Wall clock time and date at job start Mon Mar 30 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.46891 * 2 1 4 4 C 1.36938 * 120.00277 * 276.04904 * 3 2 1 5 5 H 1.07998 * 120.00036 * 36.02071 * 4 3 2 6 6 C 1.38818 * 120.00331 * 216.01517 * 4 3 2 7 7 N 1.31618 * 119.99508 * 20.94777 * 6 4 3 8 8 Si 1.86794 * 120.00130 * 200.94747 * 6 4 3 9 9 H 1.48499 * 109.47045 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47211 * 120.00041 * 8 6 4 11 11 H 1.48501 * 109.47107 * 240.00091 * 8 6 4 12 12 C 1.46500 * 120.00154 * 96.05356 * 3 2 1 13 13 C 1.50704 * 109.47249 * 270.00093 * 12 3 2 14 14 C 1.34694 * 126.59165 * 270.02032 * 13 12 3 15 15 Cl 1.73598 * 125.98752 * 359.96433 * 14 13 12 16 16 N 1.34233 * 108.02820 * 180.22337 * 14 13 12 17 17 C 1.30639 * 109.28004 * 359.56449 * 16 14 13 18 18 Cl 1.73600 * 125.65060 * 180.16959 * 17 16 14 19 19 N 1.35078 * 108.69674 * 0.43565 * 17 16 14 20 20 C 1.46498 * 126.40761 * 179.71163 * 19 17 16 21 21 H 1.08998 * 109.47408 * 59.99716 * 1 2 3 22 22 H 1.09005 * 109.47094 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47025 * 299.99527 * 1 2 3 24 24 H 1.09002 * 109.46868 * 239.99942 * 2 1 3 25 25 H 1.08998 * 109.47408 * 120.00284 * 2 1 3 26 26 H 0.97004 * 119.99464 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47747 * 149.99456 * 12 3 2 28 28 H 1.09003 * 109.46865 * 29.99317 * 12 3 2 29 29 H 1.09000 * 109.47186 * 270.02629 * 20 19 17 30 30 H 1.09000 * 109.47502 * 30.02529 * 20 19 17 31 31 H 1.09005 * 109.47218 * 150.02998 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1287 2.0684 -1.1793 5 1 1.4006 1.9173 -1.9625 6 6 3.1764 2.9593 -1.3680 7 7 4.2658 2.8585 -0.6364 8 14 3.0400 4.3012 -2.6604 9 1 1.7245 4.2002 -3.3418 10 1 3.1585 5.6302 -2.0085 11 1 4.1284 4.1402 -3.6578 12 6 2.3886 2.0272 1.2616 13 6 1.1834 2.7196 1.8441 14 6 0.7995 3.9905 1.6164 15 17 1.6110 5.1333 0.5922 16 7 -0.3173 4.2203 2.3247 17 6 -0.6457 3.1365 2.9760 18 17 -2.0218 2.9611 4.0198 19 7 0.2661 2.1768 2.7074 20 6 0.2741 0.8117 3.2390 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 4.9977 3.4813 -0.7680 27 1 3.1749 2.7594 1.0779 28 1 2.7494 1.2747 1.9629 29 1 0.8415 0.7874 4.1694 30 1 -0.7497 0.4899 3.4295 31 1 0.7366 0.1421 2.5138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130849501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:45 Heat of formation + Delta-G solvation = 73.060343 kcal Electronic energy + Delta-G solvation = -18247.553255 eV Core-core repulsion = 15232.005925 eV Total energy + Delta-G solvation = -3015.547330 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 277.044 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70844 -36.81462 -36.10967 -35.71936 -33.68910 -31.94462 -30.60636 -28.29589 -26.78308 -25.45115 -23.57318 -21.14855 -20.74682 -19.64131 -17.28504 -16.68196 -15.71555 -15.08704 -14.80428 -14.28871 -13.85939 -13.67494 -13.33300 -13.14496 -12.73647 -12.25929 -12.01501 -11.86088 -11.51546 -11.36235 -11.23033 -10.93391 -10.73350 -10.63045 -10.38911 -10.17460 -10.08283 -9.95182 -9.54616 -9.16216 -8.53648 -7.64158 -6.75934 -5.89584 -3.43859 1.53746 2.23786 2.57964 3.27099 3.35963 3.43034 3.48793 3.54493 4.45745 4.85788 5.19686 5.21787 5.39339 5.43997 5.47781 5.80527 5.84752 6.12712 6.20832 6.28648 6.39983 6.61145 6.69026 6.75106 6.99427 7.20025 7.43157 7.78855 8.10188 8.41307 9.06518 9.69877 10.23376 11.13585 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.008292 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.327670 B = 3376.111257 C = 4190.032481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.140 3.860 3 N -0.569 5.569 4 C -0.259 4.259 5 H 0.061 0.939 6 C 0.033 3.967 7 N -0.883 5.883 8 Si 0.881 3.119 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.289 1.289 12 C 0.201 3.799 13 C 0.044 3.956 14 C 0.050 3.950 15 Cl 0.004 6.996 16 N -0.462 5.462 17 C 0.227 3.773 18 Cl 0.018 6.982 19 N -0.442 5.442 20 C 0.067 3.933 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.257 0.743 27 H 0.135 0.865 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 -4.199 8.504 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 N -0.288 5.288 4 C -0.388 4.388 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.524 5.524 8 Si 0.710 3.290 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.217 1.217 12 C 0.072 3.928 13 C -0.075 4.075 14 C -0.104 4.104 15 Cl 0.032 6.968 16 N -0.186 5.186 17 C -0.058 4.058 18 Cl 0.045 6.955 19 N -0.131 5.131 20 C -0.075 4.075 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.832 -3.460 8.539 11.470 hybrid contribution -0.093 0.194 -0.559 0.599 sum -6.924 -3.266 7.980 11.059 Atomic orbital electron populations 1.22448 1.00090 0.99070 1.01641 1.20927 0.91641 0.86939 0.99090 1.43755 1.75228 1.07809 1.01992 1.18936 1.06001 1.20548 0.93337 0.92160 1.24936 0.93950 1.00305 0.97589 1.69863 1.04040 1.36652 1.41889 0.86541 0.77929 0.82887 0.81628 1.19796 1.20816 1.21652 1.19903 0.89782 0.97489 0.85577 1.23319 0.96852 0.93550 0.93768 1.20217 0.96032 0.91279 1.02872 1.98363 1.75314 1.59176 1.63967 1.69676 1.14166 1.24295 1.10468 1.22503 0.92737 0.86912 1.03682 1.98363 1.37338 1.97076 1.62736 1.45154 1.20204 1.11590 1.36159 1.22182 1.04100 0.80588 1.00637 0.92933 0.94310 0.93899 0.93017 0.94804 0.93274 0.84837 0.94348 0.90408 0.89727 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.78 37.16 0.36 -2.59 16 2 C 0.14 2.66 5.91 -4.05 -0.02 2.63 16 3 N -0.57 -12.95 2.43 -174.61 -0.42 -13.38 16 4 C -0.26 -6.65 9.47 -15.06 -0.14 -6.79 16 5 H 0.06 1.61 7.91 -52.49 -0.42 1.19 16 6 C 0.03 0.86 4.32 -17.43 -0.08 0.78 16 7 N -0.88 -23.43 11.33 55.49 0.63 -22.80 16 8 Si 0.88 21.31 28.44 -169.99 -4.83 16.47 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.20 4.35 5.27 -5.19 -0.03 4.33 16 13 C 0.04 0.91 6.41 -81.46 -0.52 0.39 16 14 C 0.05 1.11 7.70 -17.76 -0.14 0.98 16 15 Cl 0.00 0.08 27.05 -51.86 -1.40 -1.32 16 16 N -0.46 -9.74 11.26 -8.89 -0.10 -9.85 16 17 C 0.23 4.09 8.51 -90.23 -0.77 3.32 16 18 Cl 0.02 0.24 28.77 -51.86 -1.49 -1.25 16 19 N -0.44 -7.59 2.70 -117.72 -0.32 -7.91 16 20 C 0.07 0.83 9.48 59.85 0.57 1.40 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 0.73 5.37 -51.93 -0.28 0.45 16 24 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 25 H 0.03 0.57 6.98 -51.93 -0.36 0.21 16 26 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.13 3.30 5.17 -51.93 -0.27 3.03 16 28 H 0.04 0.75 7.59 -51.93 -0.39 0.36 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 31 H 0.10 1.24 5.15 -51.93 -0.27 0.98 16 LS Contribution 286.94 15.07 4.32 4.32 Total: -1.00 -28.22 286.94 -7.60 -35.82 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -3.21 Total: -4.55 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.76 Total: 4.44 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.21 Total: -53.93 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.83 Total: 16.47 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -2.89 Total: -2.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.22 -7.60 -35.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130849501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.881 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds