Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48502 * 109.46899 * 240.00124 * 3 2 1 5 5 H 1.48499 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46776 * 120.00369 * 3 2 1 7 7 C 1.39047 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99540 * 179.97438 * 7 2 1 9 9 N 1.36874 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99653 * 179.97438 * 9 7 2 11 11 O 1.21597 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.47731 * 120.00061 * 180.02562 * 10 9 7 13 13 C 1.39645 * 120.13311 * 0.02562 * 12 10 9 14 14 C 1.38149 * 119.81627 * 179.97438 * 13 12 10 15 15 F 1.35101 * 119.95123 * 179.97438 * 14 13 12 16 16 C 1.38615 * 120.09869 * 359.97438 * 14 13 12 17 17 C 1.38312 * 120.28311 * 359.97438 * 16 14 13 18 18 C 1.50696 * 119.91192 * 180.02562 * 17 16 14 19 19 F 1.39905 * 109.47253 * 269.97872 * 18 17 16 20 20 F 1.39897 * 109.47430 * 29.98282 * 18 17 16 21 21 F 1.39905 * 109.47379 * 149.98261 * 18 17 16 22 22 C 1.37968 * 120.18041 * 0.02562 * 17 16 14 23 23 H 0.97002 * 119.99562 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00111 * 0.02562 * 9 7 2 25 25 H 1.07999 * 120.09203 * 359.69996 * 13 12 10 26 26 H 1.08000 * 119.86021 * 180.02562 * 16 14 13 27 27 H 1.08001 * 120.05473 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6965 -1.2125 5 1 1.2826 2.7465 0.0006 6 1 3.1015 1.6964 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0890 -1.2041 -0.0010 9 7 1.3245 -2.3896 -0.0005 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5566 -0.0021 12 6 1.2598 -4.8361 -0.0022 13 6 -0.1366 -4.8394 -0.0022 14 6 -0.8206 -6.0397 -0.0032 15 9 -2.1716 -6.0461 -0.0027 16 6 -0.1229 -7.2374 -0.0048 17 6 1.2602 -7.2389 -0.0059 18 6 2.0103 -8.5460 -0.0082 19 9 2.2438 -8.9520 1.3101 20 9 1.2510 -9.5182 -0.6681 21 9 3.2325 -8.3811 -0.6688 22 6 1.9551 -6.0470 -0.0049 23 1 -0.4849 0.8401 0.0004 24 1 0.3546 -2.3896 -0.0005 25 1 -0.6803 -3.9063 0.0032 26 1 -0.6616 -8.1735 -0.0061 27 1 3.0351 -6.0505 -0.0061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131433569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = -227.043655 kcal Electronic energy + Delta-G solvation = -20731.086331 eV Core-core repulsion = 16566.639404 eV Total energy + Delta-G solvation = -4164.446928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.047 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.24054 -50.07628 -48.74289 -48.69422 -41.08348 -39.24552 -36.21393 -33.94746 -32.88623 -31.91455 -27.61562 -27.19757 -24.84568 -23.38854 -21.63799 -20.42093 -19.64521 -19.56346 -19.34270 -18.02248 -17.55302 -17.31360 -16.89513 -16.80177 -16.58245 -15.80092 -15.63353 -15.53871 -15.48703 -15.13162 -14.93044 -14.84098 -14.77176 -14.39410 -13.82111 -13.58161 -13.53720 -13.11706 -12.96514 -12.77560 -12.45842 -12.14185 -11.64637 -10.67798 -10.57768 -10.20164 -10.05294 -8.62577 -6.06559 -0.59452 -0.29879 1.36225 1.41796 1.46570 1.53115 1.68091 2.21910 2.45130 2.48544 2.74090 2.87226 3.17524 3.19726 3.32131 3.60989 3.73706 3.86059 3.90517 4.30602 4.52193 4.65584 4.79388 5.00399 5.29787 5.42043 5.83572 6.39578 6.94367 7.31376 7.87781 8.53628 Molecular weight = 277.05amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.004610 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.209673 B = 6072.292019 C = 6935.002011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.090 0.910 9 N -0.542 5.542 10 C 0.458 3.542 11 O -0.629 6.629 12 C -0.084 4.084 13 C -0.104 4.104 14 C 0.105 3.895 15 F -0.126 7.126 16 C -0.083 4.083 17 C -0.159 4.159 18 C 0.523 3.477 19 F -0.173 7.173 20 F -0.167 7.167 21 F -0.176 7.176 22 C -0.040 4.040 23 H 0.285 0.715 24 H 0.399 0.601 25 H 0.149 0.851 26 H 0.182 0.818 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -13.997 -0.020 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.207 4.207 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.107 0.893 9 N -0.175 5.175 10 C 0.248 3.752 11 O -0.518 6.518 12 C -0.088 4.088 13 C -0.124 4.124 14 C 0.086 3.914 15 F -0.104 7.104 16 C -0.102 4.102 17 C -0.161 4.161 18 C 0.469 3.531 19 F -0.155 7.155 20 F -0.149 7.149 21 F -0.158 7.158 22 C -0.060 4.060 23 H 0.095 0.905 24 H 0.235 0.765 25 H 0.166 0.834 26 H 0.199 0.801 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.081 -13.817 -0.019 14.157 hybrid contribution -0.189 0.783 0.003 0.806 sum -3.270 -13.034 -0.016 13.438 Atomic orbital electron populations 1.69622 1.07079 1.30358 1.47180 1.26214 0.96585 1.02802 0.95148 0.84890 0.77839 0.75798 0.79308 1.19335 1.19185 1.19344 1.19832 0.93358 0.83460 1.49961 0.89254 1.41904 1.09722 1.04753 1.61153 1.18100 0.87310 0.84060 0.85773 1.90594 1.14710 1.87524 1.59011 1.19711 0.92867 0.93599 1.02585 1.21625 0.93464 0.99054 0.98271 1.17123 0.77371 0.93252 1.03681 1.91558 1.27726 1.97260 1.93896 1.21142 0.92304 0.99206 0.97592 1.19617 0.94418 0.92027 1.10029 1.17852 0.77192 0.84087 0.73966 1.93244 1.94668 1.91592 1.35951 1.93209 1.75466 1.65228 1.80965 1.93221 1.45913 1.95551 1.81086 1.20989 1.01530 0.89649 0.93815 0.90476 0.76508 0.83365 0.80057 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.91 13.05 21.68 0.28 -45.63 15 2 C 0.00 -0.25 5.50 84.96 0.47 0.22 15 3 Si 1.00 40.31 29.55 68.60 2.03 42.34 15 4 H -0.27 -10.71 7.11 99.48 0.71 -10.01 15 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 15 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 7 C -0.34 -18.32 9.68 84.10 0.81 -17.50 15 8 H 0.09 5.13 7.15 -2.91 -0.02 5.11 15 9 N -0.54 -27.08 5.23 -309.72 -1.62 -28.70 15 10 C 0.46 21.96 7.72 86.75 0.67 22.63 15 11 O -0.63 -34.58 15.92 -4.02 -0.06 -34.64 15 12 C -0.08 -3.08 5.87 -20.09 -0.12 -3.20 15 13 C -0.10 -3.22 9.52 22.59 0.22 -3.00 15 14 C 0.11 2.68 7.29 22.34 0.16 2.85 15 15 F -0.13 -3.11 17.26 44.97 0.78 -2.33 15 16 C -0.08 -1.83 9.37 22.38 0.21 -1.62 15 17 C -0.16 -4.03 5.45 -19.91 -0.11 -4.14 15 18 C 0.52 12.02 3.36 71.23 0.24 12.25 15 19 F -0.17 -4.04 17.30 44.97 0.78 -3.26 15 20 F -0.17 -3.42 16.45 44.97 0.74 -2.68 15 21 F -0.18 -4.47 16.45 44.97 0.74 -3.73 15 22 C -0.04 -1.29 8.94 22.54 0.20 -1.09 15 23 H 0.29 13.48 8.31 -92.71 -0.77 12.71 15 24 H 0.40 18.62 5.93 -92.71 -0.55 18.07 15 25 H 0.15 4.59 6.40 -2.91 -0.02 4.57 15 26 H 0.18 2.77 7.59 -2.91 -0.02 2.75 15 27 H 0.14 4.85 7.19 -2.91 -0.02 4.83 15 Total: -1.00 -59.75 267.81 7.13 -52.62 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.72 Total: 18.61 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 2.75 Total: 7.39 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -1.34 Total: -74.33 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.06 Total: -34.64 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 3.03 Total: -11.99 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -59.75 7.13 -52.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131433569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.427 kcal (2) G-P(sol) polarization free energy of solvation -59.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds