Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38201 * 119.99842 * 2 1 4 4 C 1.38430 * 120.00108 * 180.02562 * 3 2 1 5 5 F 1.35102 * 120.00554 * 179.97438 * 4 3 2 6 6 C 1.38478 * 119.99700 * 359.97438 * 4 3 2 7 7 S 1.76198 * 120.00155 * 180.02562 * 6 4 3 8 8 O 1.42101 * 106.40325 * 48.74661 * 7 6 4 9 9 O 1.42094 * 106.40192 * 181.67418 * 7 6 4 10 10 N 1.65603 * 107.21590 * 295.21389 * 7 6 4 11 11 C 1.36943 * 119.99654 * 296.29217 * 10 7 6 12 12 H 1.08001 * 119.99995 * 5.08451 * 11 10 7 13 13 C 1.38817 * 119.99607 * 185.07528 * 11 10 7 14 14 N 1.31610 * 120.00274 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99542 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47280 * 90.00088 * 15 13 11 17 17 H 1.48503 * 109.47047 * 210.00069 * 15 13 11 18 18 H 1.48500 * 109.47421 * 329.99956 * 15 13 11 19 19 C 1.38162 * 119.99709 * 359.97438 * 6 4 3 20 20 C 1.38420 * 119.99902 * 180.02562 * 2 1 3 21 21 F 1.35104 * 120.00245 * 359.96037 * 20 2 1 22 22 H 1.08997 * 109.47266 * 89.99990 * 1 2 3 23 23 H 1.09000 * 109.47152 * 210.00139 * 1 2 3 24 24 H 1.09000 * 109.46996 * 330.00088 * 1 2 3 25 25 H 1.08003 * 120.00220 * 359.74987 * 3 2 1 26 26 H 0.96998 * 120.00310 * 116.29938 * 10 7 6 27 27 H 0.97002 * 120.00501 * 179.97438 * 14 13 11 28 28 H 1.08001 * 119.99885 * 180.02562 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1969 -0.0005 5 9 4.2579 2.3669 -0.0011 6 6 4.2747 -0.0023 -0.0005 7 16 6.0367 -0.0024 -0.0005 8 8 6.4380 0.8965 1.0243 9 8 6.4379 -1.3649 -0.0404 10 7 6.5268 0.6715 -1.4317 11 6 6.2276 0.0543 -2.6170 12 1 5.6028 -0.8266 -2.6245 13 6 6.7274 0.5611 -3.8088 14 7 7.4891 1.6343 -3.7996 15 14 6.3187 -0.2804 -5.4257 16 1 5.0744 0.3040 -5.9872 17 1 7.4356 -0.0807 -6.3838 18 1 6.1212 -1.7335 -5.1915 19 6 3.5838 -1.1988 0.0005 20 6 2.1991 -1.1988 -0.0005 21 9 1.5236 -2.3688 -0.0003 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6580 2.1322 -0.0041 26 1 7.0259 1.5032 -1.4304 27 1 7.8386 1.9882 -4.6323 28 1 4.1238 -2.1341 0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152432719.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -162.243716 kcal Electronic energy + Delta-G solvation = -19645.541914 eV Core-core repulsion = 16037.745309 eV Total energy + Delta-G solvation = -3607.796605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.28995 -50.07261 -40.07329 -38.13342 -36.83176 -36.52014 -34.19766 -32.88256 -31.38707 -28.49253 -26.47482 -24.36451 -23.33693 -20.63099 -20.11481 -19.30208 -18.71649 -18.41224 -18.16885 -17.13424 -16.72882 -16.58297 -16.52542 -16.12339 -15.52018 -15.41607 -15.32232 -14.30176 -14.24878 -14.00124 -13.87785 -13.26687 -13.18472 -13.08536 -13.07520 -12.93374 -12.91729 -12.83014 -12.35157 -12.13093 -11.89949 -11.68219 -10.45282 -10.21413 -9.81160 -8.33042 -5.92413 -0.67053 -0.38773 -0.22205 1.47012 1.49794 1.59920 1.90843 2.23257 2.56904 2.72391 2.87117 2.96845 3.18117 3.27592 3.54375 3.74492 3.98068 4.22916 4.36671 4.51733 4.59208 4.71688 4.80458 5.01928 5.03985 5.10025 5.57364 5.58816 6.70131 6.92245 7.28340 8.85385 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.007655 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.011862 B = 3656.909116 C = 4152.845288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.141 4.141 4 C 0.173 3.827 5 F -0.129 7.129 6 C -0.699 4.699 7 S 2.671 3.329 8 O -1.003 7.003 9 O -0.983 6.983 10 N -0.969 5.969 11 C -0.319 4.319 12 H 0.107 0.893 13 C -0.014 4.014 14 N -0.926 5.926 15 Si 0.982 3.018 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.261 1.261 19 C -0.038 4.038 20 C 0.059 3.941 21 F -0.128 7.128 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.188 0.812 26 H 0.406 0.594 27 H 0.273 0.727 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -1.886 4.635 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.160 4.160 4 C 0.152 3.848 5 F -0.107 7.107 6 C -0.784 4.784 7 S 2.760 3.240 8 O -0.992 6.992 9 O -0.973 6.973 10 N -0.723 5.723 11 C -0.452 4.452 12 H 0.125 0.875 13 C -0.216 4.216 14 N -0.568 5.568 15 Si 0.806 3.194 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.185 1.185 19 C -0.058 4.058 20 C 0.039 3.961 21 F -0.106 7.106 22 H 0.118 0.882 23 H 0.103 0.897 24 H 0.124 0.876 25 H 0.205 0.795 26 H 0.242 0.758 27 H 0.083 0.917 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.834 -2.274 5.261 15.903 hybrid contribution 0.061 0.321 -1.014 1.065 sum -14.773 -1.954 4.247 15.495 Atomic orbital electron populations 1.21026 0.85677 1.05692 1.05036 1.20410 0.99562 0.89863 0.93698 1.21324 0.90322 1.00948 1.03398 1.17384 0.91515 0.79512 0.96395 1.91585 1.80635 1.45563 1.92944 1.31206 1.29856 0.97951 1.19382 1.02891 0.75016 0.73380 0.72684 1.93472 1.82674 1.65599 1.57479 1.93472 1.81199 1.35414 1.87242 1.51296 1.63386 1.37693 1.19894 1.19465 1.31693 1.09822 0.84270 0.87490 1.25989 0.96494 0.96909 1.02199 1.69797 1.34400 1.23444 1.29177 0.85084 0.78028 0.78977 0.77331 1.19408 1.20623 1.18459 1.20864 0.93503 0.97726 0.93732 1.17554 0.89318 0.82209 1.07021 1.91506 1.79625 1.45344 1.94134 0.88216 0.89731 0.87636 0.79478 0.75839 0.91746 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.83 71.24 0.70 -0.86 15 2 C -0.03 -0.77 5.88 -19.83 -0.12 -0.89 15 3 C -0.14 -3.52 9.68 22.31 0.22 -3.31 15 4 C 0.17 6.01 7.21 22.37 0.16 6.17 15 5 F -0.13 -4.94 16.29 44.97 0.73 -4.21 15 6 C -0.70 -26.66 5.80 22.31 0.13 -26.53 15 7 S 2.67 121.14 5.34 -56.49 -0.30 120.84 15 8 O -1.00 -48.47 17.44 -128.00 -2.23 -50.70 15 9 O -0.98 -47.44 16.70 -128.00 -2.14 -49.58 15 10 N -0.97 -48.66 5.74 -54.26 -0.31 -48.97 15 11 C -0.32 -16.53 9.63 84.03 0.81 -15.72 15 12 H 0.11 5.23 7.82 -2.91 -0.02 5.21 15 13 C -0.01 -0.73 5.50 84.86 0.47 -0.26 15 14 N -0.93 -51.06 13.06 21.65 0.28 -50.78 15 15 Si 0.98 40.77 29.55 68.60 2.03 42.80 15 16 H -0.27 -10.65 7.11 99.48 0.71 -9.95 15 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 19 C -0.04 -1.28 9.53 22.31 0.21 -1.07 15 20 C 0.06 1.64 7.24 22.37 0.16 1.80 15 21 F -0.13 -3.28 16.47 44.97 0.74 -2.54 15 22 H 0.10 1.11 8.14 -2.39 -0.02 1.10 15 23 H 0.08 1.05 7.64 -2.39 -0.02 1.03 15 24 H 0.10 0.90 8.09 -2.39 -0.02 0.88 15 25 H 0.19 3.17 8.06 -2.91 -0.02 3.15 15 26 H 0.41 21.16 8.04 -96.74 -0.78 20.39 15 27 H 0.27 14.18 8.31 -92.71 -0.77 13.41 15 28 H 0.16 5.23 7.33 -2.91 -0.02 5.21 15 Total: -1.00 -65.89 275.65 1.99 -63.90 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.45 Total: 19.92 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.74 Total: -40.68 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -0.03 Total: -99.75 kcal Atomic # 8 Polarization: -95.92 SS G_CDS: -4.37 Total: -100.29 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 1.47 Total: -6.74 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 121.14 SS G_CDS: -0.30 Total: 120.84 kcal Total: -65.89 1.99 -63.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152432719.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.344 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds