Wall clock time and date at job start Mon Mar 30 2020 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38229 * 119.99047 * 2 1 4 4 C 1.38182 * 120.05330 * 180.27507 * 3 2 1 5 5 S 1.76205 * 119.98759 * 179.97438 * 4 3 2 6 6 O 1.42100 * 106.40286 * 228.77255 * 5 4 3 7 7 O 1.42107 * 106.40166 * 1.69575 * 5 4 3 8 8 N 1.65599 * 107.21881 * 115.23309 * 5 4 3 9 9 C 1.36938 * 119.99734 * 296.30098 * 8 5 4 10 10 H 1.07995 * 120.00668 * 4.89986 * 9 8 5 11 11 C 1.38822 * 119.99869 * 184.89669 * 9 8 5 12 12 N 1.31612 * 119.99952 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99715 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46859 * 90.00040 * 13 11 9 15 15 H 1.48499 * 109.46926 * 209.99867 * 13 11 9 16 16 H 1.48493 * 109.47471 * 330.00107 * 13 11 9 17 17 C 1.38488 * 120.02760 * 0.02562 * 4 3 2 18 18 F 1.35102 * 120.01710 * 180.02562 * 17 4 3 19 19 C 1.38405 * 119.97495 * 359.97438 * 17 4 3 20 20 C 1.38440 * 119.94779 * 0.02562 * 19 17 4 21 21 F 1.35095 * 120.01434 * 179.97438 * 20 19 17 22 22 H 1.08994 * 109.47050 * 269.72282 * 1 2 3 23 23 H 1.08999 * 109.46892 * 29.72906 * 1 2 3 24 24 H 1.08997 * 109.46708 * 149.72036 * 1 2 3 25 25 H 1.08008 * 119.97225 * 0.25706 * 3 2 1 26 26 H 0.96993 * 120.00459 * 116.29721 * 8 5 4 27 27 H 0.96997 * 119.99917 * 179.97438 * 12 11 9 28 28 H 1.07995 * 120.02411 * 179.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5798 1.1987 -0.0057 5 16 4.4588 2.7259 -0.0064 6 8 5.4333 2.6275 -1.0359 7 8 3.4782 3.7533 0.0400 8 7 5.2937 2.8116 1.4211 9 6 4.6149 2.8575 2.6096 10 1 3.5396 2.7582 2.6215 11 6 5.3091 3.0316 3.7991 12 7 4.6567 3.0753 4.9413 13 14 7.1691 3.2025 3.7785 14 1 7.5330 4.6361 3.6451 15 1 7.7295 2.6653 5.0444 16 1 7.7234 2.4422 2.6298 17 6 4.2741 0.0005 -0.0120 18 9 5.6251 0.0022 -0.0171 19 6 3.5834 -1.1989 -0.0120 20 6 2.1990 -1.1992 -0.0063 21 9 1.5235 -2.3692 -0.0068 22 1 -0.3633 -0.0050 1.0276 23 1 -0.3633 0.8924 -0.5096 24 1 -0.3633 -0.8875 -0.5182 25 1 1.6573 2.1322 0.0042 26 1 6.2634 2.8291 1.4156 27 1 5.1418 3.1966 5.7725 28 1 4.1241 -2.1338 -0.0174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152452923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:54 Heat of formation + Delta-G solvation = -136.670556 kcal Electronic energy + Delta-G solvation = -19670.900028 eV Core-core repulsion = 16064.212358 eV Total energy + Delta-G solvation = -3606.687670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.12787 -48.95071 -38.80157 -36.27975 -34.97226 -34.81991 -32.57453 -31.58956 -30.87450 -26.72337 -24.30693 -23.42207 -22.10577 -18.98674 -18.39201 -18.22932 -17.44497 -16.97800 -16.28917 -15.97028 -15.40672 -15.26213 -14.96210 -14.51461 -14.31639 -14.10931 -13.42064 -13.31998 -13.15614 -12.76265 -12.54860 -12.18959 -11.70438 -11.50257 -11.47297 -11.24440 -11.20650 -11.09440 -10.58459 -10.42243 -10.21567 -10.14177 -9.15663 -8.61821 -8.52465 -6.49037 -3.99625 0.68932 1.07048 1.27002 3.08338 3.11936 3.16060 3.21460 3.81634 3.97313 4.07021 4.38488 4.45322 4.58143 4.65001 5.01351 5.08053 5.28033 5.46959 5.55523 5.57396 5.78468 5.88750 6.02509 6.04614 6.15656 6.74619 6.77037 7.53193 8.17851 8.81101 8.96125 10.61198 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.007140 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.121265 B = 3920.447590 C = 4086.770237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.154 4.154 3 C 0.030 3.970 4 C -0.702 4.702 5 S 2.627 3.373 6 O -0.988 6.988 7 O -0.956 6.956 8 N -0.971 5.971 9 C -0.282 4.282 10 H 0.122 0.878 11 C 0.051 3.949 12 N -0.867 5.867 13 Si 0.883 3.117 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.263 1.263 17 C 0.220 3.780 18 F -0.117 7.117 19 C -0.211 4.211 20 C 0.162 3.838 21 F -0.129 7.129 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.159 0.841 26 H 0.390 0.610 27 H 0.277 0.723 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -7.113 -7.121 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.156 4.156 3 C 0.011 3.989 4 C -0.781 4.781 5 S 2.716 3.284 6 O -0.977 6.977 7 O -0.946 6.946 8 N -0.724 5.724 9 C -0.421 4.421 10 H 0.139 0.861 11 C -0.157 4.157 12 N -0.508 5.508 13 Si 0.709 3.291 14 H -0.191 1.191 15 H -0.202 1.202 16 H -0.189 1.189 17 C 0.199 3.801 18 F -0.095 7.095 19 C -0.231 4.231 20 C 0.142 3.858 21 F -0.108 7.108 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.177 0.823 26 H 0.225 0.775 27 H 0.087 0.913 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.264 -6.615 -7.755 11.049 hybrid contribution 1.297 -1.112 0.587 1.807 sum -2.966 -7.727 -7.169 10.949 Atomic orbital electron populations 1.20716 0.89355 1.03413 1.03265 1.20077 0.97634 0.91746 1.06145 1.20651 0.91206 0.98352 0.88685 1.32080 1.07032 1.22389 1.16602 1.05930 0.73220 0.75884 0.73399 1.93476 1.59888 1.87535 1.56835 1.93500 1.60973 1.53205 1.86885 1.52367 1.15943 1.81857 1.22259 1.19066 0.93801 1.46728 0.82470 0.86050 1.25079 0.99165 0.96861 0.94609 1.69714 1.36610 1.46668 0.97805 0.86547 0.84453 0.79605 0.78488 1.19133 1.20193 1.18850 1.16591 0.76883 0.92542 0.94088 1.91601 1.27966 1.97228 1.92672 1.20967 0.93225 0.98856 1.10094 1.17228 0.89083 0.81004 0.98459 1.91500 1.80050 1.45910 1.93293 0.90382 0.90485 0.91257 0.82317 0.77484 0.91253 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.83 36.01 0.35 -0.87 15 2 C -0.15 -2.24 5.89 -104.54 -0.62 -2.86 15 3 C 0.03 0.50 9.20 -39.61 -0.36 0.13 15 4 C -0.70 -13.24 5.80 -39.51 -0.23 -13.47 15 5 S 2.63 55.95 5.34 -107.50 -0.57 55.37 15 6 O -0.99 -22.28 17.44 -57.17 -1.00 -23.28 15 7 O -0.96 -21.81 16.70 -57.17 -0.95 -22.77 15 8 N -0.97 -22.03 5.54 31.50 0.17 -21.86 15 9 C -0.28 -7.09 10.11 -15.05 -0.15 -7.24 15 10 H 0.12 3.17 8.05 -52.49 -0.42 2.75 15 11 C 0.05 1.32 5.50 -17.43 -0.10 1.22 15 12 N -0.87 -23.42 13.97 55.49 0.78 -22.64 15 13 Si 0.88 19.20 27.78 -169.99 -4.72 14.48 15 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 16 H -0.26 -5.40 6.45 56.52 0.36 -5.04 15 17 C 0.22 3.97 7.21 -39.43 -0.28 3.68 15 18 F -0.12 -2.18 16.29 2.25 0.04 -2.15 15 19 C -0.21 -3.24 10.01 -39.45 -0.39 -3.63 15 20 C 0.16 2.38 7.24 -39.43 -0.29 2.10 15 21 F -0.13 -1.75 16.48 2.25 0.04 -1.71 15 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.08 0.73 8.08 -51.93 -0.42 0.31 15 24 H 0.07 0.68 7.64 -51.93 -0.40 0.28 15 25 H 0.16 2.41 7.33 -52.48 -0.38 2.03 15 26 H 0.39 8.39 5.87 -34.47 -0.20 8.19 15 27 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 28 H 0.15 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 272.48 15.07 4.11 4.11 Total: -1.00 -29.22 272.48 -6.03 -35.25 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -1.84 Total: 6.13 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.07 Total: -20.94 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.95 Total: -44.50 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.95 Total: -46.05 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.07 Total: -3.86 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.72 Total: 14.48 kcal Atomic # 16 Polarization: 55.95 SS G_CDS: -0.57 Total: 55.37 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.22 -6.03 -35.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152452923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.421 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds