Wall clock time and date at job start Mon Mar 30 2020 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38229 * 119.99047 * 2 1 4 4 C 1.38182 * 120.05330 * 180.27507 * 3 2 1 5 5 S 1.76205 * 119.98759 * 179.97438 * 4 3 2 6 6 O 1.42100 * 106.40286 * 228.77255 * 5 4 3 7 7 O 1.42107 * 106.40166 * 1.69575 * 5 4 3 8 8 N 1.65599 * 107.21881 * 115.23309 * 5 4 3 9 9 C 1.36938 * 119.99734 * 296.30098 * 8 5 4 10 10 H 1.07995 * 120.00668 * 4.89986 * 9 8 5 11 11 C 1.38822 * 119.99869 * 184.89669 * 9 8 5 12 12 N 1.31612 * 119.99952 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99715 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46859 * 90.00040 * 13 11 9 15 15 H 1.48499 * 109.46926 * 209.99867 * 13 11 9 16 16 H 1.48493 * 109.47471 * 330.00107 * 13 11 9 17 17 C 1.38488 * 120.02760 * 0.02562 * 4 3 2 18 18 F 1.35102 * 120.01710 * 180.02562 * 17 4 3 19 19 C 1.38405 * 119.97495 * 359.97438 * 17 4 3 20 20 C 1.38440 * 119.94779 * 0.02562 * 19 17 4 21 21 F 1.35095 * 120.01434 * 179.97438 * 20 19 17 22 22 H 1.08994 * 109.47050 * 269.72282 * 1 2 3 23 23 H 1.08999 * 109.46892 * 29.72906 * 1 2 3 24 24 H 1.08997 * 109.46708 * 149.72036 * 1 2 3 25 25 H 1.08008 * 119.97225 * 0.25706 * 3 2 1 26 26 H 0.96993 * 120.00459 * 116.29721 * 8 5 4 27 27 H 0.96997 * 119.99917 * 179.97438 * 12 11 9 28 28 H 1.07995 * 120.02411 * 179.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5798 1.1987 -0.0057 5 16 4.4588 2.7259 -0.0064 6 8 5.4333 2.6275 -1.0359 7 8 3.4782 3.7533 0.0400 8 7 5.2937 2.8116 1.4211 9 6 4.6149 2.8575 2.6096 10 1 3.5396 2.7582 2.6215 11 6 5.3091 3.0316 3.7991 12 7 4.6567 3.0753 4.9413 13 14 7.1691 3.2025 3.7785 14 1 7.5330 4.6361 3.6451 15 1 7.7295 2.6653 5.0444 16 1 7.7234 2.4422 2.6298 17 6 4.2741 0.0005 -0.0120 18 9 5.6251 0.0022 -0.0171 19 6 3.5834 -1.1989 -0.0120 20 6 2.1990 -1.1992 -0.0063 21 9 1.5235 -2.3692 -0.0068 22 1 -0.3633 -0.0050 1.0276 23 1 -0.3633 0.8924 -0.5096 24 1 -0.3633 -0.8875 -0.5182 25 1 1.6573 2.1322 0.0042 26 1 6.2634 2.8291 1.4156 27 1 5.1418 3.1966 5.7725 28 1 4.1241 -2.1338 -0.0174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152452923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:54 Heat of formation + Delta-G solvation = -157.191687 kcal Electronic energy + Delta-G solvation = -19671.789891 eV Core-core repulsion = 16064.212358 eV Total energy + Delta-G solvation = -3607.577533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.39029 -50.28820 -40.10942 -38.19094 -36.89160 -36.62870 -33.74764 -33.41510 -32.24985 -27.84700 -26.18898 -24.78862 -23.43223 -20.78344 -20.21356 -19.57326 -18.91250 -18.48930 -17.99301 -17.28559 -16.83797 -16.60003 -16.58805 -16.01357 -15.83301 -15.49588 -15.05916 -14.60404 -14.42892 -14.36571 -13.95046 -13.33579 -13.18619 -13.11732 -13.10696 -12.95898 -12.90401 -12.66037 -12.31893 -12.16483 -11.97356 -11.84621 -10.50069 -10.40054 -9.87159 -8.32050 -5.97862 -0.72833 -0.44318 -0.21153 1.36020 1.38697 1.43945 1.86583 2.23219 2.30861 2.52605 2.68628 3.07017 3.13147 3.21851 3.50673 3.67488 3.99575 4.17455 4.35288 4.58721 4.63356 4.64842 4.74638 4.92353 5.01453 5.11497 5.52317 5.73232 6.29488 6.96671 7.13207 8.82777 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.007140 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.121265 B = 3920.447590 C = 4086.770237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.145 4.145 3 C 0.022 3.978 4 C -0.721 4.721 5 S 2.693 3.307 6 O -0.991 6.991 7 O -0.974 6.974 8 N -0.996 5.996 9 C -0.308 4.308 10 H 0.097 0.903 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.930 3.070 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.245 1.245 17 C 0.201 3.799 18 F -0.124 7.124 19 C -0.202 4.202 20 C 0.173 3.827 21 F -0.115 7.115 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.170 0.830 26 H 0.398 0.602 27 H 0.275 0.725 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -8.918 -9.309 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.147 4.147 3 C 0.003 3.997 4 C -0.807 4.807 5 S 2.782 3.218 6 O -0.981 6.981 7 O -0.965 6.965 8 N -0.752 5.752 9 C -0.440 4.440 10 H 0.115 0.885 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.753 3.247 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.169 1.169 17 C 0.180 3.820 18 F -0.102 7.102 19 C -0.222 4.222 20 C 0.153 3.847 21 F -0.093 7.093 22 H 0.106 0.894 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.187 0.813 26 H 0.234 0.766 27 H 0.084 0.916 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.926 -8.356 -9.826 13.807 hybrid contribution 1.254 -0.750 0.787 1.659 sum -3.672 -9.106 -9.039 13.346 Atomic orbital electron populations 1.20883 0.86495 1.05244 1.04391 1.20416 0.99627 0.90718 1.03889 1.20868 0.90252 0.99996 0.88592 1.31254 1.08061 1.20191 1.21172 1.01935 0.72863 0.75072 0.71952 1.93509 1.60575 1.87893 1.56122 1.93506 1.61812 1.54237 1.86899 1.51628 1.16033 1.86641 1.20914 1.18698 0.93031 1.49111 0.83187 0.88502 1.25661 1.03006 0.97026 0.94316 1.69817 1.37836 1.51497 0.98358 0.85812 0.80062 0.79797 0.79035 1.18849 1.20096 1.16886 1.16784 0.76769 0.93208 0.95225 1.91586 1.28439 1.97278 1.92876 1.21230 0.93657 0.98984 1.08341 1.17301 0.88992 0.81499 0.96889 1.91547 1.79709 1.45174 1.92908 0.89441 0.88751 0.89502 0.81284 0.76630 0.91598 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.83 71.24 0.70 -1.33 15 2 C -0.14 -3.70 5.89 -19.81 -0.12 -3.81 15 3 C 0.02 0.68 9.20 22.25 0.20 0.88 15 4 C -0.72 -26.00 5.80 22.32 0.13 -25.87 15 5 S 2.69 112.19 5.34 -56.49 -0.30 111.89 15 6 O -0.99 -42.91 17.44 -128.00 -2.23 -45.14 15 7 O -0.97 -43.83 16.70 -128.00 -2.14 -45.96 15 8 N -1.00 -45.43 5.54 -54.26 -0.30 -45.73 15 9 C -0.31 -16.09 10.11 84.04 0.85 -15.24 15 10 H 0.10 5.35 8.05 -2.91 -0.02 5.33 15 11 C 0.00 0.06 5.50 84.87 0.47 0.53 15 12 N -0.93 -53.35 13.97 21.65 0.30 -53.04 15 13 Si 0.93 40.28 27.78 68.60 1.91 42.18 15 14 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 15 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 16 H -0.24 -9.64 6.45 99.48 0.64 -9.00 15 17 C 0.20 6.82 7.21 22.37 0.16 6.98 15 18 F -0.12 -4.41 16.29 44.97 0.73 -3.68 15 19 C -0.20 -5.50 10.01 22.36 0.22 -5.27 15 20 C 0.17 4.41 7.24 22.37 0.16 4.57 15 21 F -0.12 -2.60 16.48 44.97 0.74 -1.86 15 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.09 1.40 8.08 -2.39 -0.02 1.38 15 24 H 0.09 1.29 7.64 -2.39 -0.02 1.27 15 25 H 0.17 4.80 7.33 -2.91 -0.02 4.78 15 26 H 0.40 17.01 5.87 -96.75 -0.57 16.44 15 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 28 H 0.18 3.76 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -64.15 272.48 2.08 -62.06 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.59 Total: 17.86 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 2.78 Total: -38.57 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: 0.00 Total: -98.78 kcal Atomic # 8 Polarization: -86.74 SS G_CDS: -4.37 Total: -91.11 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 1.47 Total: -5.54 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.91 Total: 42.18 kcal Atomic # 16 Polarization: 112.19 SS G_CDS: -0.30 Total: 111.89 kcal Total: -64.15 2.08 -62.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152452923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.128 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds