Wall clock time and date at job start Mon Mar 30 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.46891 * 2 1 4 4 C 1.36938 * 120.00277 * 276.04904 * 3 2 1 5 5 H 1.07998 * 120.00036 * 36.02071 * 4 3 2 6 6 C 1.38818 * 120.00331 * 216.01517 * 4 3 2 7 7 N 1.31618 * 119.99508 * 20.94777 * 6 4 3 8 8 Si 1.86794 * 120.00130 * 200.94747 * 6 4 3 9 9 H 1.48499 * 109.47045 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47211 * 120.00041 * 8 6 4 11 11 H 1.48501 * 109.47107 * 240.00091 * 8 6 4 12 12 C 1.46500 * 120.00154 * 96.05356 * 3 2 1 13 13 C 1.50704 * 109.47249 * 270.00093 * 12 3 2 14 14 C 1.34694 * 126.59165 * 270.02032 * 13 12 3 15 15 Cl 1.73598 * 125.98752 * 359.96433 * 14 13 12 16 16 N 1.34233 * 108.02820 * 180.22337 * 14 13 12 17 17 C 1.30639 * 109.28004 * 359.56449 * 16 14 13 18 18 Cl 1.73600 * 125.65060 * 180.16959 * 17 16 14 19 19 N 1.35078 * 108.69674 * 0.43565 * 17 16 14 20 20 C 1.46498 * 126.40761 * 179.71163 * 19 17 16 21 21 H 1.08998 * 109.47408 * 59.99716 * 1 2 3 22 22 H 1.09005 * 109.47094 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47025 * 299.99527 * 1 2 3 24 24 H 1.09002 * 109.46868 * 239.99942 * 2 1 3 25 25 H 1.08998 * 109.47408 * 120.00284 * 2 1 3 26 26 H 0.97004 * 119.99464 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47747 * 149.99456 * 12 3 2 28 28 H 1.09003 * 109.46865 * 29.99317 * 12 3 2 29 29 H 1.09000 * 109.47186 * 270.02629 * 20 19 17 30 30 H 1.09000 * 109.47502 * 30.02529 * 20 19 17 31 31 H 1.09005 * 109.47218 * 150.02998 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1287 2.0684 -1.1793 5 1 1.4006 1.9173 -1.9625 6 6 3.1764 2.9593 -1.3680 7 7 4.2658 2.8585 -0.6364 8 14 3.0400 4.3012 -2.6604 9 1 1.7245 4.2002 -3.3418 10 1 3.1585 5.6302 -2.0085 11 1 4.1284 4.1402 -3.6578 12 6 2.3886 2.0272 1.2616 13 6 1.1834 2.7196 1.8441 14 6 0.7995 3.9905 1.6164 15 17 1.6110 5.1333 0.5922 16 7 -0.3173 4.2203 2.3247 17 6 -0.6457 3.1365 2.9760 18 17 -2.0218 2.9611 4.0198 19 7 0.2661 2.1768 2.7074 20 6 0.2741 0.8117 3.2390 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 4.9977 3.4813 -0.7680 27 1 3.1749 2.7594 1.0779 28 1 2.7494 1.2747 1.9629 29 1 0.8415 0.7874 4.1694 30 1 -0.7497 0.4899 3.4295 31 1 0.7366 0.1421 2.5138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130849501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:45 Heat of formation + Delta-G solvation = 57.720941 kcal Electronic energy + Delta-G solvation = -18248.218421 eV Core-core repulsion = 15232.005925 eV Total energy + Delta-G solvation = -3016.212497 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 277.044 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.17154 -38.12284 -37.75603 -37.36995 -35.07222 -33.74593 -32.18426 -29.92646 -27.96188 -27.20323 -25.22209 -22.65627 -22.29077 -21.18139 -18.87488 -18.25182 -17.13652 -16.89722 -16.28585 -15.83810 -15.55658 -15.31867 -14.79084 -14.59746 -14.01947 -13.59877 -13.39989 -13.29765 -13.21055 -12.90253 -12.68588 -12.58617 -12.38063 -12.28034 -12.11125 -11.96381 -11.79564 -11.56426 -11.13331 -10.59040 -10.45861 -9.19713 -8.60380 -7.84398 -5.39687 0.18672 0.77459 1.02057 1.42502 1.48575 1.52426 1.71673 2.16656 2.52222 3.31091 3.72991 3.77411 3.95950 4.20777 4.33004 4.39466 4.59716 4.66585 4.80489 4.85846 5.02476 5.08758 5.13862 5.27975 5.56305 5.64874 5.76983 5.87599 6.48379 6.62918 7.18778 7.85400 8.34443 9.14860 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.008292 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.327670 B = 3376.111257 C = 4190.032481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 N -0.583 5.583 4 C -0.259 4.259 5 H 0.043 0.957 6 C 0.011 3.989 7 N -0.898 5.898 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.289 1.289 12 C 0.208 3.792 13 C 0.040 3.960 14 C 0.027 3.973 15 Cl -0.016 7.016 16 N -0.496 5.496 17 C 0.237 3.763 18 Cl 0.059 6.941 19 N -0.434 5.434 20 C 0.056 3.944 21 H 0.023 0.977 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.254 0.746 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -5.896 10.219 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 N -0.302 5.302 4 C -0.389 4.389 5 H 0.061 0.939 6 C -0.189 4.189 7 N -0.541 5.541 8 Si 0.735 3.265 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.216 1.216 12 C 0.079 3.921 13 C -0.081 4.081 14 C -0.127 4.127 15 Cl 0.012 6.988 16 N -0.220 5.220 17 C -0.050 4.050 18 Cl 0.086 6.914 19 N -0.121 5.121 20 C -0.084 4.084 21 H 0.042 0.958 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.122 0.878 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.153 -5.192 10.272 14.105 hybrid contribution 0.173 0.642 -0.961 1.168 sum -7.980 -4.550 9.311 13.080 Atomic orbital electron populations 1.22286 0.98414 1.00872 1.00311 1.21066 0.92779 0.85061 0.99927 1.43888 1.75612 1.09273 1.01443 1.18891 1.05105 1.20804 0.94089 0.93905 1.25142 0.94044 1.01195 0.98488 1.69919 1.04320 1.37082 1.42806 0.86156 0.77479 0.82063 0.80774 1.20264 1.21036 1.21629 1.19632 0.89548 0.97256 0.85630 1.22905 0.97213 0.93168 0.94822 1.20379 0.96951 0.91735 1.03681 1.98341 1.75806 1.59970 1.64698 1.69619 1.14464 1.26181 1.11779 1.22887 0.93207 0.86266 1.02635 1.98383 1.34970 1.96878 1.61174 1.45288 1.18821 1.13023 1.34955 1.22612 1.06403 0.77835 1.01595 0.95765 0.90868 0.93645 0.94173 0.91921 0.93645 0.87805 0.92269 0.87691 0.87152 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.78 71.98 0.70 -4.34 16 2 C 0.14 4.90 5.91 86.38 0.51 5.41 16 3 N -0.58 -26.03 2.43 -706.34 -1.72 -27.75 16 4 C -0.26 -13.38 9.47 84.03 0.80 -12.58 16 5 H 0.04 2.33 7.91 -2.91 -0.02 2.31 16 6 C 0.01 0.55 4.32 84.86 0.37 0.92 16 7 N -0.90 -48.16 11.33 21.65 0.25 -47.92 16 8 Si 0.91 44.07 28.44 68.60 1.95 46.02 16 9 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 12 C 0.21 8.79 5.27 85.63 0.45 9.24 16 13 C 0.04 1.57 6.41 40.91 0.26 1.83 16 14 C 0.03 1.16 7.70 83.51 0.64 1.81 16 15 Cl -0.02 -0.74 27.05 -2.72 -0.07 -0.81 16 16 N -0.50 -20.43 11.26 -182.05 -2.05 -22.48 16 17 C 0.24 7.95 8.51 180.21 1.53 9.48 16 18 Cl 0.06 1.42 28.77 -2.72 -0.08 1.35 16 19 N -0.43 -13.69 2.70 -526.35 -1.42 -15.11 16 20 C 0.06 1.13 9.48 127.77 1.21 2.34 16 21 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.04 1.39 5.37 -2.39 -0.01 1.38 16 24 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 25 H 0.06 1.89 6.98 -2.39 -0.02 1.87 16 26 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 27 H 0.10 5.14 5.17 -2.39 -0.01 5.13 16 28 H 0.06 2.20 7.59 -2.39 -0.02 2.18 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.71 7.81 -2.39 -0.02 1.69 16 31 H 0.10 2.07 5.15 -2.38 -0.01 2.06 16 Total: -1.00 -61.25 286.94 4.49 -56.75 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: 1.16 Total: -4.17 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.48 Total: 14.11 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -4.94 Total: -113.25 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.95 Total: 46.02 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.15 Total: 0.53 kcal Total: -61.25 4.49 -56.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130849501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.476 kcal (2) G-P(sol) polarization free energy of solvation -61.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds