 0.213 0.787 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.508 -6.811 6.662 9.541 hybrid contribution 0.741 1.371 0.684 1.702 sum 0.233 -5.439 7.346 9.144 Atomic orbital electron populations 1.21328 0.78021 1.00664 1.01770 1.54132 1.13921 1.18489 1.77155 1.20113 1.00876 0.83909 1.35890 0.88006 1.26421 0.96793 1.03566 0.94067 1.70139 1.15746 1.31441 1.31660 0.85008 0.79048 0.76806 0.78637 1.18832 1.18560 1.19909 1.11306 0.73328 0.74399 0.77558 1.93337 1.42860 1.84915 1.78840 1.93298 1.65127 1.61960 1.79027 1.32201 1.08509 1.05640 1.31408 1.21294 0.94188 0.92012 0.97278 1.21756 0.97606 1.01255 0.91978 1.21748 0.94251 0.90378 1.03104 1.18098 0.99414 0.95265 0.87037 1.91482 1.72792 1.74778 1.72551 1.17520 0.95161 0.84740 0.91985 1.91590 1.81868 1.49461 1.87718 0.93308 0.90967 0.92130 0.90739 0.82062 0.78720 0.79149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.71 8.92 127.77 1.14 6.85 15 2 N -0.81 -40.29 3.31 -364.88 -1.21 -41.50 15 3 C -0.26 -13.47 8.24 84.04 0.69 -12.77 15 4 H 0.10 5.50 7.16 -2.91 -0.02 5.48 15 5 C 0.00 0.11 5.13 84.86 0.44 0.54 15 6 N -0.85 -41.12 10.57 21.65 0.23 -40.89 15 7 Si 0.98 38.92 29.57 68.60 2.03 40.95 15 8 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 9 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 11 S 2.54 122.60 5.30 -56.49 -0.30 122.30 15 12 O -1.01 -55.22 16.22 -128.00 -2.08 -57.30 15 13 O -1.00 -48.04 15.53 -128.00 -1.99 -50.02 15 14 C -0.70 -29.30 5.91 22.31 0.13 -29.17 15 15 C -0.03 -0.92 9.55 22.27 0.21 -0.71 15 16 C -0.11 -2.47 10.04 22.27 0.22 -2.24 15 17 C -0.08 -1.87 10.02 22.31 0.22 -1.65 15 18 C 0.02 0.79 7.31 22.41 0.16 0.95 15 19 F -0.14 -4.88 17.18 44.97 0.77 -4.11 15 20 C 0.13 5.53 7.22 22.41 0.16 5.69 15 21 F -0.13 -6.32 14.98 44.97 0.67 -5.65 15 22 H 0.05 2.18 7.42 -2.38 -0.02 2.17 15 23 H 0.07 3.25 7.18 -2.39 -0.02 3.23 15 24 H 0.06 2.47 6.93 -2.39 -0.02 2.45 15 25 H 0.28 12.60 8.31 -92.71 -0.77 11.83 15 26 H 0.16 4.66 7.33 -2.91 -0.02 4.64 15 27 H 0.20 2.34 8.06 -2.91 -0.02 2.31 15 28 H 0.19 2.84 8.06 -2.91 -0.02 2.82 15 Total: -1.00 -65.34 266.77 2.73 -62.61 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.21 Total: 6.13 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.38 Total: -32.51 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -0.98 Total: -82.39 kcal Atomic # 8 Polarization: -103.26 SS G_CDS: -4.06 Total: -107.32 kcal Atomic # 9 Polarization: -11.21 SS G_CDS: 1.45 Total: -9.76 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: 122.60 SS G_CDS: -0.30 Total: 122.30 kcal Total: -65.34 2.73 -62.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095995644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.516 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds